NCBI
dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Re-designed RefSNP Report page!
Clean, modern design that makes it easy to find the information that you are looking for. Report any problems by sending us an email.
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs10845295                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C/G (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4576/54536 (ExAC)
A=0.3355/1680 (1000 Genomes)
A=0.4409/5427 (GO-ESP)
A=0.4354/54667 (TOPMED)
HGVS Names
  • CM000674.2:g.11031233G>A
  • CM000674.2:g.11031233G>C
  • NC_000012.11:g.11183832G>A
  • NC_000012.12:g.11031233G>A
  • NC_000012.12:g.11031233G>C
  • NM_001291314.1:c.-126+15787C>G
  • NM_001291314.1:c.-126+15787C>T
  • NM_001291315.1:c.36+15787C>G
  • NM_001291315.1:c.36+15787C>T
  • NM_001316893.1:c.140+3549C>G
  • NM_001316893.1:c.140+3549C>T
  • NM_176885.2:c.103C>G
  • NM_176885.2:c.103C>T
  • NP_795366.2:p.Arg35Gly
  • NP_795366.2:p.Arg35Trp
  • NR_037918.2:n.477+3549C>G
  • NR_037918.2:n.477+3549C>T
  • NR_133575.1:n.371+15787C>G
  • NR_133575.1:n.371+15787C>T
  • NT_187658.1:g.230238A=
  • NT_187658.1:g.230238A>C
  • NT_187658.1:g.230238A>G
  • NW_003571047.1:g.230249A=
  • NW_003571047.1:g.230249A>G
  • NW_003571050.1:g.229939G>A
  • NW_003571050.1:g.229939G>C
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss281274434 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10845295 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss15982272SC_SNP|NT_009714.16_3942806fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc11/18/0311/22/03120Genomicunknown
ss18998502SC_SNP|SC-CHR9-12_NA07340-200402.chr12.NT_009714.16_3942806fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc02/20/0403/04/04120Genomicunknown
ss19254694CSHL-HAPMAP|CSHL-HuDD-200402.chr12.NT_009714.16_3942806fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc02/20/0403/04/04120Genomicunknown
ss20913144SSAHASNP|WGSA-200403-chr12.chr12.NT_009714.16_3942806fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc03/19/0403/19/04121Genomicunknown
ss40236006ABI|hCV26575249fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc07/16/0507/16/05126Genomicunknown
ss88967456BCMHGSC_JDW|JWB-0518987fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc02/26/0802/28/08129Genomicunknown
ss97286422HUMANGENOME_JCVI|1103649367278fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc03/28/0803/28/08130Genomicunknown
ss132063428ENSEMBL|ENSSNP667381fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc12/08/0810/14/09131Genomicunknown
ss132999407ENSEMBL|ENSSNP10552373fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc05/11/0905/14/09131Genomicunknown
ss169064850COMPLETE_GENOMICS|NA19240_36_chr12_11075099fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc10/01/0910/01/09132Genomicunknown
ss170402411COMPLETE_GENOMICS|NA20431_36_chr12_11075099fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc10/01/0910/05/09132Genomicunknown
ss203547307BUSHMAN|BUSHMAN-chr12-11075098fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc02/16/1003/09/10132Genomicunknown
ss208423931BCM-HGSC-SUB|BCM_CMT_1011-2436150fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc03/15/1003/19/10132Genomicunknown
ss2256056851000GENOMES|pilot_1_YRI_7415368_chr12_11075099fwd/A/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc04/22/1004/22/10132Genomicunknown
ss2358229471000GENOMES|pilot_1_CEU_5427576_chr12_11075099fwd/A/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc05/01/1005/01/10132Genomicunknown
ss2424019611000GENOMES|pilot_1_CHB+JPT_4287038_chr12_11075099fwd/A/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc05/01/1005/01/10132Genomicunknown
ss254880108BL|SNP15346_12_11075099fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc08/19/1008/19/10134Genomicunknown
ss281274434GMI|GMI_AK_SNP_5594823fwd/A/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc12/16/1012/16/10137Genomicunknown
ss291379939PJP|SNP_886297_chr12_11075099fwd/A/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc01/21/1101/21/11134Genomicunknown
ss491464425EXOME_CHIP|nonsyn_180651_chr_12_11183832fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc03/05/1203/05/12137Genomicunknown
ss491660690CLINSEQ_SNP|SNV-chr12-11075099byFreqfwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg03/06/1209/05/14137Genomicunknown
ss562992464TISHKOFF|snp_chr12_11183832fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg11/22/1211/23/12138Genomicunknown
ss658524110SSMP|12_11183832fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg12/14/1202/13/15138Genomicunknown
ss713077268NHLBI-ESP|ESP6500SI-chr12-11183832fwd/TA/Gcagcaaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatgaagcc02/20/1302/20/13138Genomicunknown
ss989237690EVA-GONL|EVA-GONL_rs10845295fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg04/23/1404/25/14142Genomicunknown
ss13439107821000GENOMES|PHASE3_V1_56826491fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg08/16/1408/16/14142Genomicunknown
ss1426843804DDI|DDI_rs10845295fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg11/04/1411/04/14144Genomicunknown
ss1628011842EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_12_11183832_31436453fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg03/04/1503/04/15144Genomicunknown
ss1671005875EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_12_11183832_31436453fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg03/04/1503/04/15144Genomicunknown
ss1690795888EVA_EXAC|EVA_EXAC_6013143fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg03/04/1503/04/15144Genomicunknown
ss1711321289EVA_MGP|EVA_XIMO_437049fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg03/09/1503/09/15144Genomicunknown
ss1932603246WEILL_CORNELL_DGM|SNV:chr12:11183832fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg10/16/1510/17/15147Genomicunknown
ss1959413491ILLUMINA|12:11183832-GA-0_T_F_2299323628fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg11/13/1511/13/15147Genomicunknown
ss1967522693GENOMED|rs10845295fwd/TA/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg02/16/1602/16/16147Genomicunknown
ss2155369218USC_VALOUEV|NC_000012.11:g.11183832G>Afwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg11/17/1611/17/16150Genomicunknown
ss2351409913TOPMED|12_11183832_G/Afwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg11/19/1611/19/16150Genomicunknown
ss2628001927SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4796015fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg01/06/1701/06/17151Genomicunknown
ss2699694333GRF|rs10845295fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg02/13/1702/13/17151Genomicunknown
ss2739640113GNOMAD|exomes_rs10845295fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg05/17/1705/17/17151Genomicunknown
ss2748815606GNOMAD|coding_rs10845295fwd/A/C/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg05/17/1705/17/17151Genomicunknown
ss2907335302GNOMAD|rs10845295fwd/A/C/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg05/22/1705/22/17151Genomicunknown
ss2984968034AFFY|Axiom_PsorMich_Affx-6882317fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg05/24/1705/24/17151Genomicunknown
ss3009205243SWEGEN|NC_000012.11:g.11183832G>Afwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg05/30/1705/30/17151Genomicunknown
ss3021406194ILLUMINA|MEGA_Consortium_v2_15070954_A2_12:11183832-GA-0_T_F_2299323628fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg06/28/1706/28/17151Genomicunknown
ss3023067460EVA_SAMSUNG_MC|EXOMES.12:g11183832g>afwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg07/03/1707/03/17151Genomicunknown
ss3027327815BIOINF_KMB_FNS_UNIBA|12.11031233G>Afwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg07/05/1707/05/17151Genomicunknown
ss3162937821TOPMED|TOPMed_freeze_5?chr12:11,031,233-01fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg09/30/1709/30/17151Genomicunknown
ss3162937822TOPMED|TOPMed_freeze_5?chr12:11,031,233-02fwd/C/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg09/30/1709/30/17151Genomicunknown
ss3349923559CSHL|rs10845295fwd/A/Gaaagagatcttttgtctcttgacccctcaatggaatttaccaatgctatg10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10845295|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/C/G'|mol=Genomic|build=151
 AGAACAGATT AACAGCAAAA AACATAGCAG GGTCAGAGTG AAGGGCACTA AGTTTCCTAG
 CGTGGTTACA GTCGCATCTG AAAGGTACAC TGCACTCCTC AATTTGATCT TCCAAGTCAA
 GTTTCCTTCA TATTCTTTTG TCCGTACAAT CTCTTTCATG TTTATCACAA AAAGTTGACA
 AGCCAAAAAT AGTAAAGGCC CCAACAGCAT CACCAGAATG ACACTCTTAA CTCTCCTCTT
 TAAGTGAAGA AAAATAAGGT TGGAGAAATT GGCAATCTTG AGCAAATAAA ATATGCTGAG
 GCTAGTAGCA AGCCAGTTGC TGAAATGGCC GGTTACTGCC CAGACATTAT AAGCAGTAGT
 TCTTACTTCT ACACTATAAA AAGCTGGATT AAACACAGTT GAATACCAAT TTAATAATAA
 TACCCAGAGC AAACCAACTC TGGAGACCGC CAGAGCAGTG AGAATCTGGT CAGCAAAAGA
 GATCTTTTGT CTCTTGACCC
 V
 CTCAATGGAA TTTACCAATG CTATGAAGCC ATTAGCAAAA TTTCCAATAA CAAATAGAAC
 CACTACCACA CTGGAAAAAA TGATGGGTAT AAAAGTTGTC ATGTCTGAAC AGACAAAAAA
 AAATTGTTTT AATGCTGGTG TTGTGTCCGG AGTTGGTTCC TGCAGGTGGG TTCGTGGTCT
 CCCTGACTTC AAAAATGGAG CCACCGACCT TCACGGTGAG TGTTGCTGCT CTTAAAGATG
 GCATGGACCC AAAGAGTGAG CAACAGCAAG GTTTATTGAG AAGAGAGAAA GGACAAAGCT
 TCCACCGGGA GGAAGGCGAC CCAGGCAGGT TGCTGCTGCT GGCTGAAGCC ATGAGCTTTT
 ATTCCCTTAT TTGTCCCCTC CCATTTTCCT TTTTTTGTCC TATCAGAGTG CCCTTTTTTC
 AATCCTCCCT GCCATTGGCT ACTTTTAGGA TCCTGTTGCT TGGTGTATTT TAGAGCGATT
 GGTGCATTTT ACAATCCTCT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_009714 ABBA01067808
dbSNP Blast Analysis
UniGene Cluster ID
553663

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss132063428ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 2IG1.00000000 1.00000000
ss132999407ENSEMBL_Watson 2IG1.00000000 1.00000000
ss1343910782EAS 1008AF 0.194400000.80559999
EUR 1006AF 0.480099980.51990002
AFR 1322AF 0.343400000.65660000
AMR 694AF 0.456799980.54320002
SAS 978AF 0.235200000.76480001
ss169064850YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss1690795888ExAc_Aggregated_Populations120896AF 0.452992650.54700732
ss170402411PGP 2IG 1.00000000 0.500000000.50000000
ss203547307BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss225605685pilot_1_YRI_low_coverage_panel 118AF 0.288135590.71186441
ss235822947pilot_1_CEU_low_coverage_panel 120AF 0.500000000.50000000
ss242401961pilot_1_CHB+JPT_low_coverage_panel 120AF 0.250000000.75000000
ss491660690CSAgilent 583GF0.257000000.468999980.273999990.294266000.491499990.50849998
ss97286422J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.496+/-0.0420000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement