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Reference SNP (refSNP) Cluster Report: rs84190027                 
RefSNP
Organism:zebra_finch (Taeniopygia guttata)
Molecule Type:Genomic
Created/Updated in build:131/148
Map to Genome Build:103/Weight 1
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:Not available
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss181339366 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs84190027 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss181339366ENSEMBL|temptgu999974fwd/BC/Taaaacgtttaaaattctggttttatgcagtctgaactaagttcattacctttttgacagc11/20/0912/01/09131Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs84190027|allelePos=401|totalLen=801|taxid=59729|snpclass=1|alleles='C/T'|mol=Genomic|build=131
 TTTCTAAATG TACCATCAGG AGAAAGCAGC TGAAGCTCAG CTCACACTCA CCAAGAGTCA
 TGAGCTGATC AATCCCACGG ATGATCCGTT CACAGGCCTC ATCACGGGAC TTCATCCCCC
 ATTCCCCCTC CTGGGGTTTG TACAGGAGCT TCTCCACCTC TTCCAGAGTC ACAGACACAC
 TTGCTCCTAA TTCTTCAGGC TGATCAACTA AAAAGAGCAA ATTGGGGAAG GAGTGGGAAC
 AAGATAAATT GTTGAGCACT CACAGTTATT AAATAACTGT ATGCTTGCGA CTGAAAACAT
 TCTTGCCATG AAGTAGCGTT TAATGCTAAG GCTGTGGGGA AAAAAATTAT ACAAAATGGA
 TACTAACAGC AAAACGTTTA AAATTCTGGT TTTATGCAGT
 Y
 CTGAACTAAG TTCATTACCT TTTTGACAGC TTATTCAGTA ACTATTTCCT CAGTTTCTTC
 CAAATGTTCC TCCCCCCTCC CAGCTGGTAC TGACAAGTAC TGGAAAAGTG AAATATTAAG
 ACAAACCACA AATTCCACTC TTTTATTTAC AGATAATCTG GATTTGATGA GCAAACTTTA
 TAAACTGTTG GGTTTAAATT ATGTGCAGCA AATATTTGCT GACCAGAAAT ATTTTATTTA
 TATTCTTCTT ACACCCCCTT GTATCATAGT ATACTAAAAC AAATTCATAG TTTGAAACTT
 GAGATGTTTT TTGAAACCTG CCATTTGGAA GTAGCAGGTT TTATTTCTTA AGTCAGAGCT
 ACACATTTAA AGTATATTTT TTTTTCAAAA TTGCTCTGGA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/T
HWPC
T
ss181339366ENSEMBL_Zebrafinch 2IG1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.500+/-01000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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