NCBI
dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Re-designed RefSNP Report page!
Clean, modern design that makes it easy to find the information that you are looking for. Report any problems by sending us an email.
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs767210                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (REV)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.0821/411 (1000 Genomes)
A=0.0847/10637 (TOPMED)
HGVS Names
  • CM000675.2:g.110817691G>A
  • NC_000013.10:g.111470038G>A
  • NC_000013.11:g.110817691G>A
  • XR_001750021.1:n.4393G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss16611230 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs767210 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss154829TSC-CSHL|TSC0073245fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa09/06/0010/10/0386Genomic95 %
ss16611230CSHL-HAPMAP|CSHL-HuAA-200402.chr13.NT_009952.14_24559714byFreqrev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt02/17/0410/30/04120Genomicunknown
ss24560875PERLEGEN|afd4488063byFreqrev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt08/10/0409/13/04123Genomicunknown
ss43540850ABI|hCV1985049rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt07/18/0507/18/05126Genomicunknown
ss66757052ILLUMINA|HumanHap300v1.1_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa11/09/0611/09/06127Genomicunknown
ss67815770ILLUMINA|HumanHap550v1.1_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa11/14/0611/14/06127Genomicunknown
ss67981859ILLUMINA|HumanHap650Yv1.0_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa11/14/0611/15/06127Genomicunknown
ss70942346ILLUMINA|HumanHap550v3.0__rs767210rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt04/20/0703/31/08130Genomicunknown
ss71546381ILLUMINA|HumanHap650Yv3.0_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa04/23/0704/23/07127Genomicunknown
ss75686249ILLUMINA|ILMN_Human_1M_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa08/28/0708/29/07129Genomicunknown
ss79265876ILLUMINA|HumanHap300v2.0_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa04/18/0711/18/07130Genomicunknown
ss83558038KRIBB_YJKIM|KHS489406fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa12/04/0712/05/07130Genomicunknown
ss97195120HUMANGENOME_JCVI|1103649336423rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt03/28/0803/28/08130Genomicunknown
ss122809665ILLUMINA|HumanCNV370v1_C_rs767210fwd/BC/Taccattttatacttaaaaatcaggcgacaggaatgctggcagaaatgtgaatgtagcaaa04/14/0904/15/09131Genomicunknown
ss137312033ENSEMBL|ENSSNP834836byFreqrev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt12/08/0803/07/10131Genomicunknown
ss154439293ILLUMINA|Human610_Quadv1_B_rs767210-127_T_R_1501858173rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt06/18/0906/20/09131Genomicunknown
ss159614254ILLUMINA|Human660W-Quad_v1_A_rs767210-128_T_R_1501858173rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt07/06/0907/07/09131Genomicunknown
ss168692541COMPLETE_GENOMICS|NA07022_36_chr13_110268039rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt09/30/0910/01/09132Genomicunknown
ss172329168ILLUMINA|HumanCNV370-Quadv3_C_rs767210-127_T_R_1501858173rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt10/01/0910/04/09132Genomicunknown
ss174486782ILLUMINA|Human1M-Duov3_B_rs767210-127_T_R_1501858173rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt10/01/0910/04/09132Genomicunknown
ss2364367581000GENOMES|pilot_1_CEU_6041387_chr13_110268039rev/A/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt05/01/1005/01/10132Genomicunknown
ss255326029BL|SNP110223_13_110268039rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt08/19/1008/20/10134Genomicunknown
ss291539188PJP|SNP_1045546_chr13_110268039rev/A/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt01/21/1101/21/11134Genomicunknown
ss491481125EXOME_CHIP|.GWAS._197351_chr_13_111470038rev/TA/Gtttgctacattcacatttctgccagcattcctgtcgcctgatttttaagtataaaatggt03/05/1203/05/12137Genomicunknown
ss537499396ILLUMINA|HumanOmni5-4v1_B_rs767210-131_T_R_1885473247rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa06/22/1208/29/15146Genomicunknown
ss659578877SSMP|13_111470038rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa12/14/1202/13/15138Genomicunknown
ss780686691ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs767210-131_T_R_1990494090rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa05/30/1307/10/15146Genomicunknown
ss783360222ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs767210-131_T_R_1990494090rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa05/31/1306/18/15146Genomicunknown
ss825596394ILLUMINA|HumanCNV370v1_C_rs767210-126_T_R_IFB1152716382:0rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa06/24/1311/21/14144Genomicunknown
ss833125202ILLUMINA|Human660W-Quad_v1_C_rs767210-131_T_R_1864368834rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa09/18/1307/02/15142Genomicunknown
ss833716030ILLUMINA|Human660W-Quad_v1_H_rs767210-131_T_R_1864368834rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa09/18/1307/02/15142Genomicunknown
ss990862671EVA-GONL|EVA-GONL_rs767210rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa04/23/1404/25/14142Genomicunknown
ss1079446471JMKIDD_LAB|HGDP_WGS_chr13_111470038rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa07/10/1407/12/14142Genomicunknown
ss13499401361000GENOMES|PHASE3_V1_63120965rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa08/16/1408/16/14142Genomicunknown
ss1427332564DDI|DDI_rs767210rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa11/04/1411/04/14144Genomicunknown
ss1577080250EVA_GENOME_DK|EVA_GENOME_DK_snv_rs767210rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa02/19/1502/19/15144Genomicunknown
ss1631192791EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_13_111470038_34945617rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa03/04/1503/04/15144Genomicunknown
ss1674186824EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_13_111470038_34945617rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa03/04/1503/04/15144Genomicunknown
ss1694856243EVA_DECODE|EVA_DECODE_13_110268039_739898_rs767210rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa03/02/1503/04/15144Genomicunknown
ss1713425143EVA_SVP|EVA_SVP_1119510rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa03/12/1503/12/15144Genomicunknown
ss1752093882ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs767210-131_T_R_1990494090rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa05/27/1506/09/15146Genomicunknown
ss1917885345ILLUMINA|HumanExome-12v1-1_B_exm-rs767210-131_T_R_1990494090rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa10/16/1510/16/15147Genomicunknown
ss1934225479WEILL_CORNELL_DGM|SNV:chr13:111470038rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa10/16/1510/17/15147Genomicunknown
ss1946369438ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs767210-131_T_R_1990494090rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa10/29/1510/29/15147Genomicunknown
ss1959530948ILLUMINA|exm-rs767210-131_T_R_1990494090rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa11/13/1511/13/15147Genomicunknown
ss2027889125JJLAB|SNP8391680rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa08/29/1608/31/16149Genomicunknown
ss2095048080ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs767210-138_T_R_2264364619rev/TA/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa09/27/1609/27/16150Genomicunknown
ss2156256745USC_VALOUEV|NC_000013.10:g.111470038G>Arev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa11/17/1611/17/16150Genomicunknown
ss2199868296HUMAN_LONGEVITY|HLI-13-110817691-G-Arev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa11/18/1611/18/16150Genomicunknown
ss2364120293TOPMED|13_111470038_G/Arev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa11/19/1611/19/16150Genomicunknown
ss2635049631ILLUMINA|Cancer_BeadChip_11459870_A_rs767210-128_T_R_1782885575rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa02/02/1702/02/17151Genomicunknown
