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Reference SNP (refSNP) Cluster Report: rs10260404                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.3065/1535 (1000 Genomes)
C=0.3479/43685 (TOPMED)
HGVS Names
  • CM000669.2:g.154513713T>C
  • NC_000007.13:g.154210798T>C
  • NC_000007.14:g.154513713T>C
  • NG_033878.1:g.631380T>C
  • NM_001039350.2:c.266-26819T>C
  • NM_001290252.1:c.272-26819T>C
  • NM_001290253.1:c.458-26819T>C
  • NM_001936.4:c.272-26819T>C
  • NM_130797.3:c.458-26819T>C
  • NW_012132919.1:g.91362T>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss279602560 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10260404 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss14130215WUGSC_SSAHASNP|chr7.NT_007914.13_14786813byFreqfwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/05/0310/25/06119Genomicunknown
ss66664978ILLUMINA|HumanHap300v1.1_rs10260404fwd/TC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/09/0611/09/06127Genomicunknown
ss66878903ILLUMINA|HumanHap550v1.1_rs10260404fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/14/0611/14/06127Genomicunknown
ss66966920ILLUMINA|HumanHap650Yv1.0_rs10260404fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/14/0611/14/06127Genomicunknown
ss70363286ILLUMINA|HumanHap300v2.0_rs10260404fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat04/18/0711/17/07127Genomicunknown
ss70474575ILLUMINA|HumanHap550v3.0__rs10260404rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg04/20/0703/29/08130Genomicunknown
ss70997109ILLUMINA|HumanHap650Yv3.0_rs10260404fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat04/23/0704/23/07127Genomicunknown
ss75576667ILLUMINA|ILMN_Human_1M_rs10260404fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat08/28/0708/29/07129Genomicunknown
ss80967075HGSV|Cor18507_SNV_20070510.chr7_153648446fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/26/0711/27/07130Genomicunknown
ss84188189HGSV|Cor18555_SNV_20070510.chr7_153648446fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/27/0712/06/07130Genomicunknown
ss84930168KRIBB_YJKIM|KHS851499fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat12/04/0712/08/07130Genomicunknown
ss85024158HGSV|Cor19240_SNV_20070510.chr7_153648446fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat11/30/0712/08/07130Genomicunknown
ss93796527BCMHGSC_JDW|JWB-2396944byFreqfwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat02/26/0809/05/14129Genomicunknown
ss1126619041000GENOMES|CEU.trio.12.15.2008_1887901_chr7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat12/17/0812/17/08130Genomicunknown
ss1146938631000GENOMES|NA19240_2008_12_16_1704408_chr7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat12/18/0812/18/08130Genomicunknown
ss116399584ILLUMINA-UK|NA18507_000193181_NCBI36.1_chr7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat01/16/0901/17/09130Genomic99 %
ss121291482ILLUMINA|HumanCNV370v1_C_rs10260404fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat04/14/0904/14/09131Genomicunknown
ss143115309ENSEMBL|ENSSNP5993217fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat06/05/0906/05/09131Genomicunknown
ss152702777ILLUMINA|Human610_Quadv1_B_rs10260404-128_T_R_1501596217rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg06/18/0906/19/09131Genomicunknown
ss159119032ILLUMINA|Human660W-Quad_v1_A_rs10260404-128_T_R_1501596217rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg07/06/0907/06/09131Genomicunknown
ss159884244ILLUMINA|HumanOmni1-Quad_v1-0_B_rs10260404-128_T_R_1501596217rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg08/04/0910/01/09131Genomicunknown
ss162871475COMPLETE_GENOMICS|NA07022_36_chr7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat09/28/0909/29/09132Genomicunknown
ss165733957COMPLETE_GENOMICS|NA19240_36_chr7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat09/29/0909/30/09132Genomicunknown
ss167290415COMPLETE_GENOMICS|NA20431_36_chr7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat09/30/0909/30/09132Genomicunknown
ss169342414ILLUMINA|HumanCNV370-Quadv3_C_rs10260404-128_T_R_1501596217rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg10/01/0910/02/09132Genomicunknown
