NCBI
dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Re-designed RefSNP Report page!
Clean, modern design that makes it easy to find the information that you are looking for. Report any problems by sending us an email.
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs8099917                 ** With drug-response allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:G/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:With drug-response allele [ClinVar]
MAF/MinorAlleleCount:G=0.1312/657 (1000 Genomes)
G=0.1525/19154 (TOPMED)
HGVS Names
  • CM000681.2:g.39252525T>G
  • NC_000019.10:g.39252525T>G
  • NC_000019.9:g.39743165T>G
  • NG_055295.1:g.1332A>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283208450 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs8099917 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss12449652WI_SSAHASNP|chr19.NT_011109.15_12011383fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag07/04/0310/25/06116Genomicunknown
ss44192664ABI|hCV11710096byFreqfwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag07/18/0511/03/06126Genomicunknown
ss66661174ILLUMINA|HumanHap300v1.1_rs8099917fwd/TG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag11/09/0611/09/06127Genomicunknown
ss67871944ILLUMINA|HumanHap550v1.1_rs8099917fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag11/14/0611/14/06127Genomicunknown
ss68016642ILLUMINA|HumanHap650Yv1.0_rs8099917fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag11/14/0611/15/06127Genomicunknown
ss70970599ILLUMINA|HumanHap550v3.0__rs8099917rev/TA/Cctgtatacagcatggttccaatttgggtgaattgctcacagaaaggaaaacaaaaggagg04/20/0703/31/08130Genomicunknown
ss71581269ILLUMINA|HumanHap650Yv3.0_rs8099917fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag04/23/0704/23/07127Genomicunknown
ss75518341ILLUMINA|ILMN_Human_1M_rs8099917fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag08/28/0708/29/07129Genomicunknown
ss76465447AFFY|AFFY_6_1M_SNP_A-8326390rev/TA/Cgttccaatttgggtgaattgctcacagaaagg08/28/0708/30/07129Genomicunknown
ss79281525ILLUMINA|HumanHap300v2.0_rs8099917fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag04/18/0711/18/07130Genomicunknown
ss84786739KRIBB_YJKIM|KHS809684fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag12/04/0712/08/07130Genomicunknown
ss96306179HUMANGENOME_JCVI|1103691143524fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag03/26/0803/26/08130Genomicunknown
ss1113725581000GENOMES|CEU.trio.12.15.2008_3617493_chr19_44435005fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag12/17/0812/17/08130Genomicunknown
ss122903099ILLUMINA|HumanCNV370v1_C_rs8099917fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag04/14/0904/15/09131Genomicunknown
ss136265838ENSEMBL|ENSSNP1529029fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag12/08/0810/15/09131Genomicunknown
ss154469241ILLUMINA|Human610_Quadv1_B_rs8099917-128_T_R_1501874336rev/TA/Cctgtatacagcatggttccaatttgggtgaattgctcacagaaaggaaaacaaaaggagg06/18/0906/20/09131Genomicunknown
ss159643761ILLUMINA|Human660W-Quad_v1_A_rs8099917-128_T_R_1501874336rev/TA/Cctgtatacagcatggttccaatttgggtgaattgctcacagaaaggaaaacaaaaggagg07/06/0907/07/09131Genomicunknown
ss160949984ILLUMINA|HumanOmni1-Quad_v1-0_B_rs8099917-128_T_R_1501874336rev/TA/Cctgtatacagcatggttccaatttgggtgaattgctcacagaaaggaaaacaaaaggagg08/04/0910/05/09131Genomicunknown
ss172398663ILLUMINA|HumanCNV370-Quadv3_C_rs8099917-128_T_R_1501874336rev/TA/Cctgtatacagcatggttccaatttgggtgaattgctcacagaaaggaaaacaaaaggagg10/01/0910/04/09132Genomicunknown
ss174719076ILLUMINA|Human1M-Duov3_B_rs8099917-128_T_R_1501874336rev/TA/Cctgtatacagcatggttccaatttgggtgaattgctcacagaaaggaaaacaaaaggagg10/01/0910/05/09132Genomicunknown
ss208411054BCM-HGSC-SUB|BCM_CMT_1011-3094589fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag03/15/1003/19/10132Genomicunknown