ss2924538754GNOMAD|rs767210rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa05/23/1705/23/17151Genomicunknown
ss2985012013AFFY|Axiom_PsorMich_Affx-8969292rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa05/24/1705/24/17151Genomicunknown
ss3011727997SWEGEN|NC_000013.10:g.111470038G>Arev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa05/30/1705/30/17151Genomicunknown
ss3021542772ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs767210-131_T_R_1990494090rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa06/28/1706/28/17151Genomicunknown
ss3027768057BIOINF_KMB_FNS_UNIBA|13.110817691G>Arev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa07/05/1707/05/17151Genomicunknown
ss3203985423TOPMED|TOPMed_freeze_5?chr13:110,817,691rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa09/30/1709/30/17151Genomicunknown
ss3350669915CSHL|rs767210rev/A/Gtacattcacatttctgccagcattcctgtcgcctgatttttaagtataaa10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs767210|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 TACtcaataa gcagtactga ggcaatgcac taaacaaagg aaaatgagat tcgatcccta
 cttcacatta tattttaaaa aatcaattcc acatggatta aagacttcga tgtgaaaaaa
 aaaagccatt atgaacctct tacacgatga ggtagaggtt atctcctaaa cctcagagca
 gggagggctc ttaatacact catacataca cacaatcatg aaaataacca ataagctaag
 ctatgttaaa attgagaact tctactcatc aaaggacacc atcccaccaa gagattaaaa
 agacgagcca ggaagtagaa aagaatgcct gggcatgtac ctgacaaaac attcatatcc
 agcagatgtg gagaattcat atcagtcaac aaggtaaaag acaaacaacc taatagaaaa
 gtgctcaaaa atccccacca gacaattcac agaaaaggaA acaataagct accattttat
 acttaaaaat caggcgacag
 Y
 gaatgctggc agaaatgtga atgtagcaaa aaagggactc gttttcaatt ctggggaagg
 tggaaactcg ggtgaccact ttggaaagaa ctgggtgtca tctggtagat gtgagcatgt
 ccgttccatg gcccataata gcccttcttt gttgtatgcc tggaaaaatt ctggccctta
 tgtaataggg atgtttagaa gaatgttcac accagcattg tttgtaatag taaaaatatg
 taagcaacac aaacatctcc atcagtagta agctggataa atagattgtg gtctgttctg
 tgttagaaca ctctatagca gtgacacaga atgaaacaaa gccacttgaa ttcacatgat
 gtatctTGAG CAAAGAGAAG TCATAGAAGA CTACGTAATG TAAGATGCCA TTTGTGTAAG
 GTTCACAAAC AACAAAACCG AGCAGGACGT TTCTCCACTG AGACACACAT AGTGGAAAAC
 ACACAGGAAA AGCACAGGAA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_009952 ABBA01026991 AL157875.4
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs767210 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss1349940136EAS 1008AF 0.986099960.01390000
EUR 1006AF 0.861800010.13820000
AFR 1322AF 0.994700010.00530000
AMR 694AF 0.897699950.10230000
SAS 978AF 0.815999980.18400000
ss137312033ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 6IG0.66666669 0.33333334 0.666666690.33333334
ss16611230HapMap-CEUEuropean 226IG0.716814160.265486720.017699110.751830000.849557520.15044248
HapMap-HCBAsian 86IG1.00000000 1.00000000
HapMap-JPTAsian 172IG0.895348850.10465116 1.000000000.947674390.05232558
HapMap-YRISub-Saharan African 120IG1.00000000 1.00000000
HAPMAP-ASW 98IG0.918367330.08163265 1.000000000.959183690.04081633
HAPMAP-CHBAsian 82IG0.975609780.02439024 1.000000000.987804890.01219512
HAPMAP-CHD 170IG0.976470590.02352941 1.000000000.988235290.01176471
HAPMAP-GIH 176IG0.534090940.420454530.045454550.342782000.744318190.25568181
HAPMAP-MEX 100IG0.839999970.16000000 1.000000000.920000020.08000000
HAPMAP-MKK 286IG0.972027960.02797203 1.000000000.986014010.01398601
HAPMAP-TSI 176IG0.772727250.215909090.011363641.000000000.880681810.11931818
ENSEMBL_Watson 2IG1.00000000 1.00000000
ss168692541CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss236436758pilot_1_CEU_low_coverage_panel 120AF 0.858333350.14166667
ss24560875AFD_EUR_PANELEuropean 42IG0.714285730.28571430 0.751830000.857142870.14285715
AFD_AFR_PANELAfrican American 44IG0.954545440.04545455 1.000000000.977272750.02272727
AFD_CHN_PANELAsian 46IG1.00000000 1.00000000
ss97195120J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.151+/-0.2290000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement