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Reference SNP (refSNP) Cluster Report: rs916977                 ** With other allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C/G (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:With other allele [ClinVar]
MAF/MinorAlleleCount:C=0.3886/1946 (1000 Genomes)
T=0.4277/53711 (TOPMED)
HGVS Names
  • CM000677.2:g.28268218T>C
  • CM000677.2:g.28268218T>G
  • NC_000015.10:g.28268218T>C
  • NC_000015.10:g.28268218T>G
  • NC_000015.9:g.28513364T>C
  • NG_016355.1:g.58932A>C
  • NG_016355.1:g.58932A>G
  • NM_004667.5:c.1598+247A>C
  • NM_004667.5:c.1598+247A>G
  • NT_187660.1:g.515449C=
  • NT_187660.1:g.515449C>G
  • NT_187660.1:g.515449C>T
  • NW_011332701.1:g.401663C=
  • NW_011332701.1:g.401663C>G
  • NW_011332701.1:g.401663C>T
  • XR_001751410.1:n.1728+247A>C
  • XR_001751410.1:n.1728+247A>G
  • XR_931930.2:n.1728+247A>C
  • XR_931930.2:n.1728+247A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282193275 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs916977 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1352559TSC-CSHL|TSC0229456byFreqfwd/TA/Gttgaccccgtgcagccttggccagccttcttctactcaaactgcatccccactgtggagt09/06/0004/07/0486Genomic95 %
ss6820954WI_SSAHASNP|NT_033278.3_117277rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa02/12/0310/10/03111Genomicunknown
ss23388292PERLEGEN|afd2587066byFreqrev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa08/10/0409/13/04123Genomicunknown
ss43791123ABI|hCV2567831rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa07/18/0507/18/05126Genomicunknown
ss65757427ILLUMINA|Human1-rs916977fwd/BA/Gttgaccccgtgcagccttggccagccttcttctactcaaactgcatccccactgtggagt10/10/0610/10/06127Genomicunknown
ss66422663AFFY|SNP_A-2145532byFreqrev/BC/Tatgcagtttgagtagaagaaggctggccaagg10/29/0608/14/07127Genomicunknown
ss69171498PERLEGEN|PGP02587066byFreqrev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa01/30/0708/14/07127Genomicunknown
ss75002265ILLUMINA|ILMN_Human_1M_rs916977fwd/TA/Gttgaccccgtgcagccttggccagccttcttctactcaaactgcatccccactgtggagt08/28/0708/29/07129Genomicunknown
ss76189315AFFY|AFFY_6_1M_SNP_A-2145532rev/BC/Tatgcagtttgagtagaagaaggctggccaagg08/28/0708/30/07129Genomicunknown
ss81444611KRIBB_YJKIM|KHS70796fwd/TA/Gttgaccccgtgcagccttggccagccttcttctactcaaactgcatccccactgtggagt11/30/0711/30/07130Genomicunknown
ss90104098BCMHGSC_JDW|JWB-0834827rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa02/26/0802/29/08129Genomicunknown
ss102644582KRIBB_YJKIM|KHS1101843fwd/TA/Gttgaccccgtgcagccttggccagccttcttctactcaaactgcatccccactgtggagt05/21/0805/21/08130Genomicunknown
ss103224379BGI|BGI_rs916977rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa06/05/0806/18/09131Genomicunknown
ss1086966771000GENOMES|CEU.trio.12.15.2008_3134817_chr15_26186959rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa12/16/0812/16/08130Genomicunknown
ss134210702ENSEMBL|ENSSNP7128042rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa05/11/0905/15/09131Genomicunknown
ss136931700ENSEMBL|ENSSNP1080617rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa12/08/0810/15/09131Genomicunknown
ss160967517ILLUMINA|HumanOmni1-Quad_v1-0_B_rs916977-128_B_R_1513984384rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa08/04/0910/05/09131Genomicunknown
ss167717291COMPLETE_GENOMICS|NA07022_36_chr15_26186959rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa09/30/0909/30/09132Genomicunknown
ss170885044COMPLETE_GENOMICS|NA20431_36_chr15_26186959rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa10/01/0910/01/09132Genomicunknown
ss172753436AFFY|GenomeWideSNP_5_SNP_A-2145532rev/BC/Tatgcagtttgagtagaagaaggctggccaagg10/01/0910/02/09132Genomicunknown
ss174782821ILLUMINA|Human1M-Duov3_B_rs916977-128_B_R_1513984384rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa10/01/0910/05/09132Genomicunknown
ss207197517BCM-HGSC-SUB|BCM_CMT_1011-2699001rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa03/15/1003/18/10132Genomicunknown
ss2268137081000GENOMES|pilot_1_YRI_8623391_chr15_26186959rev/C/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa04/22/1004/22/10132Genomicunknown
ss2367228791000GENOMES|pilot_1_CEU_6327508_chr15_26186959rev/C/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa05/01/1005/01/10132Genomicunknown
ss2431208011000GENOMES|pilot_1_CHB+JPT_5005878_chr15_26186959rev/C/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa05/01/1005/01/10132Genomicunknown
ss254862597BL|SNP11948_15_26186959rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa08/19/1008/19/10134Genomicunknown
ss282193275GMI|GMI_AK_SNP_6513670rev/C/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa12/16/1012/16/10137Genomicunknown
ss286924800GMI|GMI_NA10851_SNP_2937591rev/C/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa12/17/1012/17/10138Genomicunknown
ss291808413PJP|SNP_1314771_chr15_26186959rev/C/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa01/21/1101/21/11134Genomicunknown
ss410956161ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs916977rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa06/07/1106/08/11135Genomicunknown
ss481841317ILLUMINA|HumanOmni2.5-4v1_B_rs916977-128_B_R_1615266275rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg01/30/1210/28/16137Genomicunknown
ss481873981ILLUMINA|HumanOmniExpress-12v1_C_rs916977-131_B_R_1863905712rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg01/30/1210/27/16137Genomicunknown
ss482831298ILLUMINA|HumanOmni1-Quad_v1-0_C_rs916977-131_B_R_1863905712rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg01/30/1208/28/15146Genomicunknown
ss485715112ILLUMINA|HumanOmni2.5-4v1_D_rs916977-131_B_R_1863905712rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg01/30/1210/27/16137Genomicunknown
ss491491443EXOME_CHIP|.GWAS._207669_chr_15_28513364rev/BC/Tactccacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggggtcaa03/05/1203/05/12137Genomicunknown
ss537576225ILLUMINA|HumanOmni5-4v1_B_rs916977-131_B_R_1866877235rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg06/22/1208/29/15146Genomicunknown
ss564384300TISHKOFF|snp_chr15_28513364rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg11/22/1211/23/12138Genomicunknown
ss660096420SSMP|15_28513364rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg12/14/1202/13/15138Genomicunknown
ss778632837ILLUMINA|HumanOmni25Exome-8v1_A_rs916977-131_B_R_1866877235rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/30/1307/10/15146Genomicunknown
ss780687198ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs916977-131_B_R_1990485792rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/30/1307/10/15146Genomicunknown
ss783303201ILLUMINA|HumanOmni2.5-4v1_H_rs916977-131_B_R_1863905712rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/30/1307/29/15146Genomicunknown
ss783360745ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs916977-131_B_R_1990485792rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/31/1306/18/15146Genomicunknown
ss784255408ILLUMINA|HumanOmniExpressExome-8v1_A_rs916977-131_B_R_1967919834rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/31/1306/18/15146Genomicunknown
ss832564572ILLUMINA|HumanOmniExpress-12v1_H_rs916977-131_B_R_1863905712rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg09/17/1306/18/15146Genomicunknown
ss834090475ILLUMINA|HumanOmni2.5-8v1_A_rs916977-131_B_R_1866877235rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg09/18/1307/29/15146Genomicunknown
ss991625369EVA-GONL|EVA-GONL_rs916977rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg04/23/1404/30/14142Genomicunknown
ss1080004190JMKIDD_LAB|HGDP_WGS_chr15_28513364rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg07/10/1407/12/14142Genomicunknown
ss13528272021000GENOMES|PHASE3_V1_66131740rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg08/16/1408/16/14142Genomicunknown
ss1397692517HAMMER_LAB|HAMMER_LAB_rs916977rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg09/30/1407/15/15146Genomicunknown
ss1427576144DDI|DDI_rs916977rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg11/04/1411/04/14144Genomicunknown
ss1577523243EVA_GENOME_DK|EVA_GENOME_DK_snv_rs916977rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg02/19/1502/19/15144Genomicunknown
ss1632673333EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_15_28513364_36577650rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg03/04/1503/04/15144Genomicunknown
ss1675667366EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_15_28513364_36577650rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg03/04/1503/04/15144Genomicunknown
ss1695637154EVA_DECODE|EVA_DECODE_15_26186959_51727_rs916977rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg03/02/1503/04/15144Genomicunknown
ss1713477715EVA_SVP|EVA_SVP_1172082rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg03/12/1503/12/15144Genomicunknown
ss1752154525ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs916977-131_B_R_1990485792rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/27/1506/09/15146Genomicunknown
ss1752154526ILLUMINA|OmniExpressExome-8v1-1_B_rs916977-131_B_R_1967919834rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/27/1506/09/15146Genomicunknown
ss1917893751ILLUMINA|HumanExome-12v1-1_B_exm-rs916977-131_B_R_1990485792rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg10/16/1510/16/15147Genomicunknown
ss1935022909WEILL_CORNELL_DGM|SNV:chr15:28513364rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg10/16/1510/17/15147Genomicunknown
ss1946388556ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs916977-131_B_R_1990485792rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg10/29/1510/29/15147Genomicunknown
ss1959597649ILLUMINA|exm-rs916977-131_B_R_1990485792rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg11/13/1511/13/15147Genomicunknown
ss1968070894GENOMED|rs916977rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg02/16/1602/16/16147Genomicunknown
ss2028291433JJLAB|SNP8793988rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg08/29/1608/31/16149Genomicunknown
ss2094797605ILLUMINA|Immuno_BeadChip_11419691_B_rs916977-131_B_R_1866877235rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg09/27/1609/27/16150Genomicunknown
ss2095057523ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs916977-131_B_R_1866877235rev/BC/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg09/27/1609/27/16150Genomicunknown
ss2156688498USC_VALOUEV|NC_000015.9:g.28513364T>Crev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg11/17/1611/17/16150Genomicunknown
ss2205534972HUMAN_LONGEVITY|HLI-15-28268218-T-Crev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg11/18/1611/18/16150Genomicunknown
ss2370076727TOPMED|15_28513364_T/Crev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg11/19/1611/19/16150Genomicunknown
ss2628638981SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5617439rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg01/06/1701/06/17151Genomicunknown
ss2633208817ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs916977-131_B_R_196791983rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg02/02/1702/02/17151Genomicunknown
ss2701147731GRF|rs916977rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg02/13/1702/13/17151Genomicunknown
ss2933004365GNOMAD|rs916977rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/23/1705/23/17151Genomicunknown
ss2985035149AFFY|Axiom_PsorMich_Affx-11383719rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/24/1705/24/17151Genomicunknown
ss2985667543AFFY|Axiom_Smokesc1_Affx-11383719rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/24/1705/24/17151Genomicunknown
ss3013008112SWEGEN|NC_000015.9:g.28513364T>Crev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg05/30/1705/30/17151Genomicunknown
ss3021616418ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs916977-131_B_R_1990485792rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg06/28/1706/28/17151Genomicunknown
ss3027969927BIOINF_KMB_FNS_UNIBA|15.28268218T>Crev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg07/05/1707/05/17151Genomicunknown
ss3223272918TOPMED|TOPMed_freeze_5?chr15:28,268,218-01rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg10/01/1710/01/17151Genomicunknown
ss3223272919TOPMED|TOPMed_freeze_5?chr15:28,268,218-02rev/G/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg10/01/1710/01/17151Genomicunknown
ss3351042300CSHL|rs916977rev/C/Tacagtggggatgcagtttgagtagaagaaggctggccaaggctgcacggg10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs916977|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/C/G'|mol=Genomic|build=151
 TTACAGCAGG CTTTGCTTGG GGATACATGA TAACGGAGAG CTGAGCTGGT TTCATTTTCC
 TTGGACTGAT GACTACTTTT CTTCGTATTT TTCCTTCTTT AGGCCCCACA GCTGGTCCAA
 GGCCTTGCCT CCAGAAACAT TGTAAAAATT GCTGCCCATT CTGATGGTCA CCACTACCTA
 GCCTTGGCTG CTACTGGAGA GGTGTACTCC TGGGGCTGTG GGGACGGCGG ACGGCTGGGC
 CATGGGGACA CTGTGTATGT ATCGCTTATT CCTGTAGGGG ACACACTCTC CTTTTATGTT
 GCCATATCCT AAACAGGATG GAGCGCAGAA GTGTGTCCAG GTGTTTTCCA ATTGCCCTGA
 CATGTAGCGC TGGGATGGAG CAGGACACTA CGATATGCCT CCTCCTTGGT GATGGCTTAG
 GAGCTCTGCC CATGTGTGGA GGGCAACGGG AATTGGCCTT TCTGTTCTTC TTGACCCCGT
 GCAGCCTTGG CCAGCCTTCT
 V
 TCTACTCAAA CTGCATCCCC ACTGTGGAGT TTGCCAAAAC AAATCCCACA CCACTGTTCC
 TTCATTCACA AACAGTTCAC CCTGTCTCTC ATAGATAAGG TTGTCACCCT TTTCTTGAAC
 CATATATTAT TTTTACAGGA ACAAAAGTCA GCAGTTTCTT CCTAATATTA TCCTACTCAG
 TGGAACCTTT TATTGTGAAA GAACAAATGA AACAGAAAGT TGTTATAAAT GCCAGGTTGT
 AAAAATTGGG AGGTCTGCCA GCCCCATGGA GTGATGGGAA CCCTCTTGTA CTTTGCTGTT
 GTGCATGGAA CTTTGGCATT AGGTTTAAAT GAGGGATGTA TGTACACACC AACCCAGCAA
 GCCCATTTCT TGTGGGCTGG AGCCCTGAGC AGGGAGAGGG CAGTGCAGAG CTTGAAATGA
 GTGAAGTCAT GACTGCACTT GTGTCCCTTG AGAGGAGCCT GGGGGGCATG GCCCATGCAC
 ACCACAGGGT GGAGTTGAGG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000015.8
dbSNP Blast Analysis
OMIM
266600
605837.0002

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs916977 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA
A/A
A/G
G
G/G
HWPA
G
ss134210702ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1352559TSC_42_AA 84AF 0.799999950.19999999
TSC_42_C 82AF 0.230000000.76999998
TSC_42_A 82AF 0.819999990.18000001
CEPH 184AF 0.209999990.79000002
HapMap-CEUEuropean 226IG 0.008849560.26548672 0.725663720.342782000.141592920.85840708
HapMap-HCBAsian 86IG 0.581395330.39534885 0.023255810.342782000.779069780.22093023
HapMap-JPTAsian 172IG 0.674418630.25581396 0.069767450.099721000.802325610.19767442
HapMap-YRISub-Saharan African 226IG 0.902654890.09734514 1.000000000.951327440.04867257
CHMJAsian 74IG0.72972971 0.27027026 0.729729710.27027026
HAPMAP-ASW 98IG 0.612244900.34693879 0.040816331.000000000.785714270.21428572
HAPMAP-CHBAsian 82IG 0.512195110.46341464 0.024390240.200325000.743902440.25609756
HAPMAP-CHD 170IG 0.517647090.41176471 0.070588241.000000000.723529400.27647060
HAPMAP-GIH 176IG 0.397727280.44318181 0.159090910.583882000.619318190.38068181
HAPMAP-LWK 180IG 0.899999980.10000000 1.000000000.949999990.05000000
HAPMAP-MEX 100IG 0.180000010.38000000 0.440000000.200325000.370000000.63000000
HAPMAP-MKK 286IG 0.776223780.21678321 0.006993010.479500000.884615360.11538462
HAPMAP-TSI 176IG 0.181818190.45454547 0.363636370.583882000.409090910.59090906
ss1352827202EAS 1008AF 0.728199960.27179998
EUR 1006AF 0.233600010.76640004
AFR 1322AF 0.899400060.10060000
AMR 694AF 0.422199990.57779998
SAS 978AF 0.624700010.37529999
ss136931700ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss167717291CEUEuropean 2IG 1.00000000 1.00000000
ss170885044PGP 2IG 1.00000000 1.00000000
ss226813708pilot_1_YRI_low_coverage_panel 118AF 0.957627120.04237288
ss23388292AFD_EUR_PANELEuropean 48IG 0.25000000 0.750000000.751830000.125000000.87500000
AFD_AFR_PANELAfrican American 46IG 0.608695630.34782609 0.043478261.000000000.782608690.21739130
AFD_CHN_PANELAsian 48IG 0.666666690.29166666 0.041666671.000000000.812500000.18750000
ss236722879pilot_1_CEU_low_coverage_panel 120AF 0.150000010.85000002
ss243120801pilot_1_CHB+JPT_low_coverage_panel 120AF 0.850000020.15000001
ss66422663HapMap-CEUEuropean 118IG 0.27118644 0.728813590.583882000.135593220.86440676
HapMap-HCBAsian 90IG 0.600000020.37777779 0.022222220.371093000.788888870.21111111
HapMap-JPTAsian 90IG 0.733333350.24444444 0.022222221.000000000.855555530.14444445
HapMap-YRISub-Saharan African 120IG 0.899999980.10000000 1.000000000.949999990.05000000
ss69171498HapMap-CEUEuropean 120IG 0.26666668 0.733333350.583882000.133333340.86666667
HapMap-HCBAsian 90IG 0.600000020.37777779 0.022222220.371093000.788888870.21111111
HapMap-JPTAsian 90IG 0.733333350.24444444 0.022222221.000000000.855555530.14444445
HapMap-YRISub-Saharan African 120IG 0.899999980.10000000 1.000000000.949999990.05000000
ss76189315ICMHP 8IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.475+/-0.1090000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  NCBI
UNKNOWNUNKNOWNUNKNOWN

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