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Reference SNP (refSNP) Cluster Report: rs10521157                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.1380/691 (1000 Genomes)
A=0.1695/21283 (TOPMED)
HGVS Names
  • CM000679.2:g.9433053G>A
  • NC_000017.10:g.9336370G>A
  • NC_000017.11:g.9433053G>A
  • NG_047110.1:g.147906C>T
  • NM_004853.2:c.542-54400C>T
  • NR_033656.1:n.486-54400C>T
  • XR_934120.2:n.718+4744C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282687005 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10521157 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss14924307PERLEGEN|PS03707128byFreqfwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc11/13/0304/07/04119Genomicunknown
ss24700870PERLEGEN|afd3707128byFreqfwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc08/10/0409/13/04123Genomicunknown
ss44048899ABI|hCV3064106byFreqfwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc07/18/0511/03/06126Genomicunknown
ss65998556AFFY|SNP_A-1727952fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/26/0610/26/06127Genomicunknown
ss66218928AFFY|SNP_A-4247919byFreqfwd/TA/Ggatatggatgcagtcaggaaaccagttgtgaa10/27/0603/31/08127Genomicunknown
ss66666449ILLUMINA|HumanHap300v1.1_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc11/09/0611/09/06127Genomicunknown
ss66895888ILLUMINA|HumanHap550v1.1_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc11/14/0611/14/06127Genomicunknown
ss67005214ILLUMINA|HumanHap650Yv1.0_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc11/14/0611/14/06127Genomicunknown
ss69191066PERLEGEN|PGP03707128byFreqfwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc01/30/0703/31/08127Genomicunknown
ss70376582ILLUMINA|HumanHap300v2.0_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc04/18/0711/18/07127Genomicunknown
ss70491937ILLUMINA|HumanHap550v3.0__rs10521157rev/BC/Tggactagaactattttcacaactggtttcctgactgcatccatatctgtgtggccttaat04/20/0703/30/08130Genomicunknown
ss71016571ILLUMINA|HumanHap650Yv3.0_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc04/23/0704/23/07127Genomicunknown
ss75589100ILLUMINA|ILMN_Human_1M_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc08/28/0708/29/07129Genomicunknown
ss76365264AFFY|AFFY_6_1M_SNP_A-4247919byFreqfwd/TA/Ggatatggatgcagtcaggaaaccagttgtgaa08/28/0703/07/10129Genomicunknown
ss84982445KRIBB_YJKIM|KHS866053fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc12/04/0712/08/07130Genomicunknown
ss90528910BCMHGSC_JDW|JWB-0999344fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc02/26/0802/29/08129Genomicunknown
ss96579169HUMANGENOME_JCVI|1103645276887fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc03/26/0803/26/08130Genomicunknown
ss121370177ILLUMINA|HumanCNV370v1_C_rs10521157fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc04/14/0904/14/09131Genomicunknown
ss132652235ENSEMBL|ENSSNP1387456fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc12/08/0810/15/09131Genomicunknown
ss136969779ENSEMBL|ENSSNP11201898fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc05/15/0905/15/09131Genomicunknown
ss152792866ILLUMINA|Human610_Quadv1_B_rs10521157-127_B_R_1501608407rev/BC/Tggactagaactattttcacaactggtttcctgactgcatccatatctgtgtggccttaat06/18/0906/19/09131Genomicunknown
ss159136733ILLUMINA|Human660W-Quad_v1_A_rs10521157-128_B_R_1501608407rev/BC/Tggactagaactattttcacaactggtttcctgactgcatccatatctgtgtggccttaat07/06/0907/06/09131Genomicunknown
ss159909797ILLUMINA|HumanOmni1-Quad_v1-0_B_rs10521157-128_B_R_1501608407rev/BC/Tggactagaactattttcacaactggtttcctgactgcatccatatctgtgtggccttaat08/04/0910/01/09131Genomicunknown
ss169563396ILLUMINA|HumanCNV370-Quadv3_C_rs10521157-127_B_R_1501608407rev/BC/Tggactagaactattttcacaactggtttcctgactgcatccatatctgtgtggccttaat10/01/0910/02/09132Genomicunknown
ss170369431ILLUMINA|Human1M-Duov3_B_rs10521157-127_B_R_1501608407rev/BC/Tggactagaactattttcacaactggtttcctgactgcatccatatctgtgtggccttaat10/01/0910/01/09132Genomicunknown
ss173392031AFFY|GenomeWideSNP_5_SNP_A-4247919fwd/TA/Ggatatggatgcagtcaggaaaccagttgtgaa10/01/0910/03/09132Genomicunknown
