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Reference SNP (refSNP) Cluster Report: rs10192369                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.4986/2497 (1000 Genomes)
A=0.4605/57830 (TOPMED)
HGVS Names
  • CM000664.2:g.160524377G>A
  • NC_000002.11:g.161380888G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss15683151 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10192369 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss14056583WUGSC_SSAHASNP|chr2.NT_005403.14_11590305fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt11/05/0311/22/03119Genomicunknown
ss15683151SC_SNP|NT_005403.14_11590305byFreqfwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt11/17/0310/25/06120Genomicunknown
ss19444218CSHL-HAPMAP|CSHL-HuDD-200402.chr2.NT_005403.14_11590305fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt02/20/0403/04/04120Genomicunknown
ss21593187SSAHASNP|WGSA-200403-chr2.chr2.NT_005403.14_11590305fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt03/20/0403/20/04121Genomicunknown
ss66823862ILLUMINA|HumanHap300v1.1_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt11/09/0611/09/06127Genomicunknown
ss66875206ILLUMINA|HumanHap550v1.1_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt11/14/0611/14/06127Genomicunknown
ss66957861ILLUMINA|HumanHap650Yv1.0_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt11/14/0611/14/06127Genomicunknown
ss68833296PERLEGEN|PGP06261432byFreqfwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt01/30/0703/31/08127Genomicunknown
ss70361529ILLUMINA|HumanHap300v2.0_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt04/18/0711/17/07127Genomicunknown
ss70470779ILLUMINA|HumanHap550v3.0__rs10192369rev/BC/Tactacattttatgtattatgtctttcttctattaaaatataagctctatgagggtcggga04/20/0703/29/08130Genomicunknown
ss70992488ILLUMINA|HumanHap650Yv3.0_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt04/23/0704/23/07127Genomicunknown
ss75911974ILLUMINA|ILMN_Human_1M_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt08/28/0708/29/07129Genomicunknown
ss80026750HGSV|Cor18507_SNV_20070510.chr2_161206395fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt11/23/0711/24/07130Genomicunknown
ss84919797KRIBB_YJKIM|KHS848467fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt12/04/0712/08/07130Genomicunknown
ss96442685HUMANGENOME_JCVI|1103658270494fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt03/26/0803/26/08130Genomicunknown
ss106133507BGI|BGI_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt09/13/0806/18/09130Genomicunknown
ss1101566781000GENOMES|CEU.trio.12.15.2008_509135_chr2_161089134fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt12/17/0812/17/08130Genomicunknown
ss117944616ILLUMINA-UK|NA18507_000198858_NCBI36.1_chr2_161089134fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt01/19/0901/20/09130Genomic99 %
ss121280984ILLUMINA|HumanCNV370v1_C_rs10192369fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt04/14/0904/14/09131Genomicunknown
ss136087071ENSEMBL|ENSSNP1647416fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt12/08/0810/15/09131Genomicunknown
ss152598607ILLUMINA|Human610_Quadv1_B_rs10192369-128_B_R_1501594586rev/BC/Tactacattttatgtattatgtctttcttctattaaaatataagctctatgagggtcggga06/18/0906/19/09131Genomicunknown
ss157906581GMI|GMI_SNP_158847359fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt06/24/0906/25/09131Genomicunknown
ss159114922ILLUMINA|Human660W-Quad_v1_A_rs10192369-128_B_R_1501594586rev/BC/Tactacattttatgtattatgtctttcttctattaaaatataagctctatgagggtcggga07/06/0907/06/09131Genomicunknown
ss159876130ILLUMINA|HumanOmni1-Quad_v1-0_B_rs10192369-128_B_R_1501594586rev/BC/Tactacattttatgtattatgtctttcttctattaaaatataagctctatgagggtcggga08/04/0910/01/09131Genomicunknown
ss169309023ILLUMINA|HumanCNV370-Quadv3_C_rs10192369-128_B_R_1501594586rev/BC/Tactacattttatgtattatgtctttcttctattaaaatataagctctatgagggtcggga10/01/0910/02/09132Genomicunknown
ss169827626ILLUMINA|Human1M-Duov3_B_rs10192369-128_B_R_1501594586rev/BC/Tactacattttatgtattatgtctttcttctattaaaatataagctctatgagggtcggga10/01/0910/01/09132Genomicunknown
ss205735474BCM-HGSC-SUB|BCM_CMT_1011-346575fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt03/15/1003/16/10132Genomicunknown
ss2196157541000GENOMES|pilot_1_YRI_1425437_chr2_161089134fwd/A/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt04/22/1004/22/10132Genomicunknown
ss2314412921000GENOMES|pilot_1_CEU_1045921_chr2_161089134fwd/A/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt05/01/1005/01/10132Genomicunknown
ss2389334481000GENOMES|pilot_1_CHB+JPT_818525_chr2_161089134fwd/A/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt05/01/1005/01/10132Genomicunknown
ss276757433GMI|GMI_AK_SNP_1077642fwd/A/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt12/16/1012/16/10137Genomicunknown
ss284473169GMI|GMI_NA10851_SNP_485940fwd/A/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt12/17/1012/17/10138Genomicunknown
ss292412069PJP|SNP_1918427_chr2_161089134fwd/A/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt01/21/1101/21/11134Genomicunknown
ss479219059ILLUMINA|HumanOmni2.5-4v1_B_rs10192369-128_B_R_1777085075fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat01/30/1210/28/16137Genomicunknown
ss479221602ILLUMINA|HumanOmniExpress-12v1_C_rs10192369-131_B_R_1857041554fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat01/30/1210/27/16137Genomicunknown
ss479570666ILLUMINA|HumanOmni1-Quad_v1-0_C_rs10192369-131_B_R_1865549992fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat01/30/1208/28/15146Genomicunknown
ss484410394ILLUMINA|HumanOmni2.5-4v1_D_rs10192369-131_B_R_1857041554fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat01/30/1210/28/16137Genomicunknown
ss491326022EXOME_CHIP|.GWAS._42249_chr_2_161380888fwd/TA/Gtcccgaccctcatagagcttatattttaatagaagaaagacataatacataaaatgtagt03/05/1203/05/12137Genomicunknown
ss536587819ILLUMINA|HumanOmni5-4v1_B_rs10192369-131_B_R_1885470077fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat06/22/1208/28/15146Genomicunknown
ss555993334TISHKOFF|snp_chr2_161380888fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/22/1211/23/12138Genomicunknown
ss649638213SSMP|2_161380888fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat12/14/1202/10/15138Genomicunknown
ss778726266ILLUMINA|HumanOmni25Exome-8v1_A_rs10192369-131_B_R_1865549992fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/30/1307/09/15146Genomicunknown
ss780680347ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs10192369-131_B_R_1990477739fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/30/1307/09/15146Genomicunknown
ss782651625ILLUMINA|HumanOmni2.5-4v1_H_rs10192369-131_B_R_1857041554fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/30/1307/28/15146Genomicunknown
ss783353623ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs10192369-131_B_R_1990477739fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/31/1306/19/15146Genomicunknown
ss783620842ILLUMINA|HumanOmniExpressExome-8v1_A_rs10192369-131_B_R_1885470077fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/31/1306/19/15146Genomicunknown
ss825331260ILLUMINA|HumanCNV370v1_C_rs10192369-121_B_R_IFB1137701596:0fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat06/24/1311/21/14144Genomicunknown
ss831901967ILLUMINA|HumanOmniExpress-12v1_H_rs10192369-131_B_R_1857041554fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat09/17/1306/18/15146Genomicunknown
ss834185711ILLUMINA|HumanOmni2.5-8v1_A_rs10192369-131_B_R_1865549992fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat09/18/1307/28/15146Genomicunknown
ss977566909EVA-GONL|EVA-GONL_rs10192369fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat04/23/1404/23/14142Genomicunknown
ss1069648711JMKIDD_LAB|HGDP_WGS_chr2_161380888fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat07/10/1407/10/14142Genomicunknown
ss13001320421000GENOMES|PHASE3_V1_11235016fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat08/16/1408/16/14142Genomicunknown
ss1428799331DDI|DDI_rs10192369fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/04/1411/04/14144Genomicunknown
ss1579169099EVA_GENOME_DK|EVA_GENOME_DK_snv_rs10192369fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/19/1502/20/15144Genomicunknown
ss1587001720EVA_DECODE|EVA_DECODE_2_161089134_1203634_rs10192369fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat03/02/1503/03/15144Genomicunknown
ss1604989840EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_2_161380888_6165138fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat03/04/1503/04/15144Genomicunknown
ss1647983873EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_2_161380888_6165138fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat03/04/1503/04/15144Genomicunknown
ss1712504204EVA_SVP|EVA_SVP_198756fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat03/12/1503/12/15144Genomicunknown
ss1752319846ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs10192369-131_B_R_1990477739fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/27/1506/09/15146Genomicunknown
ss1752319847ILLUMINA|OmniExpressExome-8v1-1_B_rs10192369-131_B_R_1885470077fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/27/1506/09/15146Genomicunknown
ss1797809568HAMMER_LAB|Hsieh_1185088fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat07/15/1507/15/15146Genomicunknown
ss1917755119ILLUMINA|HumanExome-12v1-1_B_exm-rs10192369-131_B_R_1990477739fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat10/16/1510/16/15147Genomicunknown
ss1920819656WEILL_CORNELL_DGM|SNV:chr2:161380888fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat10/16/1510/16/15147Genomicunknown
ss1946056263ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs10192369-131_B_R_1990477739fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat10/29/1510/29/15147Genomicunknown
ss1946056264ILLUMINA|HumanCoreExome-12v1-0_C_rs10192369-131_B_R_1885470077fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat10/29/1510/29/15147Genomicunknown
ss1958472782ILLUMINA|exm-rs10192369-131_B_R_1990477739fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/13/1511/13/15147Genomicunknown
ss1958472783ILLUMINA|rs10192369-131_B_R_1885470077fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/13/1511/13/15147Genomicunknown
ss1968936056GENOMED|rs10192369fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/16/1602/16/16147Genomicunknown
ss2020941300JJLAB|SNP1443855fwd/TA/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat08/29/1608/30/16149Genomicunknown
ss2149006510USC_VALOUEV|NC_000002.11:g.161380888G>Afwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/17/1611/17/16150Genomicunknown
ss2235956321HUMAN_LONGEVITY|HLI-2-160524377-G-Afwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/18/1611/18/16150Genomicunknown
ss2402357903TOPMED|2_161380888_G/Afwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat11/19/1611/19/16150Genomicunknown
ss2624975339SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV910653fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat01/06/1701/06/17151Genomicunknown
ss2633696039ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs10192369-131_B_R_213fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/02/1702/02/17151Genomicunknown
ss2633696040ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs10192369-131_B_R_1885470fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/02/1702/02/17151Genomicunknown
ss2633696041ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs10192369-131_B_R_213fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/02/1702/02/17151Genomicunknown
ss2635096320ILLUMINA|Cancer_BeadChip_11459870_A_rs10192369-128_B_R_1777085075fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/02/1702/02/17151Genomicunknown
ss2703639994GRF|rs10192369fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat02/13/1702/13/17151Genomicunknown
ss2710915633ILLUMINA|Consortium-OncoArray_15047405_A_rs10192369-131_B_R_1885470077fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat03/22/1703/22/17151Genomicunknown
ss2781966636GNOMAD|rs10192369fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/17/1705/17/17151Genomicunknown
ss2990747013SWEGEN|NC_000002.11:g.161380888G>Afwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat05/30/1705/30/17151Genomicunknown
ss3022033426ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs10192369-131_B_R_1990477739fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat06/28/1706/28/17151Genomicunknown
ss3022033427ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs10192369-138_B_R_2264352025fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat06/28/1706/28/17151Genomicunknown
ss3024232784BIOINF_KMB_FNS_UNIBA|2.160524377G>Afwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat07/05/1707/05/17151Genomicunknown
ss3328308939TOPMED|TOPMed_freeze_5?chr2:160,524,377fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat10/02/1710/02/17151Genomicunknown
ss3344572120CSHL|rs10192369fwd/A/Gaccctcatagagcttatattttaatagaagaaagacataatacataaaat10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10192369|allelePos=537|totalLen=1093|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 ATTATCTCTT GACGCTTTAT ATTATTATAA ACCAGACAGT GATAATTATC TTTGCAGCCA
 AATCTGTGAA TATTCATTCA TTTCCTTAAA TTTTCCAGAA GTTGAGACAA AGGATAAAAA
 CACTTTCCAA AGGCTTTCCA TAAATATACC AAACAGCTCT CGGGGCCAGT TTTACCAGTT
 TAAGCACAAG CAACAAGGTT TGATAATACG CCCCATTTTC AGCACTGATG ATTATTAAGT
 TTTTTGGTAA TTTAATGGAT AAATACCTTA CTGTTTCAAT TTGCAGTTTT TCAACTTGTA
 GTAAAGTTAA TTTAAAAAAT AAATTAATTT TTTTATCTGG CTTGTTCTTA GCAAATAGCT
 CATTTTTTGT TGGGGGTGTT CATTCATTCT TTGTTTTTCC TGATTGTTTT CAACCTTTCC
 ACTAATTATT ATTATTATTT TTTTGAGAAT CTAATATGCT AGGCACTGTT CCACATTTTG
 GAAATACAGG AGTAAATAAA ACATAATCCC GACCCTCATA GAGCTTATAT TTTAAT
 R
 AGAAGAAAGA CATAATACAT AAAATGTAGT AGGTCAGATG GTGGTAAGCA CTGAGAAAAA
 GAAAAATAAA GCAGGCAAGG ATATGTTGGG AGTGGGGCCT TCTGAGGACC TATCAAGAGG
 GCAACATTTG AGCAGATATC TGAAGGAAGT AAGGGAATGA GCCATGTCTT TAACTGGGGT
 CAGAGCTTGC AGGCAGAGGG ACTAGCAAGT GCAGAGACTC TGGGATGGAA GTGTGCTTGC
 TATGTTTAAG GAACTTCAAA GAGGCCAGAG TGGCTGGAAC TGAGCAAGTA AGGAGAGTAT
 TAGAAGGAGA GGTCTGAGAG GTGGGAGTAC ATATGTGGGG GGCAAATCAT GTAAATACTC
 AGAGATAGAC CCTTGTAAAA TCTTTAGCTT TTACTCTGAG GAAATGGCAA ATTATTGGAA
 GGATATGAGT GGAAGAATGA CATGCTGTAA CTTATTTATT TTTTTTAATC AACCAAATTC
 AATATCTCGA TCTTGTTTTA CTTGTTTTTA GTCCTGTTCA AACAAATCAA CTGTACAAGG
 ATATTTTTGA GACAAC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_005403 ABBA01004877
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss117944616YRI 2IG 1.00000000 0.500000000.50000000
ss1300132042EAS 1008AF 0.690499960.30950001
EUR 1006AF 0.520900010.47910002
AFR 1322AF 0.212599990.78739995
AMR 694AF 0.644100010.35589999
SAS 978AF 0.575699990.42429999
ss136087071ENSEMBL_Venter 2IG1.00000000 1.00000000
ENSEMBL_celera 2IG1.00000000 1.00000000
ss15683151HapMap-CEUEuropean 222IG0.243243250.594594600.162162150.050043000.540540520.45945945
HapMap-HCBAsian 84IG0.547619040.380952390.071428571.000000000.738095220.26190478
HapMap-JPTAsian 170IG0.341176480.505882380.152941180.654721000.594117640.40588236
HapMap-YRISub-Saharan African 220IG0.036363640.372727270.590909060.438578000.222727270.77727270
HAPMAP-ASW 98IG0.081632650.408163280.510204081.000000000.285714300.71428573
HAPMAP-CHBAsian 82IG0.390243890.560975610.048780490.099721000.670731720.32926831
HAPMAP-CHD 168IG0.571428600.345238090.083333340.402784000.744047640.25595239
HAPMAP-GIH 176IG0.397727280.443181810.159090910.583882000.619318190.38068181
HAPMAP-LWK 180IG0.033333340.344444450.622222240.654721000.205555560.79444444
HAPMAP-MEX 100IG0.460000010.500000000.040000000.150222000.709999980.28999999
HAPMAP-MKK 286IG0.034965030.321678310.643356621.000000000.195804190.80419582
HAPMAP-TSI 176IG0.250000000.443181810.306818190.317310000.471590910.52840906
ss219615754pilot_1_YRI_low_coverage_panel 118AF 0.186440680.81355929
ss231441292pilot_1_CEU_low_coverage_panel 120AF 0.558333340.44166666
ss238933448pilot_1_CHB+JPT_low_coverage_panel 120AF 0.649999980.34999999
ss68833296HapMap-CEUEuropean 120IG0.283333330.500000000.216666671.000000000.533333360.46666667
HapMap-HCBAsian 90IG0.555555580.333333340.111111110.273322000.722222210.27777779
HapMap-JPTAsian 90IG0.377777790.355555560.266666680.099721000.555555580.44444445
HapMap-YRISub-Saharan African 120IG 0.366666670.633333330.317310000.183333340.81666666
ss96442685J. Craig Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.500+/-0.0010000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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