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Reference SNP (refSNP) Cluster Report: rs763361                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.4896/59421 (ExAC)
C=0.4694/2351 (1000 Genomes)
C=0.4521/5880 (GO-ESP)
C=0.4640/58265 (TOPMED)
HGVS Names
  • CM000680.2:g.69864406T>A
  • CM000680.2:g.69864406T>C
  • NC_000018.10:g.69864406T>A
  • NC_000018.10:g.69864406T>C
  • NC_000018.9:g.67531642T>A
  • NC_000018.9:g.67531642T>C
  • NM_001303618.1:c.919A>G
  • NM_001303618.1:c.919A>T
  • NM_001303619.1:c.454A>G
  • NM_001303619.1:c.454A>T
  • NM_006566.3:c.919A>G
  • NM_006566.3:c.919A>T
  • NP_001290547.1:p.Ser307Cys
  • NP_001290547.1:p.Ser307Gly
  • NP_001290548.1:p.Ser152Cys
  • NP_001290548.1:p.Ser152Gly
  • NP_006557.2:p.Ser307Cys
  • NP_006557.2:p.Ser307Gly
  • XP_005266699.1:p.Ser307Cys
  • XP_005266699.1:p.Ser307Gly
  • XP_005266700.1:p.Ser152Cys
  • XP_005266700.1:p.Ser152Gly
  • XP_006722437.1:p.Ser184Cys
  • XP_006722437.1:p.Ser184Gly
  • XP_016881013.1:p.Ser152Cys
  • XP_016881013.1:p.Ser152Gly
  • XP_016881014.1:p.Ser152Cys
  • XP_016881014.1:p.Ser152Gly
  • XP_016881015.1:p.Ser152Cys
  • XP_016881015.1:p.Ser152Gly
  • XP_016881016.1:p.Ser152Cys
  • XP_016881016.1:p.Ser152Gly
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283054103 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs763361 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss149473TSC-CSHL|TSC0065114byFreqfwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg09/06/0004/07/0486Genomic95 %
ss2656309SC_JCM|AP002416.1_125765fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg11/03/0010/10/0392Genomicunknown
ss5197925TSC-CSHL|TSC0920720fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg09/20/0210/10/03108Genomicunknown
ss14404422WI_SSAHASNP|chr18.NT_025028.13_15322488fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg11/05/0311/22/03119Genomicunknown
ss24509880PERLEGEN|afd2524038byFreqfwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg08/10/0409/13/04123Genomicunknown
ss24803424SEQUENOM|sqnm168033fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg06/18/0406/18/04123cDNAunknown
ss44086831ABI|hCV1464836fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg07/18/0507/18/05126Genomicunknown
ss65729510ILLUMINA|Human1-rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg10/10/0610/10/06127Genomicunknown
ss66659517ILLUMINA|HumanHap300v1.1_rs763361fwd/TC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg11/09/0611/09/06127Genomicunknown
ss67810130ILLUMINA|HumanHap550v1.1_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg11/14/0611/14/06127Genomicunknown
ss67978435ILLUMINA|HumanHap650Yv1.0_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg11/14/0611/15/06127Genomicunknown
ss69218928PERLEGEN|PGP02524038byFreqfwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg01/30/0708/14/07127Genomicunknown
ss70939504ILLUMINA|HumanHap550v3.0__rs763361rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata04/20/0703/31/08130Genomicunknown
ss71542938ILLUMINA|HumanHap650Yv3.0_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg04/23/0704/23/07127Genomicunknown
ss74810442AFFY|SNP_M-183628fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg08/09/0708/09/07128Genomicunknown
ss75510564ILLUMINA|ILMN_Human_1M_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg08/28/0708/29/07129Genomicunknown
ss79264142ILLUMINA|HumanHap300v2.0_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg04/18/0711/18/07130Genomicunknown
ss83556042KRIBB_YJKIM|KHS488949fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg12/04/0712/05/07130Genomicunknown
ss96522118HUMANGENOME_JCVI|1103645232300fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg03/26/0803/26/08130Genomicunknown
ss103409358BGI|BGI_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg06/06/0806/19/09131Genomicunknown
ss1107956461000GENOMES|CEU.trio.12.15.2008_3546571_chr18_65682622fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg12/17/0812/17/08130Genomicunknown
ss120253550WTCCC|NT_025028.13_15322488fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg04/10/0904/24/09131Genomicunknown
ss122799307ILLUMINA|HumanCNV370v1_C_rs763361fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg04/14/0904/15/09131Genomicunknown
ss142895652ENSEMBL|ENSSNP9438412fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg12/08/0810/16/09131Genomicunknown
ss154436297ILLUMINA|Human610_Quadv1_B_rs763361-128_T_R_1501868346rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata06/18/0906/20/09131Genomicunknown
ss155370378GMI|GMI_SNP_34302646fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg06/24/0906/24/09131Genomicunknown
ss159611311ILLUMINA|Human660W-Quad_v1_A_rs763361-128_T_R_1501868346rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata07/06/0907/07/09131Genomicunknown
ss159737501SEATTLESEQ|CD226-65682622fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg07/10/0907/10/09131Genomicunknown
ss160897831ILLUMINA|HumanOmni1-Quad_v1-0_B_rs763361-128_T_R_1501868346rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata08/04/0910/05/09131Genomicunknown
ss171955341COMPLETE_GENOMICS|NA20431_36_chr18_65682622fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg10/01/0910/01/09132Genomicunknown
ss172321627ILLUMINA|HumanCNV370-Quadv3_C_rs763361-128_T_R_1501868346rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata10/01/0910/04/09132Genomicunknown
ss174464183ILLUMINA|Human1M-Duov3_B_rs763361-128_T_R_1501868346rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata10/01/0910/04/09132Genomicunknown
ss208154003BCM-HGSC-SUB|BCM_CMT_1011-3017122fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg03/15/1003/19/10132Genomicunknown
ss2119116991000GENOMES|YRI.trio.3.2010_1415144_chr18_65682622fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg03/29/1003/31/10132Genomicunknown
ss2279504941000GENOMES|pilot_1_YRI_9760177_chr18_65682622fwd/C/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg04/22/1004/22/10132Genomicunknown
ss2375331951000GENOMES|pilot_1_CEU_7137824_chr18_65682622fwd/C/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg05/01/1005/01/10132Genomicunknown
ss2437690471000GENOMES|pilot_1_CHB+JPT_5654124_chr18_65682622fwd/C/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg05/01/1005/01/10132Genomicunknown
ss244310324ILLUMINA|CVDSNP55v1_A_rs763361rev/TA/Gcccaataactatagaagtcccatctctaccgtcaacctaccaatcaatccatggatgata06/10/1006/10/10132Genomicunknown
ss255771800BL|SNP70307_18_65682622fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg08/20/1008/20/10134Genomicunknown
ss283054103GMI|GMI_AK_SNP_7374522fwd/C/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg12/16/1012/16/10137Genomicunknown
ss287313478GMI|GMI_NA10851_SNP_3326269fwd/C/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg12/17/1012/17/10138Genomicunknown
ss292101159PJP|SNP_1607517_chr18_65682622fwd/C/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg01/21/1101/21/11134Genomicunknown
ss342476576NHLBI-ESP|ESP2500-chr18-67531642byFreqfwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg03/25/1109/05/14134Genomicunknown
ss481624730ILLUMINA|HumanOmni2.5-4v1_B_rs763361-128_T_R_1615266194fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta01/30/1210/28/16137Genomicunknown
ss481655018ILLUMINA|HumanOmniExpress-12v1_C_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta01/30/1210/27/16137Genomicunknown
ss482622449ILLUMINA|HumanOmni1-Quad_v1-0_C_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta01/30/1208/28/15146Genomicunknown
ss485607187ILLUMINA|HumanOmni2.5-4v1_D_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta01/30/1210/27/16137Genomicunknown
ss4911416881000GENOMES|20110521_exome_649486_chr18_67531642fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg02/10/1202/22/12137Genomicunknown
ss491534460EXOME_CHIP|nonsyn_250686_chr_18_67531642fwd/BC/Ttatcatccatggattgattggtaggttgacggtagagatgggacttctatagttattggg03/05/1203/06/12137Genomicunknown
ss491751625CLINSEQ_SNP|SNV-chr18-65682622byFreqfwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/06/1209/05/14137Genomicunknown
ss537493942ILLUMINA|HumanOmni5-4v1_B_rs763361-131_T_R_1908543778fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta06/22/1208/29/15146Genomicunknown
ss565743539TISHKOFF|snp_chr18_67531642fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/22/1211/23/12138Genomicunknown
ss661584090SSMP|18_67531642fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta12/14/1202/14/15138Genomicunknown
ss778609583ILLUMINA|HumanOmni25Exome-8v1_A_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/30/1307/10/15146Genomicunknown
