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Reference SNP (refSNP) Cluster Report: rs864745                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.3027/1516 (1000 Genomes)
C=0.3996/50181 (TOPMED)
HGVS Names
  • CM000669.2:g.28140937T>C
  • NC_000007.13:g.28180556T>C
  • NC_000007.14:g.28140937T>C
  • NG_011499.1:g.44882A>G
  • NM_175061.3:c.115+39526A>G
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss279237790 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs864745 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1281483KWOK|OVLP-000804-172915rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca09/02/0010/10/0386Genomic89 %
ss1857439KWOK|OVLP-000925-133747byFreqrev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca10/06/0005/17/0487Genomic89 %
ss2543574SC_JCM|AC055735.14_62691fwd/TA/Gtgaacatttcctacaaccattcaaaacatttaacagttcaaattatatttgagcatcact11/03/0010/10/0389Genomicunknown
ss10374425BCM_SSAHASNP|chr7.NT_007819.13_27474164rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca06/29/0310/10/03116Genomicunknown
ss14320564WI_SSAHASNP|chr7.NT_007819.14_27474164rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca11/05/0311/22/03120Genomicunknown
ss14586413WUGSC_SSAHASNP|chr7.NT_007819.14_27474164rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca11/05/0311/22/03120Genomicunknown
ss22620642SSAHASNP|WGSA-200403-chr7.chr7.NT_007819.14_27474164rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca03/21/0403/21/04121Genomicunknown
ss22931015SSAHASNP|AACC-200403.chr7.NT_007819.14_27474164rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca03/22/0403/22/04121Genomicunknown
ss66521211AFFY|SNP_A-4225418byFreqrev/BC/Tataatttgaactgttaaatgttttgaatggtt10/29/0608/14/07127Genomicunknown
ss69010542PERLEGEN|PGP00490870byFreqrev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca01/30/0708/14/07127Genomicunknown
ss76343796AFFY|AFFY_6_1M_SNP_A-4225418byFreqrev/BC/Tataatttgaactgttaaatgttttgaatggtt08/28/0703/07/10130Genomicunknown
ss80613871HGSV|Cor18507_SNV_20070510.chr7_27953796rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca11/23/0711/26/07130Genomicunknown
ss81441517KRIBB_YJKIM|KHS67702fwd/TA/Gtgaacatttcctacaaccattcaaaacatttaacagttcaaattatatttgagcatcact11/30/0711/30/07130Genomicunknown
ss85885860HGSV|Cor19129_SNV_20070510.chr7_27953796rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca12/06/0712/10/07130Genomicunknown
ss93649996BCMHGSC_JDW|JWB-2287959byFreqrev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca02/26/0809/05/14129Genomicunknown
ss98141412HUMANGENOME_JCVI|1103652530394rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca03/31/0803/31/08130Genomicunknown
ss1135067871000GENOMES|NA19240_2008_12_16_1555014_chr7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca12/18/0812/18/08130Genomicunknown
ss115999060ILLUMINA-UK|NA18507_000044773_NCBI36.1_chr7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca01/16/0901/16/09130Genomic99 %
ss142784697ENSEMBL|ENSSNP13228593rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca06/05/0906/05/09131Genomicunknown
ss144278777ENSEMBL|ENSSNP4542359rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca12/08/0810/20/09131Genomicunknown
ss162161596COMPLETE_GENOMICS|NA07022_36_chr7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca09/28/0909/28/09132Genomicunknown
ss163887581COMPLETE_GENOMICS|NA19240_36_chr7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca09/29/0909/29/09132Genomicunknown
ss166329376COMPLETE_GENOMICS|NA20431_36_chr7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca09/30/0909/30/09132Genomicunknown
ss173328734AFFY|GenomeWideSNP_5_SNP_A-4225418rev/BC/Tataatttgaactgttaaatgttttgaatggtt10/01/0910/03/09132Genomicunknown
ss181341936PAGE_STUDY|PAGE_WHI_rs864745fwd/TA/Gtgaacatttcctacaaccattcaaaacatttaacagttcaaattatatttgagcatcact12/04/0912/04/09132Genomicunknown
ss181834389PAGE_STUDY|PAGE_CALiCo_rs864745fwd/TA/Gtgaacatttcctacaaccattcaaaacatttaacagttcaaattatatttgagcatcact12/14/0912/23/10132Genomicunknown
