Name: rs10801935
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs10801935

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:117179265 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>A / C>G / C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: C=0.447780 (118523/264690, TOPMED)
C=0.40914 (18026/44058, ALFA)
C=0.24706 (6981/28256, 14KJPN) (+ 18 more)
C=0.24564 (4117/16760, 8.3KJPN)
C=0.4143 (2653/6404, 1000G_30x)
C=0.4044 (2025/5008, 1000G)
C=0.3394 (1517/4470, Estonian)
C=0.2403 (704/2930, KOREAN)
C=0.4783 (904/1890, HapMap)
C=0.2462 (451/1832, Korea1K)
C=0.3882 (441/1136, Daghestan)
C=0.385 (384/998, GoNL)
C=0.205 (161/784, PRJEB37584)
C=0.291 (182/626, Chileans)
C=0.385 (231/600, NorthernSweden)
C=0.226 (104/460, SGDP_PRJ)
C=0.449 (97/216, Qatari)
C=0.144 (31/216, Vietnamese)
A=0.44 (34/78, Ancient Sardinia)
C=0.20 (10/50, Siberian)
C=0.42 (17/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: VTCN1 : Intron Variant
Publications: 4 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	44058	C=0.40914	A=0.59074, G=0.00011, T=0.00000
European	Sub	28940	C=0.38918	A=0.61064, G=0.00017, T=0.00000
African	Sub	4028	C=0.7547	A=0.2453, G=0.0000, T=0.0000
African Others	Sub	140	C=0.879	A=0.121, G=0.000, T=0.000
African American	Sub	3888	C=0.7503	A=0.2497, G=0.0000, T=0.0000
Asian	Sub	380	C=0.261	A=0.739, G=0.000, T=0.000
East Asian	Sub	306	C=0.212	A=0.788, G=0.000, T=0.000
Other Asian	Sub	74	C=0.46	A=0.54, G=0.00, T=0.00
Latin American 1	Sub	592	C=0.485	A=0.515, G=0.000, T=0.000
Latin American 2	Sub	6490	C=0.2948	A=0.7052, G=0.0000, T=0.0000
South Asian	Sub	88	C=0.40	A=0.60, G=0.00, T=0.00
Other	Sub	3540	C=0.3924	A=0.6076, G=0.0000, T=0.0000

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.447780	A=0.552220
Allele Frequency Aggregator	Total	Global	44058	C=0.40914	A=0.59074, G=0.00011, T=0.00000
Allele Frequency Aggregator	European	Sub	28940	C=0.38918	A=0.61064, G=0.00017, T=0.00000
Allele Frequency Aggregator	Latin American 2	Sub	6490	C=0.2948	A=0.7052, G=0.0000, T=0.0000
Allele Frequency Aggregator	African	Sub	4028	C=0.7547	A=0.2453, G=0.0000, T=0.0000
Allele Frequency Aggregator	Other	Sub	3540	C=0.3924	A=0.6076, G=0.0000, T=0.0000
Allele Frequency Aggregator	Latin American 1	Sub	592	C=0.485	A=0.515, G=0.000, T=0.000
Allele Frequency Aggregator	Asian	Sub	380	C=0.261	A=0.739, G=0.000, T=0.000
Allele Frequency Aggregator	South Asian	Sub	88	C=0.40	A=0.60, G=0.00, T=0.00
14KJPN	JAPANESE	Study-wide	28256	C=0.24706	A=0.75294
8.3KJPN	JAPANESE	Study-wide	16760	C=0.24564	A=0.75436
1000Genomes_30x	Global	Study-wide	6404	C=0.4143	A=0.5857
1000Genomes_30x	African	Sub	1786	C=0.6848	A=0.3152
1000Genomes_30x	Europe	Sub	1266	C=0.3681	A=0.6319
1000Genomes_30x	South Asian	Sub	1202	C=0.3511	A=0.6489
1000Genomes_30x	East Asian	Sub	1170	C=0.1795	A=0.8205
1000Genomes_30x	American	Sub	980	C=0.339	A=0.661
1000Genomes	Global	Study-wide	5008	C=0.4044	A=0.5956
1000Genomes	African	Sub	1322	C=0.6868	A=0.3132
1000Genomes	East Asian	Sub	1008	C=0.1736	A=0.8264
1000Genomes	Europe	Sub	1006	C=0.3678	A=0.6322
1000Genomes	South Asian	Sub	978	C=0.360	A=0.640
1000Genomes	American	Sub	694	C=0.317	A=0.683
Genetic variation in the Estonian population	Estonian	Study-wide	4470	C=0.3394	A=0.6606
KOREAN population from KRGDB	KOREAN	Study-wide	2930	C=0.2403	A=0.7597
HapMap	Global	Study-wide	1890	C=0.4783	A=0.5217
HapMap	American	Sub	770	C=0.345	A=0.655
HapMap	African	Sub	692	C=0.747	A=0.253
HapMap	Asian	Sub	254	C=0.185	A=0.815
HapMap	Europe	Sub	174	C=0.425	A=0.575
Korean Genome Project	KOREAN	Study-wide	1832	C=0.2462	A=0.7538
Genome-wide autozygosity in Daghestan	Global	Study-wide	1136	C=0.3882	A=0.6118
Genome-wide autozygosity in Daghestan	Daghestan	Sub	628	C=0.411	A=0.589
Genome-wide autozygosity in Daghestan	Near_East	Sub	144	C=0.417	A=0.583
Genome-wide autozygosity in Daghestan	Central Asia	Sub	122	C=0.369	A=0.631
Genome-wide autozygosity in Daghestan	Europe	Sub	108	C=0.352	A=0.648
Genome-wide autozygosity in Daghestan	South Asian	Sub	98	C=0.26	A=0.74
Genome-wide autozygosity in Daghestan	Caucasus	Sub	36	C=0.42	A=0.58
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.385	A=0.615
CNV burdens in cranial meningiomas	Global	Study-wide	784	C=0.205	A=0.795
CNV burdens in cranial meningiomas	CRM	Sub	784	C=0.205	A=0.795
Chileans	Chilean	Study-wide	626	C=0.291	A=0.709
Northern Sweden	ACPOP	Study-wide	600	C=0.385	A=0.615
SGDP_PRJ	Global	Study-wide	460	C=0.226	A=0.774
Qatari	Global	Study-wide	216	C=0.449	A=0.551
A Vietnamese Genetic Variation Database	Global	Study-wide	216	C=0.144	A=0.856
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	78	C=0.56	A=0.44
Siberian	Global	Study-wide	50	C=0.20	A=0.80
The Danish reference pan genome	Danish	Study-wide	40	C=0.42	A=0.57

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.117179265C>A
GRCh38.p14 chr 1	NC_000001.11:g.117179265C>G
GRCh38.p14 chr 1	NC_000001.11:g.117179265C>T
GRCh37.p13 chr 1	NC_000001.10:g.117721887C>A
GRCh37.p13 chr 1	NC_000001.10:g.117721887C>G
GRCh37.p13 chr 1	NC_000001.10:g.117721887C>T

Gene: VTCN1, V-set domain containing T cell activation inhibitor 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
VTCN1 transcript variant 2	NM_001253849.2:c.-253-909… NM_001253849.2:c.-253-9094G>T	N/A	Intron Variant
VTCN1 transcript variant 3	NM_001253850.2:c.33-9094G… NM_001253850.2:c.33-9094G>T	N/A	Intron Variant
VTCN1 transcript variant 1	NM_024626.4:c.33-9094G>T	N/A	Intron Variant
VTCN1 transcript variant 4	NR_045603.2:n.	N/A	Intron Variant
VTCN1 transcript variant 5	NR_045604.2:n.	N/A	Intron Variant
VTCN1 transcript variant X1	XM_011542143.2:c.182+1155… XM_011542143.2:c.182+1155G>T	N/A	Intron Variant
VTCN1 transcript variant X2	XM_017002335.3:c.-231-709… XM_017002335.3:c.-231-7093G>T	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	A	G	T
GRCh38.p14 chr 1	NC_000001.11:g.117179265=	NC_000001.11:g.117179265C>A	NC_000001.11:g.117179265C>G	NC_000001.11:g.117179265C>T
GRCh37.p13 chr 1	NC_000001.10:g.117721887=	NC_000001.10:g.117721887C>A	NC_000001.10:g.117721887C>G	NC_000001.10:g.117721887C>T
VTCN1 transcript variant 2	NM_001253849.1:c.-253-9094=	NM_001253849.1:c.-253-9094G>T	NM_001253849.1:c.-253-9094G>C	NM_001253849.1:c.-253-9094G>A
VTCN1 transcript variant 2	NM_001253849.2:c.-253-9094=	NM_001253849.2:c.-253-9094G>T	NM_001253849.2:c.-253-9094G>C	NM_001253849.2:c.-253-9094G>A
VTCN1 transcript variant 3	NM_001253850.1:c.33-9094=	NM_001253850.1:c.33-9094G>T	NM_001253850.1:c.33-9094G>C	NM_001253850.1:c.33-9094G>A
VTCN1 transcript variant 3	NM_001253850.2:c.33-9094=	NM_001253850.2:c.33-9094G>T	NM_001253850.2:c.33-9094G>C	NM_001253850.2:c.33-9094G>A
VTCN1 transcript variant 1	NM_024626.3:c.33-9094=	NM_024626.3:c.33-9094G>T	NM_024626.3:c.33-9094G>C	NM_024626.3:c.33-9094G>A
VTCN1 transcript variant 1	NM_024626.4:c.33-9094=	NM_024626.4:c.33-9094G>T	NM_024626.4:c.33-9094G>C	NM_024626.4:c.33-9094G>A
VTCN1 transcript variant X1	XM_011542143.2:c.182+1155=	XM_011542143.2:c.182+1155G>T	XM_011542143.2:c.182+1155G>C	XM_011542143.2:c.182+1155G>A
VTCN1 transcript variant X2	XM_017002335.3:c.-231-7093=	XM_017002335.3:c.-231-7093G>T	XM_017002335.3:c.-231-7093G>C	XM_017002335.3:c.-231-7093G>A

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

87 SubSNP, 27 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SC_SNP	ss18091548	Feb 27, 2004 (120)
2	SC_SNP	ss18265440	Feb 27, 2004 (120)
3	CSHL-HAPMAP	ss19847489	Feb 27, 2004 (120)
4	SSAHASNP	ss20543256	Apr 05, 2004 (121)
5	AFFY	ss66486692	Nov 29, 2006 (127)
6	AFFY	ss76307872	Dec 07, 2007 (129)
7	HGSV	ss77510421	Dec 07, 2007 (129)
8	KRIBB_YJKIM	ss82768617	Dec 15, 2007 (130)
9	BCMHGSC_JDW	ss87740071	Mar 23, 2008 (129)
10	HUMANGENOME_JCVI	ss97970344	Feb 06, 2009 (130)
11	BGI	ss106597731	Feb 06, 2009 (130)
12	1000GENOMES	ss108551610	Jan 23, 2009 (130)
13	ENSEMBL	ss138066590	Dec 01, 2009 (131)
14	ENSEMBL	ss139265448	Dec 01, 2009 (131)
15	GMI	ss155582534	Dec 01, 2009 (131)
16	ILLUMINA	ss159922852	Dec 01, 2009 (131)
17	COMPLETE_GENOMICS	ss165097095	Jul 04, 2010 (132)
18	COMPLETE_GENOMICS	ss167044530	Jul 04, 2010 (132)
19	AFFY	ss173206341	Jul 04, 2010 (132)
20	BUSHMAN	ss198981851	Jul 04, 2010 (132)
21	BCM-HGSC-SUB	ss205384966	Jul 04, 2010 (132)
22	1000GENOMES	ss218618264	Jul 14, 2010 (132)
23	1000GENOMES	ss230707349	Jul 14, 2010 (132)
24	1000GENOMES	ss238361014	Jul 15, 2010 (132)
25	BL	ss253412962	May 09, 2011 (134)
26	GMI	ss275993168	May 04, 2012 (137)
27	GMI	ss284128112	Apr 25, 2013 (138)
28	PJP	ss290606626	May 09, 2011 (134)
29	ILLUMINA	ss479757345	Sep 08, 2015 (146)
30	TISHKOFF	ss554623345	Apr 25, 2013 (138)
31	SSMP	ss648338845	Apr 25, 2013 (138)
32	EVA-GONL	ss975612555	Aug 21, 2014 (142)
33	JMKIDD_LAB	ss1068223466	Aug 21, 2014 (142)
34	1000GENOMES	ss1292594206	Aug 21, 2014 (142)
35	HAMMER_LAB	ss1397258693	Sep 08, 2015 (146)
36	DDI	ss1425948907	Apr 01, 2015 (144)
37	EVA_GENOME_DK	ss1574348652	Apr 01, 2015 (144)
38	EVA_DECODE	ss1584994947	Apr 01, 2015 (144)
39	EVA_UK10K_ALSPAC	ss1601078695	Apr 01, 2015 (144)
40	EVA_UK10K_ALSPAC	ss1601078696	Apr 01, 2015 (144)
41	EVA_UK10K_TWINSUK	ss1644072728	Apr 01, 2015 (144)
42	EVA_UK10K_TWINSUK	ss1644072729	Apr 01, 2015 (144)
43	EVA_SVP	ss1712366387	Apr 01, 2015 (144)
44	WEILL_CORNELL_DGM	ss1918811148	Feb 12, 2016 (147)
45	GENOMED	ss1966850674	Jul 19, 2016 (147)
46	JJLAB	ss2019931079	Sep 14, 2016 (149)
47	USC_VALOUEV	ss2147949873	Dec 20, 2016 (150)
48	HUMAN_LONGEVITY	ss2166048611	Dec 20, 2016 (150)
49	SYSTEMSBIOZJU	ss2624474548	Nov 08, 2017 (151)
50	GRF	ss2697880732	Nov 08, 2017 (151)
51	GNOMAD	ss2760022104	Nov 08, 2017 (151)
52	SWEGEN	ss2987503639	Nov 08, 2017 (151)
53	SWEGEN	ss2987503640	Nov 08, 2017 (151)
54	BIOINF_KMB_FNS_UNIBA	ss3023729335	Nov 08, 2017 (151)
55	CSHL	ss3343653627	Nov 08, 2017 (151)
56	ILLUMINA	ss3636024947	Oct 11, 2018 (152)
57	URBANLAB	ss3646760818	Oct 11, 2018 (152)
58	EGCUT_WGS	ss3655594615	Jul 12, 2019 (153)
59	EVA_DECODE	ss3687609701	Jul 12, 2019 (153)
60	ACPOP	ss3727423296	Jul 12, 2019 (153)
61	EVA	ss3746721981	Jul 12, 2019 (153)
62	PACBIO	ss3783530462	Jul 12, 2019 (153)
63	PACBIO	ss3789170435	Jul 12, 2019 (153)
64	PACBIO	ss3794043396	Jul 12, 2019 (153)
65	KHV_HUMAN_GENOMES	ss3799723330	Jul 12, 2019 (153)
66	EVA	ss3826390784	Apr 25, 2020 (154)
67	EVA	ss3836586310	Apr 25, 2020 (154)
68	EVA	ss3841994858	Apr 25, 2020 (154)
69	SGDP_PRJ	ss3849731364	Apr 25, 2020 (154)
70	KRGDB	ss3894836071	Apr 25, 2020 (154)
71	KOGIC	ss3945326918	Apr 25, 2020 (154)
72	EVA	ss3984463649	Apr 25, 2021 (155)
73	EVA	ss3984822004	Apr 25, 2021 (155)
74	TOPMED	ss4465054971	Apr 25, 2021 (155)
75	TOMMO_GENOMICS	ss5145861027	Apr 25, 2021 (155)
76	1000G_HIGH_COVERAGE	ss5243747730	Oct 12, 2022 (156)
77	EVA	ss5321443241	Oct 12, 2022 (156)
78	HUGCELL_USP	ss5444658533	Oct 12, 2022 (156)
79	1000G_HIGH_COVERAGE	ss5516813879	Oct 12, 2022 (156)
80	SANFORD_IMAGENETICS	ss5626376999	Oct 12, 2022 (156)
81	TOMMO_GENOMICS	ss5671182983	Oct 12, 2022 (156)
82	YY_MCH	ss5800964901	Oct 12, 2022 (156)
83	EVA	ss5832538311	Oct 12, 2022 (156)
84	EVA	ss5832538312	Oct 12, 2022 (156)
85	EVA	ss5849083353	Oct 12, 2022 (156)
86	EVA	ss5909962996	Oct 12, 2022 (156)
87	EVA	ss5938248133	Oct 12, 2022 (156)
88	1000Genomes	NC_000001.10 - 117721887	Oct 11, 2018 (152)
89	1000Genomes_30x	NC_000001.11 - 117179265	Oct 12, 2022 (156)
90	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 1870888 (NC_000001.10:117721886:C:C 1394/3854, NC_000001.10:117721886:C:A 2460/3854) Row 1870889 (NC_000001.10:117721886:C:C 3852/3854, NC_000001.10:117721886:C:G 2/3854)	-	Oct 11, 2018 (152)
91	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 1870888 (NC_000001.10:117721886:C:C 1394/3854, NC_000001.10:117721886:C:A 2460/3854) Row 1870889 (NC_000001.10:117721886:C:C 3852/3854, NC_000001.10:117721886:C:G 2/3854)	-	Oct 11, 2018 (152)
92	Chileans	NC_000001.10 - 117721887	Apr 25, 2020 (154)
93	Genome-wide autozygosity in Daghestan	NC_000001.9 - 117523410	Apr 25, 2020 (154)
94	Genetic variation in the Estonian population	NC_000001.10 - 117721887	Oct 11, 2018 (152)
95	The Danish reference pan genome	NC_000001.10 - 117721887	Apr 25, 2020 (154)
96	gnomAD - Genomes Submission ignored due to conflicting rows: Row 23874147 (NC_000001.11:117179264:C:A 77784/139992) Row 23874148 (NC_000001.11:117179264:C:G 7/140034)	-	Apr 25, 2021 (155)
97	gnomAD - Genomes Submission ignored due to conflicting rows: Row 23874147 (NC_000001.11:117179264:C:A 77784/139992) Row 23874148 (NC_000001.11:117179264:C:G 7/140034)	-	Apr 25, 2021 (155)
98	Genome of the Netherlands Release 5	NC_000001.10 - 117721887	Apr 25, 2020 (154)
99	HapMap	NC_000001.11 - 117179265	Apr 25, 2020 (154)
100	KOREAN population from KRGDB	NC_000001.10 - 117721887	Apr 25, 2020 (154)
101	Korean Genome Project	NC_000001.11 - 117179265	Apr 25, 2020 (154)
102	Northern Sweden	NC_000001.10 - 117721887	Jul 12, 2019 (153)
103	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000001.10 - 117721887	Apr 25, 2021 (155)
104	CNV burdens in cranial meningiomas	NC_000001.10 - 117721887	Apr 25, 2021 (155)
105	Qatari	NC_000001.10 - 117721887	Apr 25, 2020 (154)
106	SGDP_PRJ	NC_000001.10 - 117721887	Apr 25, 2020 (154)
107	Siberian	NC_000001.10 - 117721887	Apr 25, 2020 (154)
108	8.3KJPN	NC_000001.10 - 117721887	Apr 25, 2021 (155)
109	14KJPN	NC_000001.11 - 117179265	Oct 12, 2022 (156)
110	TopMed	NC_000001.11 - 117179265	Apr 25, 2021 (155)
111	UK 10K study - Twins Submission ignored due to conflicting rows: Row 1870888 (NC_000001.10:117721886:C:C 1312/3708, NC_000001.10:117721886:C:A 2396/3708) Row 1870889 (NC_000001.10:117721886:C:C 3707/3708, NC_000001.10:117721886:C:G 1/3708)	-	Oct 11, 2018 (152)
112	UK 10K study - Twins Submission ignored due to conflicting rows: Row 1870888 (NC_000001.10:117721886:C:C 1312/3708, NC_000001.10:117721886:C:A 2396/3708) Row 1870889 (NC_000001.10:117721886:C:C 3707/3708, NC_000001.10:117721886:C:G 1/3708)	-	Oct 11, 2018 (152)
113	A Vietnamese Genetic Variation Database	NC_000001.10 - 117721887	Jul 12, 2019 (153)
114	ALFA	NC_000001.11 - 117179265	Apr 25, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs59713118	Feb 27, 2009 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss77510421	NC_000001.8:117433928:C:A	NC_000001.11:117179264:C:A	(self)
19962, ss87740071, ss108551610, ss165097095, ss167044530, ss198981851, ss205384966, ss253412962, ss275993168, ss284128112, ss290606626, ss1397258693, ss1584994947, ss1712366387	NC_000001.9:117523409:C:A	NC_000001.11:117179264:C:A	(self)
3375704, 19710, 1332863, 1680768, 812837, 2013465, 708161, 47931, 12961, 853078, 1748344, 466227, 3830334, 404001, ss218618264, ss230707349, ss238361014, ss479757345, ss554623345, ss648338845, ss975612555, ss1068223466, ss1292594206, ss1425948907, ss1574348652, ss1601078695, ss1644072728, ss1918811148, ss1966850674, ss2019931079, ss2147949873, ss2624474548, ss2697880732, ss2760022104, ss2987503639, ss3343653627, ss3636024947, ss3655594615, ss3727423296, ss3746721981, ss3783530462, ss3789170435, ss3794043396, ss3826390784, ss3836586310, ss3849731364, ss3894836071, ss3984463649, ss3984822004, ss5145861027, ss5321443241, ss5626376999, ss5832538311, ss5938248133	NC_000001.10:117721886:C:A	NC_000001.11:117179264:C:A	(self)
4339814, 163250, 1704919, 5020087, 28661306, 3916094163, ss2166048611, ss3023729335, ss3646760818, ss3687609701, ss3799723330, ss3841994858, ss3945326918, ss4465054971, ss5243747730, ss5444658533, ss5516813879, ss5671182983, ss5800964901, ss5849083353, ss5909962996	NC_000001.11:117179264:C:A	NC_000001.11:117179264:C:A	(self)
ss18091548, ss18265440, ss19847489, ss20543256	NT_004754.15:1637471:C:A	NC_000001.11:117179264:C:A	(self)
ss66486692, ss76307872, ss82768617, ss97970344, ss106597731, ss138066590, ss139265448, ss155582534, ss159922852, ss173206341	NT_032977.9:87693804:C:A	NC_000001.11:117179264:C:A	(self)
ss1601078696, ss1644072729, ss2760022104, ss2987503640	NC_000001.10:117721886:C:G	NC_000001.11:117179264:C:G	(self)
3916094163, ss2166048611	NC_000001.11:117179264:C:G	NC_000001.11:117179264:C:G	(self)
ss5832538312	NC_000001.10:117721886:C:T	NC_000001.11:117179264:C:T
3916094163	NC_000001.11:117179264:C:T	NC_000001.11:117179264:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

4 citations for rs10801935

PMID	Title	Author	Year	Journal
19903360	B7-H4 gene polymorphisms are associated with sporadic breast cancer in a Chinese Han population.	Zhang J et al.	2009	BMC cancer
25385143	The Immune Regulator VTCN1 Gene Polymorphisms and Its Impact on Susceptibility to Breast Cancer.	Tsai SM et al.	2015	Journal of clinical laboratory analysis
28425229	Association of B7-H4 gene polymorphisms in urothelial bladder cancer.	Özgöz A et al.	2017	Turkish journal of medical sciences
34555253	Association analysis of B7-H3 and B7-H4 gene single nucleotide polymorphisms in susceptibility to ankylosing spondylitis in eastern Chinese Han population.	Chen Y et al.	2021	International journal of immunogenetics

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs10801935