ss780737343ILLUMINA|HumanOmni25Exome-8v1_A_exm1391925-0_B_F_1921610981fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/30/1307/10/15142Genomicunknown
ss783249212ILLUMINA|HumanOmni2.5-4v1_H_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/30/1307/29/15146Genomicunknown
ss783414178ILLUMINA|HumanOmniExpressExome-8v1_A_exm1391925-0_B_F_1921610981fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/31/1306/19/15142Genomicunknown
ss784202844ILLUMINA|HumanOmniExpressExome-8v1_A_rs763361-131_T_R_1908543778fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/31/1306/19/15146Genomicunknown
ss825594660ILLUMINA|HumanCNV370v1_C_rs763361-126_T_R_IFB1135514890:0fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta06/24/1311/21/14147Genomicunknown
ss832509915ILLUMINA|HumanOmniExpress-12v1_H_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta09/17/1306/18/15146Genomicunknown
ss834066972ILLUMINA|HumanOmni2.5-8v1_A_rs763361-131_T_R_1854728888fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta09/18/1307/29/15146Genomicunknown
ss974502418JMKIDD_LAB|KhoeSan_Exomes_chr18_67531642fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/06/1403/06/14142Genomicunknown
ss993902162EVA-GONL|EVA-GONL_rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta04/23/1404/30/14142Genomicunknown
ss1067579921JMKIDD_LAB|HGDP_exomes_chr18_67531642fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta07/09/1407/09/14142Genomicunknown
ss1081631557JMKIDD_LAB|HGDP_WGS_chr18_67531642fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta07/10/1407/12/14142Genomicunknown
ss13616682621000GENOMES|PHASE3_V1_75328099fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta08/16/1408/16/14142Genomicunknown
ss1397750898HAMMER_LAB|HAMMER_LAB_rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta09/30/1409/30/14146Genomicunknown
ss1428273961DDI|DDI_rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/04/1411/04/14144Genomicunknown
ss1578476854EVA_GENOME_DK|EVA_GENOME_DK_snv_rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta02/19/1502/20/15144Genomicunknown
ss1584111653EVA_FINRISK|EVA_FINRISK_rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta02/27/1502/27/15144Genomicunknown
ss1637224753EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_18_67531642_41583275fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/04/1503/04/15144Genomicunknown
ss1680218786EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_18_67531642_41583275fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/04/1503/04/15144Genomicunknown
ss1693180714EVA_EXAC|EVA_EXAC_8584158fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/04/1503/04/15144Genomicunknown
ss1693180715EVA_EXAC|EVA_EXAC_8584159fwd/A/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/04/1503/04/15144Genomicunknown
ss1697965582EVA_DECODE|EVA_DECODE_18_65682622_509577_rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/02/1503/05/15144Genomicunknown
ss1711489008EVA_MGP|EVA_XIMO_604768fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/09/1503/09/15144Genomicunknown
ss1713638926EVA_SVP|EVA_SVP_1333005fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/12/1503/12/15144Genomicunknown
ss1752265797ILLUMINA|OmniExpressExome-8v1-1_B_exm1391925-0_B_F_2060132494fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/27/1506/09/15146Genomicunknown
ss1752265798ILLUMINA|OmniExpressExome-8v1-1_B_rs763361-131_T_R_1908543778fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/27/1506/09/15146Genomicunknown
ss1809125772HAMMER_LAB|Hsieh_8154722fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta07/15/1507/16/15146Genomicunknown
ss1917928293ILLUMINA|HumanExome-12v1-1_B_exm1391925-0_B_F_2060132494fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta10/16/1510/16/15147Genomicunknown
ss1937370387WEILL_CORNELL_DGM|SNV:chr18:67531642fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta10/16/1510/19/15147Genomicunknown
ss1946511885ILLUMINA|HumanCoreExome-12v1-0_C_exm1391925-0_B_F_2060132494fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta10/29/1510/29/15147Genomicunknown
ss1946511888ILLUMINA|HumanCoreExome-12v1-0_C_rs763361-131_T_R_1908543778fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta10/29/1510/29/15147Genomicunknown