ss169943217ILLUMINA|Human1M-Duov3_B_rs10260404-128_T_R_1501596217rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg10/01/0910/01/09132Genomicunknown
ss198526844BUSHMAN|BUSHMAN-chr7-153841730fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat02/16/1003/06/10132Genomicunknown
ss209083169ILLUMINA|ALS_iSelect_272541_A_rs10260404-127_T_R_IFB1223199359rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg03/24/1003/24/10132Genomicunknown
ss2234294191000GENOMES|pilot_1_YRI_5239102_chr7_153841731fwd/C/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat04/22/1004/22/10132Genomicunknown
ss2342363941000GENOMES|pilot_1_CEU_3841023_chr7_153841731fwd/C/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat05/01/1005/01/10132Genomicunknown
ss2411335321000GENOMES|pilot_1_CHB+JPT_3018609_chr7_153841731fwd/C/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat05/01/1005/01/10132Genomicunknown
ss254774887BL|SNP169550_7_153841731fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat08/19/1008/19/10134Genomicunknown
ss279602560GMI|GMI_AK_SNP_3922809fwd/C/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat12/16/1012/16/10137Genomicunknown
ss285752225GMI|GMI_NA10851_SNP_1764998fwd/C/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat12/17/1012/17/10138Genomicunknown
ss294008656PJP|SNP_3515014_chr7_153841731fwd/C/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat01/21/1101/21/11134Genomicunknown
ss410886158ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs10260404rev/TA/Gatacaaagctatcttgctgtgttgacatacaggcccagaccccactgggagcttgtggtg06/07/1106/07/11135Genomicunknown
ss479241361ILLUMINA|HumanOmni2.5-4v1_B_rs10260404-128_T_R_1616886599fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt01/30/1210/29/16137Genomicunknown
ss479244040ILLUMINA|HumanOmniExpress-12v1_C_rs10260404-131_T_R_1857062481fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt01/30/1210/27/16137Genomicunknown
ss479602883ILLUMINA|HumanOmni1-Quad_v1-0_C_rs10260404-131_T_R_1865620680fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt01/30/1208/28/15146Genomicunknown
ss484421382ILLUMINA|HumanOmni2.5-4v1_D_rs10260404-131_T_R_1857062481fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt01/30/1210/28/16137Genomicunknown
ss491408760EXOME_CHIP|.GWAS._124986_chr_7_154210798fwd/BC/Tcaccacaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctttgtat03/05/1203/05/12137Genomicunknown
ss536596022ILLUMINA|HumanOmni5-4v1_B_rs10260404-131_T_R_1866527376fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt06/22/1208/29/15146Genomicunknown
ss560417683TISHKOFF|snp_chr7_154210798fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt11/22/1211/23/12138Genomicunknown
ss654833643SSMP|7_154210798fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt12/14/1202/11/15138Genomicunknown
ss778353211ILLUMINA|HumanOmni25Exome-8v1_A_rs10260404-131_T_R_1866527376fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/30/1307/10/15146Genomicunknown
ss780680387ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs10260404-131_T_R_1990486917fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/30/1307/10/15146Genomicunknown
ss782657153ILLUMINA|HumanOmni2.5-4v1_H_rs10260404-131_T_R_1857062481fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/30/1307/29/15146Genomicunknown
ss783353664ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs10260404-131_T_R_1990486917fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/31/1306/19/15146Genomicunknown
ss783626267ILLUMINA|HumanOmniExpressExome-8v1_A_rs10260404-131_T_R_1967877488fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/31/1306/19/15146Genomicunknown
ss825333017ILLUMINA|HumanCNV370v1_C_rs10260404-119_T_R_IFB1135735165:0fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt06/24/1311/21/14144Genomicunknown
ss831907585ILLUMINA|HumanOmniExpress-12v1_H_rs10260404-131_T_R_1857062481fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt09/17/1306/19/15146Genomicunknown
ss833807921ILLUMINA|HumanOmni2.5-8v1_A_rs10260404-131_T_R_1866527376fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt09/18/1307/29/15146Genomicunknown
ss984988304EVA-GONL|EVA-GONL_rs10260404fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt04/23/1404/25/14142Genomicunknown
ss1075121180JMKIDD_LAB|HGDP_WGS_chr7_154210798fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt07/10/1407/11/14142Genomicunknown
ss13278509731000GENOMES|PHASE3_V1_40131251fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt08/16/1408/16/14142Genomicunknown
ss1397510835HAMMER_LAB|HAMMER_LAB_rs10260404fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt09/30/1409/30/14146Genomicunknown
ss1431339544DDI|DDI_rs10260404fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt11/04/1411/05/14144Genomicunknown
ss1582474435EVA_GENOME_DK|EVA_GENOME_DK_snv_rs10260404fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt02/19/1502/20/15144Genomicunknown
ss1594577937EVA_DECODE|EVA_DECODE_7_153841731_1186138_rs10260404fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt03/02/1503/03/15144Genomicunknown
ss1619586224EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_7_154210798_22209520fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt03/04/1503/04/15144Genomicunknown
ss1662580257EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_7_154210798_22209520fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt03/04/1503/04/15144Genomicunknown
ss1713000284EVA_SVP|EVA_SVP_694651fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt03/12/1503/12/15144Genomicunknown
ss1752673462ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs10260404-131_T_R_1990486917fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/27/1506/09/15146Genomicunknown
ss1752673463ILLUMINA|OmniExpressExome-8v1-1_B_rs10260404-131_T_R_1967877488fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/27/1506/09/15146Genomicunknown
ss1805307372HAMMER_LAB|Hsieh_4321031fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt07/15/1507/16/15146Genomicunknown
ss1917824615ILLUMINA|HumanExome-12v1-1_B_exm-rs10260404-131_T_R_1990486917fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt10/16/1510/16/15147Genomicunknown
ss1928254205WEILL_CORNELL_DGM|SNV:chr7:154210798fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt10/16/1510/17/15147Genomicunknown
ss1946225834ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs10260404-131_T_R_1990486917fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt10/29/1510/29/15147Genomicunknown
ss1959069487ILLUMINA|exm-rs10260404-131_T_R_1990486917fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt11/13/1511/13/15147Genomicunknown
ss1970858743GENOMED|rs10260404fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt02/16/1602/16/16147Genomicunknown
ss2024814859JJLAB|SNP5317414fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt08/29/1608/30/16149Genomicunknown
ss2094832337ILLUMINA|Immuno_BeadChip_11419691_B_rs10260404-131_T_R_1866527376fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt09/27/1609/27/16150Genomicunknown
ss2095204471ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs10260404-131_T_R_1866527376fwd/BC/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt09/27/1609/27/16150Genomicunknown
ss2153040817USC_VALOUEV|NC_000007.13:g.154210798T>Cfwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt11/17/1611/17/16150Genomicunknown
ss2299258507HUMAN_LONGEVITY|HLI-7-154513713-T-Cfwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt11/18/1611/18/16150Genomicunknown
ss2468836490TOPMED|7_154210798_T/Cfwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt11/20/1611/20/16150Genomicunknown
ss2626893945SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV3400808fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt01/06/1701/06/17151Genomicunknown
ss2634682678ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs10260404-131_T_R_213fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt02/02/1702/02/17151Genomicunknown
ss2634682679ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs10260404-131_T_R_1967877fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt02/02/1702/02/17151Genomicunknown
ss2634682680ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs10260404-131_T_R_213fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt02/02/1702/02/17151Genomicunknown