ss207891072BCM-HGSC-SUB|BCM_CMT_1011-2929026fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc03/15/1003/19/10132Genomicunknown
ss2109076191000GENOMES|CEU.trio.3.2010_150365_chr17_9277095fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc03/29/1003/29/10132Genomicunknown
ss2274561801000GENOMES|pilot_1_YRI_9265863_chr17_9277095fwd/A/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc04/22/1004/22/10132Genomicunknown
ss2371784871000GENOMES|pilot_1_CEU_6783116_chr17_9277095fwd/A/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc05/01/1005/01/10132Genomicunknown
ss282687005GMI|GMI_AK_SNP_7007422fwd/A/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc12/16/1012/16/10137Genomicunknown
ss292012766PJP|SNP_1519124_chr17_9277095fwd/A/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc01/21/1101/21/11134Genomicunknown
ss479316709ILLUMINA|HumanOmni2.5-4v1_B_rs10521157-128_B_R_1772831382fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct01/30/1210/28/16137Genomicunknown
ss479319923ILLUMINA|HumanOmniExpress-12v1_C_rs10521157-131_B_R_1857121558fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct01/30/1210/27/16137Genomicunknown
ss479705074ILLUMINA|HumanOmni1-Quad_v1-0_C_rs10521157-131_B_R_1865178567fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct01/30/1208/28/15146Genomicunknown
ss484458669ILLUMINA|HumanOmni2.5-4v1_D_rs10521157-131_B_R_1857121558fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct01/30/1210/27/16137Genomicunknown
ss491517259EXOME_CHIP|.GWAS._233485_chr_17_9336370fwd/TA/Gattaaggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttctagtcc03/05/1203/05/12137Genomicunknown
ss536623594ILLUMINA|HumanOmni5-4v1_B_rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct06/22/1208/29/15146Genomicunknown
ss660948619SSMP|17_9336370fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct12/14/1202/14/15138Genomicunknown
ss779027288ILLUMINA|HumanOmni25Exome-8v1_A_rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/30/1307/10/15146Genomicunknown
ss780680604ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs10521157-131_B_R_1990478023fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/30/1307/10/15146Genomicunknown
ss782675894ILLUMINA|HumanOmni2.5-4v1_H_rs10521157-131_B_R_1857121558fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/30/1307/29/15146Genomicunknown
ss783353885ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs10521157-131_B_R_1990478023fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/31/1306/19/15146Genomicunknown
ss783644545ILLUMINA|HumanOmniExpressExome-8v1_A_rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/31/1306/19/15146Genomicunknown
ss825346193ILLUMINA|HumanCNV370v1_C_rs10521157-126_B_R_IFB1135740779:0fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct06/24/1311/21/14144Genomicunknown
ss831926626ILLUMINA|HumanOmniExpress-12v1_H_rs10521157-131_B_R_1857121558fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct09/17/1306/18/15146Genomicunknown
ss834489955ILLUMINA|HumanOmni2.5-8v1_A_rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct09/18/1307/29/15146Genomicunknown
ss992912422EVA-GONL|EVA-GONL_rs10521157fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct04/23/1404/30/14142Genomicunknown
ss1080924086JMKIDD_LAB|HGDP_WGS_chr17_9336370fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct07/10/1407/12/14142Genomicunknown
ss13578658111000GENOMES|PHASE3_V1_71364951fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct08/16/1408/16/14142Genomicunknown
ss1397725984HAMMER_LAB|HAMMER_LAB_rs10521157fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct09/30/1409/30/14146Genomicunknown
ss1427974334DDI|DDI_rs10521157fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct11/04/1411/04/14144Genomicunknown
ss1578084508EVA_GENOME_DK|EVA_GENOME_DK_snv_rs10521157fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct02/19/1502/19/15144Genomicunknown
ss1635267765EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_17_9336370_39422009fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct03/04/1503/04/15144Genomicunknown
ss1678261798EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_17_9336370_39422009fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct03/04/1503/04/15144Genomicunknown
ss1696953476EVA_DECODE|EVA_DECODE_17_9277095_79480_rs10521157fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct03/02/1503/04/15144Genomicunknown
ss1713569234EVA_SVP|EVA_SVP_1263601fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct03/12/1503/12/15144Genomicunknown
ss1752245995ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs10521157-131_B_R_1990478023fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/27/1506/09/15146Genomicunknown
ss1752245996ILLUMINA|OmniExpressExome-8v1-1_B_rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/27/1506/09/15146Genomicunknown
ss1917914693ILLUMINA|HumanExome-12v1-1_B_exm-rs10521157-131_B_R_1990478023fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/16/1510/16/15147Genomicunknown
ss1936359356WEILL_CORNELL_DGM|SNV:chr17:9336370fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/16/1510/19/15147Genomicunknown
ss1946428340ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs10521157-131_B_R_1990478023fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/29/1510/29/15147Genomicunknown
ss1946428341ILLUMINA|HumanCoreExome-12v1-0_C_rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/29/1510/29/15147Genomicunknown
ss1959723668ILLUMINA|exm-rs10521157-131_B_R_1990478023fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct11/13/1511/13/15147Genomicunknown
ss1959723669ILLUMINA|rs10521157-131_B_R_1885471643fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct11/13/1511/13/15147Genomicunknown
ss1966653040AMU|chr17_9336370fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct01/29/1601/29/16147Genomicunknown
ss2028967575JJLAB|SNP9470130fwd/TA/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct08/29/1608/31/16149Genomicunknown
ss2157416667USC_VALOUEV|NC_000017.10:g.9336370G>Afwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct11/17/1611/17/16150Genomicunknown
ss2215428293HUMAN_LONGEVITY|HLI-17-9433053-G-Afwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct11/18/1611/18/16150Genomicunknown
ss2380279274TOPMED|17_9336370_G/Afwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct11/19/1611/19/16150Genomicunknown
ss2633374500ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs10521157-131_T_F_213fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct02/02/1702/02/17151Genomicunknown
ss2633374501ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs10521157-131_B_R_1885471fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct02/02/1702/02/17151Genomicunknown
ss2633374502ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs10521157-131_T_F_213fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct02/02/1702/02/17151Genomicunknown
ss2710844282ILLUMINA|Consortium-OncoArray_15047405_A_rs10521157-131_B_R_1885471643fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct03/22/1703/22/17151Genomicunknown
ss2947584724GNOMAD|rs10521157fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/23/1705/23/17151Genomicunknown
ss2985085845AFFY|Axiom_PsorMich_Affx-14466528fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/24/1705/24/17151Genomicunknown
ss3015180002SWEGEN|NC_000017.10:g.9336370G>Afwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct05/30/1705/30/17151Genomicunknown
ss3021754564ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs10521157-131_B_R_1990478023fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct06/28/1706/28/17151Genomicunknown
ss3021754565ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs10521157-138_B_R_2268605324fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct06/28/1706/28/17151Genomicunknown
ss3028303221BIOINF_KMB_FNS_UNIBA|17.9433053G>Afwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct07/05/1707/05/17151Genomicunknown
ss3257029591TOPMED|TOPMed_freeze_5?chr17:9,433,053fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/01/1710/01/17151Genomicunknown
ss3351647496CSHL|rs10521157fwd/A/Gggccacacagatatggatgcagtcaggaaaccagttgtgaaaatagttct10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10521157|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CTAAAATAAA AGATGAGGAA GCAATTTTAA ATGCAGTCAC CACAAATGTG TTTTGGGAAC
 TTTCACCTTG TCTCTCATAA ACTAGAAAGT GTACTTCATG TTCCTTTTGG TTTCGAATGA
 GCAAGGCATT TCAACTATTA ACATTTCATT TCCACCACGT GTCTGTTTCA GAGCTAGCAG
 CTGGCCTATT TATTTTGCTA GCTGGTGATA GAATTAAATA CAGAGTCTTT GAAAACATTT
 ACAAGCTTTC CCTCTAACCT TCTGTGTACT TTCCAAATTA GGCTACTTTG ATTGTTATTA
 GCTAAAGGTT TACGTACTGG AATACTAACA CTGTTACCTT CAGAGTAAAT TGTTTATAGC
 TCAGGTGCAG TTTAGAACAT TTTCCTCCAT GGAATACTCT TGAGATTGAG GAGAAGAAAG
 TTGAACTGGT TCACTCTGGA TCAACAAGTT TCCTTTGTGA GTCAAACAAT ATTAAGGCCA
 CACAGATATG GATGCAGTCA
 R
 GGAAACCAGT TGTGAAAATA GTTCTAGTCC TCTACAAAAC CACAGGCTTC CTTTGTGAGC
 TCCCAAATGC TTTATAATCT CAAAATCACC ATCGTCATAA TGCACTCCTA AGATTTATTC
 TTTGACACTA GCGTTTTGAT GTGGAAGACA AGGCATACGC CTGGACCCCA GGCCAGTGTG
 GGTTCAAATC ACGTCTCCTT CACTTATGAT GAGCTAGACG GTCTTAACCA AATAACCCAA
 GTCTTTAGTT TCAAAATCAG CAAAACGGAA ATAGTAATTT CCACTTCATA GCTTTGTCGT
 GAGCACTTGC ATTGCACAGA TGCTCAATTA GTGGTTTGGG ATGAAATCAA AGATCCTTCA
 TCACTATAAG CTTTTCTCAA TCTCTTCGGC CCACAATATC ACTCATGAAA AGCATCCATT
 CATTCTTTCA TTCAGTCAAA AACTACCTAT TGGCCCTACT GGAGATAAGA AGTTCCTCCT
 CCATAGATTG TGATGATGGT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000017.9 ABBA01054949
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA
A/A
A/G
G
G/G
HWPA
G
ss132652235ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ss1357865811EAS 1008AF 0.018800000.98120004
EUR 1006AF 0.261400010.73860002
AFR 1322AF 0.051400000.94859999
AMR 694AF 0.211799990.78820002
SAS 978AF 0.198400010.80159998
ss136969779ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss14924307AfAmAfrican American 12IG 1.00000000 1.00000000
CaucasianEuropean 24IG 0.41666666 0.583333310.583882000.208333330.79166669
AsianAsian 12IG 1.00000000 1.00000000
CEPHEuropean 10IG 1.00000000 1.00000000
PDpanelGlobal 48IG 0.25000000 0.750000000.751830000.125000000.87500000
CHMJAsian 74IG0.02702703 0.97297299 0.027027030.97297299
ss227456180pilot_1_YRI_low_coverage_panel 118AF 0.025423730.97457629
ss237178487pilot_1_CEU_low_coverage_panel 120AF 0.250000000.75000000
ss24700870AFD_EUR_PANELEuropean 48IG 0.083333340.29166666 0.625000000.402784000.229166670.77083331
AFD_AFR_PANELAfrican American 46IG 0.08695652 0.913043501.000000000.043478260.95652175
AFD_CHN_PANELAsian 48IG 0.04166667 0.958333311.000000000.020833330.97916669
ss44048899HapMap-CEUEuropean 226IG 0.097345140.35398230 0.548672560.250592000.274336280.72566372
HapMap-HCBAsian 86IG 1.00000000 1.00000000
HapMap-JPTAsian 170IG 0.02352941 0.976470591.000000000.011764710.98823529
HapMap-YRISub-Saharan African 226IG 0.03539823 0.964601761.000000000.017699110.98230088
HAPMAP-ASW 98IG 0.32653061 0.673469360.479500000.163265300.83673471
HAPMAP-CHBAsian 82IG 0.07317073 0.926829281.000000000.036585360.96341461
HAPMAP-CHD 170IG 0.02352941 0.976470591.000000000.011764710.98823529
HAPMAP-GIH 176IG 0.045454550.40909091 0.545454560.402784000.250000000.75000000
HAPMAP-LWK 180IG 0.07777778 0.922222201.000000000.038888890.96111113
HAPMAP-MEX 100IG 0.040000000.28000000 0.680000010.751830000.180000010.81999999
HAPMAP-MKK 286IG 0.15384616 0.846153860.751830000.076923080.92307693
HAPMAP-TSI 176IG 0.136363640.28409091 0.579545440.010028000.278409090.72159094
ss66218928HapMap-CEUEuropean 118IG 0.016949150.35593221 0.627118650.317310000.194915250.80508476
HapMap-HCBAsian 90IG 1.00000000 1.00000000
HapMap-JPTAsian 90IG 0.02222222 0.977777781.000000000.011111110.98888886
HapMap-YRISub-Saharan African 120IG 0.05000000 0.949999991.000000000.025000000.97500002
ss69191066HapMap-CEUEuropean 120IG 0.050000000.33333334 0.616666671.000000000.216666670.78333336
HapMap-HCBAsian 90IG 1.00000000 1.00000000
HapMap-JPTAsian 90IG 1.00000000 1.00000000
HapMap-YRISub-Saharan African 120IG 0.05000000 0.949999991.000000000.025000000.97500002
ss76365264ICMHP 8IG 0.50000000 0.50000000 0.250000000.75000000
ss96579169J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.238+/-0.2500000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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