ss2281382821000GENOMES|pilot_1_YRI_9947965_chr19_44435005fwd/G/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag04/22/1004/22/10132Genomicunknown
ss2376761361000GENOMES|pilot_1_CEU_7280765_chr19_44435005fwd/G/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag05/01/1005/01/10132Genomicunknown
ss2438826131000GENOMES|pilot_1_CHB+JPT_5767690_chr19_44435005fwd/G/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag05/01/1005/01/10132Genomicunknown
ss283208450GMI|GMI_AK_SNP_7528871fwd/G/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag12/16/1012/16/10137Genomicunknown
ss292249558PJP|SNP_1755916_chr19_44435005fwd/G/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag01/21/1101/21/11134Genomicunknown
ss481784914ILLUMINA|HumanOmni2.5-4v1_B_rs8099917-128_T_R_1735642206fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta01/30/1210/28/16137Genomicunknown
ss481817209ILLUMINA|HumanOmniExpress-12v1_C_rs8099917-131_T_R_1854757392fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta01/30/1210/27/16137Genomicunknown
ss482778596ILLUMINA|HumanOmni1-Quad_v1-0_C_rs8099917-131_T_R_1865672880fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta01/30/1208/28/15146Genomicunknown
ss485687146ILLUMINA|HumanOmni2.5-4v1_D_rs8099917-131_T_R_1854757392fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta01/30/1210/28/16137Genomicunknown
ss491546753EXOME_CHIP|.GWAS._262979_chr_19_39743165fwd/BG/Tcctccttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgtatacag03/05/1203/06/12137Genomicunknown
ss537555932ILLUMINA|HumanOmni5-4v1_B_rs8099917-131_T_R_1893182988fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta06/22/1208/29/15146Genomicunknown
ss565980841TISHKOFF|snp_chr19_39743165fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/22/1211/23/12138Genomicunknown
ss661845373SSMP|19_39743165fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta12/14/1202/14/15138Genomicunknown
ss779050861ILLUMINA|HumanOmni25Exome-8v1_A_rs8099917-131_T_R_1865672880fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/30/1307/10/15146Genomicunknown
ss780687039ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs8099917-131_T_R_1990494462fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/30/1307/10/15146Genomicunknown
ss783289159ILLUMINA|HumanOmni2.5-4v1_H_rs8099917-131_T_R_1854757392fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/30/1307/29/15146Genomicunknown
ss783360582ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs8099917-131_T_R_1990494462fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/31/1306/19/15146Genomicunknown
ss784241887ILLUMINA|HumanOmniExpressExome-8v1_A_rs8099917-131_T_R_1893182988fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/31/1306/19/15146Genomicunknown
ss825612043ILLUMINA|HumanCNV370v1_C_rs8099917-126_T_R_IFB1135557426:0fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta06/24/1311/21/14144Genomicunknown
ss832550385ILLUMINA|HumanOmniExpress-12v1_H_rs8099917-131_T_R_1854757392fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta09/17/1306/18/15146Genomicunknown
ss834513823ILLUMINA|HumanOmni2.5-8v1_A_rs8099917-131_T_R_1865672880fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta09/18/1307/29/15146Genomicunknown
ss994296060EVA-GONL|EVA-GONL_rs8099917fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta04/23/1405/01/14142Genomicunknown
ss1081901695JMKIDD_LAB|HGDP_WGS_chr19_39743165fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta07/10/1407/12/14142Genomicunknown
ss13631505341000GENOMES|PHASE3_V1_76873457fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta08/16/1408/16/14142Genomicunknown
ss1428402837DDI|DDI_rs8099917fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/04/1411/04/14144Genomicunknown
ss1578638595EVA_GENOME_DK|EVA_GENOME_DK_snv_rs8099917fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta02/19/1502/20/15144Genomicunknown
ss1637962007EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_19_39743165_42403218fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta03/04/1503/04/15144Genomicunknown
ss1680956040EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_19_39743165_42403218fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta03/04/1503/04/15144Genomicunknown
ss1698349591EVA_DECODE|EVA_DECODE_19_44435005_290396_rs8099917fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta03/02/1503/05/15144Genomicunknown
ss1713662431EVA_SVP|EVA_SVP_1356510fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta03/12/1503/12/15144Genomicunknown
ss1752284786ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs8099917-131_T_R_1990494462fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/27/1506/09/15146Genomicunknown
ss1752284787ILLUMINA|OmniExpressExome-8v1-1_B_rs8099917-131_T_R_1893182988fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/27/1506/09/15146Genomicunknown
ss1917937286ILLUMINA|HumanExome-12v1-1_B_exm-rs8099917-131_T_R_1990494462fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta10/16/1510/16/15147Genomicunknown
ss1937789906WEILL_CORNELL_DGM|SNV:chr19:39743165fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta10/16/1510/19/15147Genomicunknown
ss1946535273ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs8099917-131_T_R_1990494462fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta10/29/1510/29/15147Genomicunknown
ss1946535274ILLUMINA|HumanCoreExome-12v1-0_C_rs8099917-131_T_R_1893182988fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta10/29/1510/29/15147Genomicunknown
ss1959863222ILLUMINA|exm-rs8099917-131_T_R_1990494462fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/13/1511/13/15147Genomicunknown
ss1959863223ILLUMINA|rs8099917-131_T_R_1893182988fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/13/1511/13/15147Genomicunknown
ss1966653269AMU|chr19_39743165fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta01/29/1601/29/16147Genomicunknown
ss1968643486GENOMED|rs8099917fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta02/16/1602/16/16147Genomicunknown
ss2029674052JJLAB|SNP10176607fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta08/29/1608/31/16149Genomicunknown
ss2094804032ILLUMINA|Immuno_BeadChip_11419691_B_rs8099917-131_T_R_1865672880fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta09/27/1609/27/16150Genomicunknown
ss2095084990ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs8099917-131_T_R_1865672880fwd/BG/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta09/27/1609/27/16150Genomicunknown
ss2158214129USC_VALOUEV|NC_000019.9:g.39743165T>Gfwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/17/1611/17/16150Genomicunknown
ss2225739600HUMAN_LONGEVITY|HLI-19-39252525-T-Gfwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/18/1611/18/16150Genomicunknown
ss2391451231TOPMED|19_39743165_T/Gfwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta11/19/1611/19/16150Genomicunknown
ss2633539540ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs8099917-131_T_R_18931829fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta02/02/1702/02/17151Genomicunknown
ss2702824685GRF|rs8099917fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta02/13/1702/13/17151Genomicunknown
ss2710882570ILLUMINA|Consortium-OncoArray_15047405_A_rs8099917-131_T_R_1893182988fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta03/22/1703/22/17151Genomicunknown
ss2962824520GNOMAD|rs8099917fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/23/1705/23/17151Genomicunknown
ss2985141452AFFY|Axiom_PsorMich_Affx-15940502fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/24/1705/24/17151Genomicunknown
ss2985771910AFFY|Axiom_Smokesc1_Affx-15940502fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/24/1705/24/17151Genomicunknown