ss181835982PAGE_STUDY|PAGE_EAGLE_rs864745fwd/TA/Gtgaacatttcctacaaccattcaaaacatttaacagttcaaattatatttgagcatcact12/14/0912/23/10132Genomicunknown
ss182258818PAGE_STUDY|PAGE_MEC-HI_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat12/16/0912/23/10132Genomicunknown
ss182258848PAGE_STUDY|PAGE_MEC-LA_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat12/16/0912/23/10132Genomicunknown
ss208076343BCM-HGSC-SUB|BCM_CMT_1011-1491120rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca03/15/1003/19/10132Genomicunknown
ss2229811721000GENOMES|pilot_1_YRI_4790855_chr7_28147081rev/C/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca04/22/1004/22/10132Genomicunknown
ss230388846WTCCC|NT_007819.16_27669514_3Trev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca04/30/1004/30/10132Genomicunknown
ss2339038021000GENOMES|pilot_1_CEU_3508431_chr7_28147081rev/C/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca05/01/1005/01/10132Genomicunknown
ss2408732791000GENOMES|pilot_1_CHB+JPT_2758356_chr7_28147081rev/C/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca05/01/1005/01/10132Genomicunknown
ss244313321ILLUMINA|CVDSNP55v1_A_rs864745rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca06/10/1006/10/10132Genomicunknown
ss254144896BL|SNP35107_7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca08/19/1008/19/10134Genomicunknown
ss279237790GMI|GMI_AK_SNP_3558035rev/C/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca12/16/1012/16/10137Genomicunknown
ss294036554PJP|SNP_3542912_chr7_28147081rev/C/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca01/21/1101/21/11134Genomicunknown
ss410874625ILLUMINA|Cardio-Metabo_Chip_11395247_A_chr7_28147081rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca06/07/1106/07/11135Genomicunknown
ss491397758EXOME_CHIP|.GWAS._113984_chr_7_28180556rev/BC/Tagtgatgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaatgttca03/05/1203/05/12137Genomicunknown
ss537566813ILLUMINA|HumanOmni5-4v1_B_rs864745-131_B_R_1885011735rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat06/22/1208/29/15146Genomicunknown
ss559890341TISHKOFF|snp_chr7_28180556rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat11/22/1211/23/12138Genomicunknown
ss654244509SSMP|7_28180556rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat12/14/1202/11/15138Genomicunknown
ss778714290ILLUMINA|HumanOmni25Exome-8v1_A_rs864745-131_B_R_1885011735rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/30/1307/09/15142Genomicunknown
ss780687108ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs864745-131_B_R_1990485689rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/30/1307/09/15142Genomicunknown
ss783360651ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs864745-131_B_R_1990485689rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/31/1306/19/15142Genomicunknown
ss834173508ILLUMINA|HumanOmni2.5-8v1_A_rs864745-131_B_R_1885011735rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat09/18/1307/28/15142Genomicunknown
ss984089100EVA-GONL|EVA-GONL_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat04/23/1404/24/14142Genomicunknown
ss1074469245JMKIDD_LAB|HGDP_WGS_chr7_28180556rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat07/10/1407/11/14142Genomicunknown
ss13244360861000GENOMES|PHASE3_V1_36573876rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat08/16/1408/16/14142Genomicunknown
ss1397489047HAMMER_LAB|HAMMER_LAB_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat09/30/1409/30/14146Genomicunknown
ss1431067756DDI|DDI_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat11/04/1411/05/14144Genomicunknown
ss1582126187EVA_GENOME_DK|EVA_GENOME_DK_snv_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat02/19/1502/20/15144Genomicunknown
ss1593659216EVA_DECODE|EVA_DECODE_7_28147081_267397_rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat03/02/1503/03/15144Genomicunknown
ss1617843768EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_7_28180556_20284490rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat03/04/1503/04/15144Genomicunknown
ss1660837801EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_7_28180556_20284490rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat03/04/1503/04/15144Genomicunknown
ss1712941916EVA_SVP|EVA_SVP_636283rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat03/12/1503/12/15144Genomicunknown
ss1752680804ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs864745-131_B_R_1990485689rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/27/1506/09/15146Genomicunknown
ss1917815768ILLUMINA|HumanExome-12v1-1_B_exm-rs864745-131_B_R_1990485689rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat10/16/1510/16/15147Genomicunknown
ss1927332291WEILL_CORNELL_DGM|SNV:chr7:28180556rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat10/16/1510/17/15147Genomicunknown
ss1946205003ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs864745-131_B_R_1990485689rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat10/29/1510/29/15147Genomicunknown
ss1958998477ILLUMINA|exm-rs864745-131_B_R_1990485689rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat11/13/1511/13/15147Genomicunknown
ss1970657079GENOMED|rs864745rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat02/16/1602/16/16147Genomicunknown
ss2024344868JJLAB|SNP4847423rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat08/29/1608/30/16149Genomicunknown
ss2094973606ILLUMINA|Immuno_BeadChip_11419691_B_imm_7_28147081-1_T_R_1670201741rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat09/27/1609/27/16150Genomicunknown
ss2095197069ILLUMINA|InfiniumImmunoArray-24v2-0_A_imm_7_28147081-1_T_R_2310717606rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat09/27/1609/27/16150Genomicunknown
ss2095197070ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs864745-138_B_R_2264365466rev/BC/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat09/27/1609/27/16150Genomicunknown
ss2152540544USC_VALOUEV|NC_000007.13:g.28180556T>Crev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat11/17/1611/17/16150Genomicunknown
ss2292715940HUMAN_LONGEVITY|HLI-7-28140937-T-Crev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat11/18/1611/18/16150Genomicunknown
ss2461580773TOPMED|7_28180556_T/Crev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat11/20/1611/20/16150Genomicunknown
ss2626660805SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV3093087rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat01/06/1701/06/17151Genomicunknown
ss2634584503ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs864745-131_B_R_210359380rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat02/02/1702/02/17151Genomicunknown
ss2708198061GRF|rs864745rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat02/13/1702/13/17151Genomicunknown
ss2851186560GNOMAD|rs864745rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/19/1705/19/17151Genomicunknown
ss2985402796AFFY|Axiom_PsorMich_Affx-30273818rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/24/1705/24/17151Genomicunknown
ss2986034392AFFY|Axiom_Smokesc1_Affx-30273818rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/24/1705/24/17151Genomicunknown
ss3000831418SWEGEN|NC_000007.13:g.28180556T>Crev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat05/30/1705/30/17151Genomicunknown
ss3022720301ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs864745-131_B_R_1990485689rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat06/28/1706/28/17151Genomicunknown
ss3025966727BIOINF_KMB_FNS_UNIBA|7.28140937T>Crev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat07/05/1707/05/17151Genomicunknown
ss3347499052CSHL|rs864745rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat10/02/1710/02/17151Genomicunknown
ss3525767476TOPMED|TOPMed_freeze_5?chr7:28,140,937rev/C/Ttgctcaaatataatttgaactgttaaatgttttgaatggttgtaggaaat10/06/1710/06/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs864745|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TGGCCTGGCT TGAGTAGCAC TGGCCTCTTA CCAACACCTT ACAGGAATTT TCTGGCATTC
 CATGACTGTG TACCTAAAGA ACTTAGGGCA AGTTCTCAGA ATCCACCTCT ATAGCTTAAA
 AAGCCAAGTC TTTGAAAAAT CCTTTCCTTA AACCTTCTGT TCTGGTTGTC AGGCTTTCCA
 TGTAGGAGGT GCTTGTTCAT TTTGTTTGTT AACTTCAACC TTCTAGAAGT CACATGTTCT
 CTGAGTTGTG TCTGTCTCGA TTTTCTATTT CACATTTGGC TTGGGATTTC ACTGTAACAG
 GATACAGGGC TGTGGCTGCA TCTTTTGAGT CTGTGAAATT TTGTTCTACT CCAAATTAAA
 AGCTGGGATA GCATAACATA ACCAAGAGCT TACTAAACTA TATGCTGTGA ATGAGTTTCA
 CATTGCCACC AGATATTCAC AGCTGTAAAG TTCTTTCTGC GTTAAAACAT TGAACATTTC
 CTACAACCAT TCAAAACATT
 R
 TAACAGTTCA AATTATATTT GAGCATCACT TATATGGCTC TTACGGAACT TATGTAAAGT
 TCTTGAAGTC AGTGATTTTA AGAAATTGTG CTTGGAATAT TTATAAAAAT TCTTGCTAAG
 ATCTTTCCTA GTATTTTATT TCTCTTACCA TAACAATGTG ATATAAAGAA TAAAAATAGA
 TTCTTCTCAC CGGTTGCTGC ATAAATGTTG TGAGGTTATC TCTACTTTAA TTCAATGTGT
 TGTACACATA TTATTATTGA CTCTATGTGC TATGATGTGA AAATGTTGGG AAGCACCAAC
 AGAATCCACG GGGGACCGGA CAGTAAAATC TCCTGTAGAA TTTTTTAAGG GCATACATGT
 TCTCTCCCCA CCCCGGATCT ACTGAGTCAG AATCTCGGTG GGGTTTGGGG TGAGGGGTGG
 CAGGTGTTAT GTTTCCTAGA CTGCAGTAAA AATACTGTAG TGAGTATTTC TGTCTGTTAG
 CCTTCCTCAT ATTTTGACAC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007819.16 ABBA01056779 AC004885 AC055735.14
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs864745 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss115999060YRI 2IG 1.00000000 1.00000000
ss1324436086EAS 1008AF 0.772800030.22719999
EUR 1006AF 0.480099980.51990002
AFR 1322AF 0.788999970.21100000
AMR 694AF 0.635400000.36460000
SAS 978AF 0.762799980.23719999
ss142784697ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss144278777ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss162161596CEUEuropean 2IG 1.00000000 1.00000000
ss163887581YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss166329376PGP 2IG 1.00000000 0.500000000.50000000
ss222981172pilot_1_YRI_low_coverage_panel 118AF 0.771186410.22881356
ss233903802pilot_1_CEU_low_coverage_panel 120AF 0.500000000.50000000
ss240873279pilot_1_CHB+JPT_low_coverage_panel 120AF 0.758333330.24166666
ss66521211HapMap-CEUEuropean 118IG0.305084740.406779650.288135590.200325000.508474590.49152541
HapMap-HCBAsian 90IG0.666666690.288888900.044444450.751830000.811111090.18888889
HapMap-JPTAsian 90IG0.622222240.333333340.044444451.000000000.788888870.21111111
HapMap-YRISub-Saharan African 120IG0.550000010.400000010.050000000.654721000.750000000.25000000
ss69010542HapMap-CEUEuropean 120IG0.316666660.400000010.283333330.150222000.516666650.48333332
HapMap-HCBAsian 90IG0.666666690.288888900.044444450.751830000.811111090.18888889
HapMap-JPTAsian 90IG0.622222240.333333340.044444451.000000000.788888870.21111111
HapMap-YRISub-Saharan African 120IG0.566666660.383333330.050000000.751830000.758333330.24166666
ss76343796ICMHP 6IG 0.666666690.33333334 0.333333340.66666669
ss93649996HapMap-CEUEuropean 226IG0.265486720.442477880.292035400.250592000.486725660.51327431
HapMap-HCBAsian 86IG0.674418630.279069780.046511630.654721000.813953460.18604651
HapMap-JPTAsian 172IG0.604651150.372093020.023255810.250592000.790697690.20930232
HapMap-YRISub-Saharan African 224IG0.589285730.366071430.044642860.751830000.772321400.22767857
HAPMAP-ASW 96IG0.604166690.354166660.041666671.000000000.781250000.21875000
HAPMAP-CHBAsian 82IG0.487804890.439024390.073170730.751830000.707317050.29268292
HAPMAP-CHD 170IG0.611764730.341176480.047058821.000000000.782352920.21764706
HAPMAP-GIH 174IG0.609195410.333333340.057471260.751830000.775862100.22413793
HAPMAP-LWK 180IG0.666666690.266666680.066666670.150222000.800000010.20000000
HAPMAP-MEX 100IG0.360000010.519999980.120000000.479500000.620000000.38000000
HAPMAP-MKK 286IG0.552447560.377622370.069930071.000000000.741258740.25874126
HAPMAP-TSI 174IG0.298850570.390804590.310344820.050043000.494252860.50574714
ss98141412J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.422+/-0.1810000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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