ss2708772459GRF|rs10260404fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt02/13/1702/13/17151Genomicunknown
ss2861157821GNOMAD|rs10260404fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/19/1705/19/17151Genomicunknown
ss2985426481AFFY|Axiom_PsorMich_Affx-30026114fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/24/1705/24/17151Genomicunknown
ss2986056576AFFY|Axiom_Smokesc1_Affx-30026114fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/24/1705/24/17151Genomicunknown
ss3002346143SWEGEN|NC_000007.13:g.154210798T>Cfwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt05/30/1705/30/17151Genomicunknown
ss3026196660BIOINF_KMB_FNS_UNIBA|7.154513713T>Cfwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt07/05/1707/05/17151Genomicunknown
ss3347934145CSHL|rs10260404fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt10/02/1710/02/17151Genomicunknown
ss3549133326TOPMED|TOPMed_freeze_5?chr7:154,513,713fwd/C/Tcaagctcccagtggggtctgggcctgtatgtcaacacagcaagatagctt10/06/1710/06/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10260404|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 TCCATCCTAC CTAATTTTAG TCAACCTGAA ACCACTGCTT TTTGTGAATA ACGAATGTCC
 AACAGAACTC CCACCAACCT CACAGTCCCA GACATCTGCA TTACTGTGGG TAGTCACTCA
 AATGTAGCTA GAGGAGGCTT TACCAGAAAA GCTAATTGCC CCAAACTTTC CTCTTGGAAT
 TAGAGTTGAG TTTTTGTTGG TTTGTTTTTT AATGTGCCCA ATTAATCTTT TATTGGTGTG
 GGACAAATGT TGAGACTAAC AAGAAGATTT TGGATAAGTG GATAACAATC TCGCACCCTA
 CATCCCTCCT TCATGGGGGA ATGTAAGTGT GGATTGACCC AAAGCAGGAA CTCTAGGGGT
 GAAGCAAGGA CTCAGCTCTG CCTTTTCATC AGCTCTGATC ATCCATTAGA GATGTCCACC
 CTGGGAAACA TGGGAAAATT TTCACACCAC CCAAAGCCCT GCACTGATTC CACCACAAGC
 TCCCAGTGGG GTCTGGGCCT
 Y
 GTATGTCAAC ACAGCAAGAT AGCTTTGTAT GAGGACAGTT TCCTTCCCAC CAGACGTTAG
 AGTCATCCTA GGAACAACTG TCCAACCCTG GGCACGTGCC ACCCAGCAGC ACTTCTGAAT
 ATGCCACTGA GGGGAGAGAT GAAATAAACA CCTACTCAAA CCCATACATC TTTCTTAAAT
 TAGCCACAAC TAATTTCTTT CATGCTGATT TTTATTTCTA AAGCTGTGAT TTCCAAAGCC
 ATAAACTTTG GGTCTGAATG AAATTAAGAA GGGTTAGAGG GCTGGGCACG GTGGCTTATG
 CCTGTAATCC TATCACTTTG GGAGGCCGAG GTAGTGGATT ACCTGAGGTC AGGAGTTCAA
 GGCCAGCCTG ATCAACATGG TGAAACCCTG TCTCTACTAA AATTCCAAAA CAATTAGGCA
 GGCATGGTGG TGGGTACCTG TAATCCTAGC TGCTTGGGAG GCTGAGGCAG GAAAATCCCT
 TGAACCCGGG AGGCAGAGGT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007914
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss116399584YRI 2IG 1.00000000 0.500000000.50000000
ss1327850973EAS 1008AF 0.152799990.84719998
EUR 1006AF 0.381700010.61830002
AFR 1322AF 0.345700000.65430003
AMR 694AF 0.282399980.71759999
SAS 978AF 0.351699980.64829999
ss143115309ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss162871475CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss165733957YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss167290415PGP 2IG 1.00000000 0.500000000.50000000
ss198526844BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss223429419pilot_1_YRI_low_coverage_panel 118AF 0.381355940.61864406
ss234236394pilot_1_CEU_low_coverage_panel 120AF 0.466666670.53333336
ss241133532pilot_1_CHB+JPT_low_coverage_panel 120AF 0.166666670.83333331
ss93796527HapMap-CEUEuropean 226IG0.194690270.486725660.318584081.000000000.438053100.56194693
HapMap-HCBAsian 86IG0.023255810.372093020.604651150.438578000.209302320.79069769
HapMap-JPTAsian 172IG 0.290697660.709302310.438578000.145348830.85465115
HapMap-YRISub-Saharan African 226IG0.097345140.469026540.433628320.583882000.331858400.66814160
HAPMAP-ASW 98IG0.081632650.326530610.591836750.438578000.244897960.75510204
HAPMAP-CHBAsian 82IG 0.317073170.682926830.527089000.158536580.84146339
HAPMAP-CHD 170IG0.035294120.305882360.658823551.000000000.188235300.81176472
HAPMAP-GIH 176IG0.159090910.488636370.352272721.000000000.403409090.59659094
HAPMAP-LWK 180IG0.100000000.455555560.444444450.751830000.327777770.67222220
HAPMAP-MEX 100IG0.060000000.440000000.500000000.527089000.280000000.72000003
HAPMAP-MKK 286IG0.055944060.314685310.629370630.479500000.213286710.78671330
HAPMAP-TSI 174IG0.183908050.471264360.344827591.000000000.419540230.58045977
ENSEMBL_Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.425+/-0.1780000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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