ss3017465748SWEGEN|NC_000019.9:g.39743165T>Gfwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta05/30/1705/30/17151Genomicunknown
ss3021904983ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs8099917-131_T_R_1990494462fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta06/28/1706/28/17151Genomicunknown
ss3021904984ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs8099917-138_T_R_2264365342fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta06/28/1706/28/17151Genomicunknown
ss3028669080BIOINF_KMB_FNS_UNIBA|19.39252525T>Gfwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta07/05/1707/05/17151Genomicunknown
ss3293196343TOPMED|TOPMed_freeze_5?chr19:39,252,525fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta10/02/1710/02/17151Genomicunknown
ss3352301451CSHL|rs8099917fwd/G/Tttttgttttcctttctgtgagcaattcacccaaattggaaccatgctgta10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs8099917|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=151
 CTGTGTCTTG CTTTCTCTTT CTCTCTCTCT CTCTGTTCCT GTCTCTGTCT CTGGCGTGAC
 TCCATCTTTC TTATTCATTT TTCCAACAAG CATCCTGCCC CAGGTCGCTC TGTCTGTCTC
 AATCAATCTC TTTTTGTTTA AACATAAAAT CTACTTCTTT TTCTGATAAA ATTAGCCATG
 CATGTTCAGT GGATAAAGCT TGAAAAATAC ACAAAAACAT AAAAGAAAAA AAACATCACC
 TATAACTTCA CCATCCTCCT CTCATCCCTC ATCCCACTTC TGGAACAAAT CGTCCCAATA
 CATAGGAATT TTCCATGTGT TTATTTGTGC ATATGTTTTC TGACTACCAA AGTAACACTT
 GTTCCTTGTA AAAGATTCCA TCCATACAAA AACATACAAC ATGGAGAGTT AAAGTAAGTC
 TTGTATTTCA CCTCCTGGAG GTAAATATTT TTTAACAATT TGTCACTGTT CCTCCTTTTG
 TTTTCCTTTC TGTGAGCAAT
 K
 TCACCCAAAT TGGAACCATG CTGTATACAG TTTGGTAGCT GGCTTTTTAT GTCTTACCAT
 TATCTCTCAT TTGCATTCTC CCACATCTTT AATTATAGCG TATCAGTTAG GGCCCAGCAG
 GAAACAGATG GCCCGTCAAT TTAGGATAAT TTGAGGTGGG GTTGATACCA GAAGCCTTTA
 TAAAGCGATT GGATAGTAAA GGCAAATGAC AAGAGCTAGT GCAAGCTCCT GGGGCCAGCA
 TGGGTGAGGG GCCTCATCCA CAGGCCTAAA GGAAGGGGAG AGGGTTGAGG GTGTGCATGT
 GGTTGCCTGA CTTGGGGAGG AGAGAGTCAC TTAGATTTGT GGAGGAAACA GATGAATTGT
 GGTGGCCCAG CACAGGGAGG AGCCCTGGGG AAAAAACACC TGACCTCCTC TCCCCTCTAC
 CTGGGGCCCA GAGTAGGTTG GAGAAGCAGG GACAGTAGAT AAGGAGGGGC AAACGGAAGA
 CATCCCCCAC CCCCACACCA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011109 ABBA01040723
dbSNP Blast Analysis
OMIM
609532
607402

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceG/G
G/T
T/T
HWPG
T
ss136265838ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ss1363150534EAS 1008AF 0.076400000.92359996
EUR 1006AF 0.168000000.83200002
AFR 1322AF 0.042400000.95759994
AMR 694AF 0.276699990.72330004
SAS 978AF 0.166699990.83329999
ss228138282pilot_1_YRI_low_coverage_panel 118AF 0.016949150.98305082
ss237676136pilot_1_CEU_low_coverage_panel 120AF 0.166666670.83333331
ss243882613pilot_1_CHB+JPT_low_coverage_panel 120AF 0.066666670.93333334
ss44192664HapMap-CEUEuropean 226IG0.026548670.247787610.725663720.751830000.150442480.84955752
HapMap-HCBAsian 86IG 0.069767450.930232581.000000000.034883720.96511626
HapMap-JPTAsian 172IG 0.186046510.813953460.751830000.093023260.90697676
HapMap-YRISub-Saharan African 226IG 0.035398230.964601761.000000000.017699110.98230088
HAPMAP-ASW 98IG 0.204081640.795918350.751830000.102040820.89795917
HAPMAP-CHBAsian 82IG 0.195121940.804878061.000000000.097560970.90243900
HAPMAP-CHD 170IG0.011764710.117647060.870588240.342782000.070588240.92941177
HAPMAP-GIH 176IG0.022727270.318181810.659090940.527089000.181818190.81818181
HAPMAP-LWK 180IG 0.122222220.877777761.000000000.061111110.93888891
HAPMAP-MEX 100IG0.080000000.460000010.460000010.654721000.310000000.69000000
HAPMAP-MKK 284IG0.014084510.204225350.781690121.000000000.116197180.88380283
HAPMAP-TSI 176IG0.011363640.375000000.613636370.099721000.198863640.80113637
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss96306179J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.228+/-0.2490000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement