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Reference SNP (refSNP) Cluster Report: rs11073328                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.0966/484 (1000 Genomes)
T=0.0926/11626 (TOPMED)
HGVS Names
  • CM000677.2:g.38472642C>T
  • NC_000015.10:g.38472642C>T
  • NC_000015.9:g.38764843C>T
  • NM_001042429.1:c.532-863C>T
  • NM_173611.3:c.532-863C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282221096 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11073328 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss17551536CSHL-HAPMAP|CSHL-HuCC-200402.chr15.NT_010194.16_9555400byFreqfwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca02/19/0408/05/04120Genomicunknown
ss19332791CSHL-HAPMAP|CSHL-HuDD-200402.chr15.NT_010194.16_9555400fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca02/20/0403/04/04120Genomicunknown
ss43771739ABI|hCV122395fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca07/18/0507/18/05126Genomicunknown
ss66119151AFFY|SNP_A-2035422byFreqrev/TA/Gaaatgggcacagttgagtttcttctgagggtg10/27/0603/31/08127Genomicunknown
ss66732396ILLUMINA|HumanHap300v1.1_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca11/09/0611/09/06127Genomicunknown
ss66918752ILLUMINA|HumanHap550v1.1_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca11/14/0611/14/06127Genomicunknown
ss67060996ILLUMINA|HumanHap650Yv1.0_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca11/14/0611/14/06127Genomicunknown
ss69173919PERLEGEN|PGP09647155fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca01/30/0701/30/07127Genomicunknown
ss70388338ILLUMINA|HumanHap300v2.0_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca04/18/0711/18/07127Genomicunknown
ss70516549ILLUMINA|HumanHap550v3.0__rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca04/20/0703/30/08130Genomicunknown
ss71044873ILLUMINA|HumanHap650Yv3.0_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca04/23/0704/23/07127Genomicunknown
ss75706656ILLUMINA|ILMN_Human_1M_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca08/28/0708/29/07129Genomicunknown
ss76110058AFFY|AFFY_6_1M_SNP_A-2035422rev/TA/Gaaatgggcacagttgagtttcttctgagggtg08/28/0708/30/07129Genomicunknown
ss85061978KRIBB_YJKIM|KHS888145fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca12/04/0712/08/07130Genomicunknown
ss96805234HUMANGENOME_JCVI|1103645589562fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca03/27/0803/27/08130Genomicunknown
ss1087481181000GENOMES|CEU.trio.12.15.2008_3147401_chr15_36552135fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca12/16/0812/16/08130Genomicunknown
ss121438536ILLUMINA|HumanCNV370v1_C_rs11073328fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca04/14/0904/14/09131Genomicunknown
ss132393701ENSEMBL|ENSSNP1094503fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca12/08/0810/15/09131Genomicunknown
ss152921417ILLUMINA|Human610_Quadv1_B_rs11073328-128_B_F_1501620125fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca06/18/0906/19/09131Genomicunknown
ss159162136ILLUMINA|Human660W-Quad_v1_A_rs11073328-128_B_F_1501620125fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca07/06/0907/06/09131Genomicunknown
ss159954484ILLUMINA|HumanOmni1-Quad_v1-0_B_rs11073328-128_B_F_1501620125fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca08/04/0910/01/09131Genomicunknown
ss169769853ILLUMINA|HumanCNV370-Quadv3_C_rs11073328-128_B_F_1501620125fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca10/01/0910/02/09132Genomicunknown
ss170990768ILLUMINA|Human1M-Duov3_B_rs11073328-128_B_F_1501620125fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca10/01/0910/01/09132Genomicunknown
ss172536836AFFY|GenomeWideSNP_5_SNP_A-2035422rev/TA/Gaaatgggcacagttgagtttcttctgagggtg10/01/0910/02/09132Genomicunknown
ss2367479221000GENOMES|pilot_1_CEU_6352551_chr15_36552135fwd/C/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca05/01/1005/01/10132Genomicunknown
ss2431396291000GENOMES|pilot_1_CHB+JPT_5024706_chr15_36552135fwd/C/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca05/01/1005/01/10132Genomicunknown
ss282221096GMI|GMI_AK_SNP_6541493fwd/C/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca12/16/1012/16/10137Genomicunknown
ss291821616PJP|SNP_1327974_chr15_36552135fwd/C/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca01/21/1101/21/11134Genomicunknown
ss479452139ILLUMINA|HumanOmni2.5-4v1_B_rs11073328-128_B_F_1768005308fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact01/30/1210/28/16137Genomicunknown
ss479456018ILLUMINA|HumanOmniExpress-12v1_C_rs11073328-131_B_F_1857220268fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact01/30/1210/27/16137Genomicunknown
ss479883924ILLUMINA|HumanOmni1-Quad_v1-0_C_rs11073328-131_B_F_1865774295fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact01/30/1208/28/15146Genomicunknown
ss484525800ILLUMINA|HumanOmni2.5-4v1_D_rs11073328-131_B_F_1857220268fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact01/30/1210/27/16137Genomicunknown
ss491492079EXOME_CHIP|.GWAS._208305_chr_15_38764843fwd/BC/Ttagagcttttccatcaccctcagaagaaactcaactgtgcccatttacagttactccaca03/05/1203/05/12137Genomicunknown
ss536670551ILLUMINA|HumanOmni5-4v1_B_rs11073328-131_B_F_1885473317fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact06/22/1208/29/15146Genomicunknown
ss660143449SSMP|15_38764843fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact12/14/1202/13/15138Genomicunknown
ss778688835ILLUMINA|HumanOmni25Exome-8v1_A_rs11073328-131_B_F_1885473317fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/30/1307/10/15146Genomicunknown
ss780680920ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs11073328-131_B_F_1990478395fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/30/1307/10/15146Genomicunknown
ss782709516ILLUMINA|HumanOmni2.5-4v1_H_rs11073328-131_B_F_1857220268fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/30/1307/29/15146Genomicunknown
ss783354216ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs11073328-131_B_F_1990478395fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/31/1306/18/15146Genomicunknown
ss783677353ILLUMINA|HumanOmniExpressExome-8v1_A_rs11073328-131_B_F_1885473317fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/31/1306/18/15146Genomicunknown
ss825357733ILLUMINA|HumanCNV370v1_C_rs11073328-126_B_F_IFB1136155246:0fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact06/24/1311/21/14144Genomicunknown
ss831960835ILLUMINA|HumanOmniExpress-12v1_H_rs11073328-131_B_F_1857220268fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact09/17/1306/18/15146Genomicunknown
ss834147535ILLUMINA|HumanOmni2.5-8v1_A_rs11073328-131_B_F_1885473317fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact09/18/1307/29/15146Genomicunknown
ss991694284EVA-GONL|EVA-GONL_rs11073328fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact04/23/1404/30/14142Genomicunknown
ss1080054483JMKIDD_LAB|HGDP_WGS_chr15_38764843fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact07/10/1407/12/14142Genomicunknown
ss13530915471000GENOMES|PHASE3_V1_66408311fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact08/16/1408/16/14142Genomicunknown
ss1427598129DDI|DDI_rs11073328fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact11/04/1411/04/14144Genomicunknown
ss1577567218EVA_GENOME_DK|EVA_GENOME_DK_snv_rs11073328fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact02/19/1502/19/15144Genomicunknown
ss1632802681EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_15_38764843_36721753fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact03/04/1503/04/15144Genomicunknown
ss1675796714EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_15_38764843_36721753fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact03/04/1503/04/15144Genomicunknown
ss1695706579EVA_DECODE|EVA_DECODE_15_36552135_121155_rs11073328fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact03/02/1503/04/15144Genomicunknown
ss1713482975EVA_SVP|EVA_SVP_1177342fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact03/12/1503/12/15144Genomicunknown
ss1752157673ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs11073328-131_B_F_1990478395fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/27/1506/09/15146Genomicunknown
ss1752157674ILLUMINA|OmniExpressExome-8v1-1_B_rs11073328-131_B_F_1885473317fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/27/1506/09/15146Genomicunknown
ss1917894303ILLUMINA|HumanExome-12v1-1_B_exm-rs11073328-131_B_F_1990478395fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact10/16/1510/16/15147Genomicunknown
ss1935098793WEILL_CORNELL_DGM|SNV:chr15:38764843fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact10/16/1510/17/15147Genomicunknown
ss1946390102ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs11073328-131_B_F_1990478395fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact10/29/1510/29/15147Genomicunknown
ss1959603299ILLUMINA|exm-rs11073328-131_B_F_1990478395fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact11/13/1511/13/15147Genomicunknown
ss2028328992JJLAB|SNP8831547fwd/BC/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact08/29/1608/31/16149Genomicunknown
ss2156726192USC_VALOUEV|NC_000015.9:g.38764843C>Tfwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact11/17/1611/17/16150Genomicunknown
ss2206018886HUMAN_LONGEVITY|HLI-15-38472642-C-Tfwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact11/18/1611/18/16150Genomicunknown
ss2370646450TOPMED|15_38764843_C/Tfwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact11/19/1611/19/16150Genomicunknown
ss2633217680ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs11073328-131_B_F_213fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact02/02/1702/02/17151Genomicunknown
ss2633217681ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs11073328-131_B_F_1885473fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact02/02/1702/02/17151Genomicunknown
ss2633217682ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs11073328-131_B_F_213fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact02/02/1702/02/17151Genomicunknown
ss2701191774GRF|rs11073328fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact02/13/1702/13/17151Genomicunknown
ss2933819921GNOMAD|rs11073328fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/23/1705/23/17151Genomicunknown
ss2985037024AFFY|Axiom_PsorMich_Affx-11516924fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/24/1705/24/17151Genomicunknown
ss3013131912SWEGEN|NC_000015.9:g.38764843C>Tfwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact05/30/1705/30/17151Genomicunknown
ss3021622709ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs11073328-131_B_F_1990478395fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact06/28/1706/28/17151Genomicunknown
ss3027988486BIOINF_KMB_FNS_UNIBA|15.38472642C>Tfwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact07/05/1707/05/17151Genomicunknown
ss3225146822TOPMED|TOPMed_freeze_5?chr15:38,472,642fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact10/01/1710/01/17151Genomicunknown
ss3351076494CSHL|rs11073328fwd/C/Tcttttccatcaccctcagaagaaactcaactgtgcccatttacagttact10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11073328|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 CAGATTTATT AAAACTATTA CGTAATGTTG GAATCCTAGG AATGGAGCTG AATGTGATTA
 CACGTAACAA ACTACAAGTA TACATTGAGA ATTCCTCTGG AGTGAGGAGT TACAACTCAT
 ACTTTTTATA ATGTATGAAA AAACCTAAAA TTGGATATAT TTACAACAGT TGGAGAATCT
 ACAGAAATGG TCCATTTTAA GAAAATAAAT TAATAATTTC TTTAAAATAT GTACAAATTG
 TATCAGTAGA GAAATTGTAT CATTGTAGAT GTAGATTTGC TGTGAAGCTA CTAAAGCTGA
 AGTTTTGGGG TCTCTTATTT GCACAGGTTC TTTCTAAGCT AATTTTTTTA AAACACCATT
 TATGAAATGT AATCATGCCA TAAAGTTTGC CCATTTTAAG TATATATATA TAGTTCAGTG
 AATTTTAGTA TATTTACAGA GTTAAACAAC CATCACCAAA CTCTTGAATT TAGAGCTTTT
 CCATCACCCT CAGAAGAAAC
 Y
 TCAACTGTGC CCATTTACAG TTACTCCACA TTACAACCCC AGCTTCCAAG CTAATTTTGA
 ATTCTTTCCT TAAAGAGTGC CCCCAACATT AAATAAGCTT CATGCTCCTT AAAATCTGAA
 CTGCCCTTGG TTGTTTCCTT TGGTTACCTT GTAAAAAAAA CTGTATTTCA TTTGGTTTTG
 TAAATATTTT ATTTAGCTAA TGATGGATTC TCCAGTCAGG AAGGTAAATT AATCCTTTAG
 TTAGGAGGAT AAATTATTGA ATGACCCTGA TATTGCTAAA GGAAAAGTAA ATGCCTAATA
 TCTTGTTTAT CAAAATAAAA ATGTTTCAAG TAATTTAAAT TAGGGGCTTT GCAAAAGTAA
 TGAAAATATG TATGTGATGA CTGTAATTGA GAGAGATGGC TTGCTCCCTT ATGTTGTCTT
 GCTGAACAAT GAAACAAGAG TACTTACAAC TGGAATGTGT ACATAGCATT TATTTGAGAA
 AAATCAATGT GCTGGTTAAA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010194 ABBA01038481
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss132393701ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 2IG 1.00000000 1.00000000
ss1353091547EAS 1008AF 0.900799990.09920000
EUR 1006AF 0.899600030.10040000
AFR 1322AF 0.984100040.01590000
AMR 694AF 0.854500000.14549999
SAS 978AF 0.835399990.16460000
ss17551536HapMap-CEUEuropean 120IG0.800000010.183333340.016666670.751830000.891666650.10833333
HapMap-HCBAsian 82IG0.804878060.19512194 1.000000000.902439000.09756097
HapMap-JPTAsian 168IG0.761904780.226190480.011904761.000000000.875000000.12500000
HapMap-YRISub-Saharan African 216IG0.990740720.00925926 1.000000000.995370390.00462963
HAPMAP-ASW 96IG0.937500000.06250000 1.000000000.968750000.03125000
HAPMAP-CHBAsian 82IG0.853658560.121951220.024390240.200325000.914634170.08536585
HAPMAP-GIH 168IG0.702380960.214285720.083333340.010028000.809523820.19047619
HAPMAP-LWK 178IG0.921348330.07865169 1.000000000.960674170.03932584
HAPMAP-MEX 100IG0.579999980.360000010.060000001.000000000.759999990.23999999
HAPMAP-MKK 278IG0.863309320.13669065 1.000000000.931654690.06834532
ENSEMBL_Watson 2IG1.00000000 1.00000000
ss236747922pilot_1_CEU_low_coverage_panel 120AF 0.899999980.10000000
ss243139629pilot_1_CHB+JPT_low_coverage_panel 120AF 0.899999980.10000000
ss66119151HapMap-CEUEuropean 118IG0.796610180.186440680.016949150.751830000.889830530.11016949
HapMap-HCBAsian 90IG0.800000010.20000000 0.751830000.899999980.10000000
HapMap-JPTAsian 90IG0.800000010.177777780.022222220.527089000.888888900.11111111
HapMap-YRISub-Saharan African 120IG1.00000000 1.00000000
ss76110058ICMHP 8IG1.00000000 1.00000000
ss96805234J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.175+/-0.2380000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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