ss1959816523ILLUMINA|exm1391925-0_B_F_1921610981fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/13/1511/13/15147Genomicunknown
ss1959816524ILLUMINA|rs763361-131_T_R_1908543778fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/13/1511/13/15147Genomicunknown
ss1968566377GENOMED|rs763361fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta02/16/1602/16/16147Genomicunknown
ss2029459299JJLAB|SNP9961854fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta08/29/1608/31/16149Genomicunknown
ss2094897789ILLUMINA|Immuno_BeadChip_11419691_B_imm_18_65682622-1_T_R_1670101033fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta09/27/1609/27/16150Genomicunknown
ss2095081798ILLUMINA|InfiniumImmunoArray-24v2-0_A_imm_18_65682622-1_T_R_2310677192fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta09/27/1609/27/16150Genomicunknown
ss2095081799ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs763361-138_T_R_2264335085fwd/BC/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta09/27/1609/27/16150Genomicunknown
ss2157966714USC_VALOUEV|NC_000018.9:g.67531642T>Cfwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/17/1611/17/16150Genomicunknown
ss2222903909HUMAN_LONGEVITY|HLI-18-69864406-T-Cfwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/18/1611/18/16150Genomicunknown
ss2388316129TOPMED|18_67531642_T/Cfwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta11/19/1611/19/16150Genomicunknown
ss2629228444SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6359687fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta01/06/1701/06/17151Genomicunknown
ss2633493927ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs763361-131_T_R_190854377fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta02/02/1702/02/17151Genomicunknown
ss2635079927ILLUMINA|Cancer_BeadChip_11459870_A_rs763361-128_T_R_1615266194fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta02/02/1702/02/17151Genomicunknown
ss2702562497GRF|rs763361fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta02/13/1702/13/17151Genomicunknown
ss2710872100ILLUMINA|Consortium-OncoArray_15047405_A_rs763361-131_T_R_1908543778fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta03/22/1703/22/17151Genomicunknown
ss2743344357GNOMAD|exomes_rs763361fwd/A/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/17/1705/17/17151Genomicunknown
ss2749972991GNOMAD|coding_rs763361fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/17/1705/17/17151Genomicunknown
ss2958487141GNOMAD|rs763361fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/23/1705/23/17151Genomicunknown
ss2985121729AFFY|Axiom_PsorMich_Affx-15281210fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/24/1705/24/17151Genomicunknown
ss2985760479AFFY|Axiom_Smokesc1_Affx-15281210fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/24/1705/24/17151Genomicunknown
ss3016789406SWEGEN|NC_000018.9:g.67531642T>Cfwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta05/30/1705/30/17151Genomicunknown
ss3021856729ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm1391925-0_B_F_1921610981fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta06/28/1706/28/17151Genomicunknown
ss3021856730ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs763361-138_T_R_2264335085fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta06/28/1706/28/17151Genomicunknown
ss3023071303EVA_SAMSUNG_MC|EXOMES.18:g67531642t>cfwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta07/03/1707/03/17151Genomicunknown
ss3028560015BIOINF_KMB_FNS_UNIBA|18.69864406T>Cfwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta07/05/1707/05/17151Genomicunknown
ss3283435666TOPMED|TOPMed_freeze_5?chr18:69,864,406fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta10/01/1710/01/17151Genomicunknown
ss3352102359CSHL|rs763361fwd/C/Ttccatggattgattggtaggttgacggtagagatgggacttctatagtta10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs763361|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/C/T'|mol=Genomic|build=151
 CATCTTGCCA ACACAAGAGG AAAGCCTGCA TGAGAGTGAG GCCAAGACCA GGGAAATGGA
 TCCAACACTC TGGAAAGGGA TTCAGAAGCC AGTTTATGCC CATACTTAAT TCTAGACACA
 ACATTTAAGC CCTGGTAAAT AGCCCTTGCC CAAAGCTTAA TCTCCCCTGG ATCATTCTGT
 TATATGATAC AGTAAGTTTT CTTTTGTATA TAAACCAGTT AGAGTCAGGT TTTCTGAAAC
 AGTTCTATGA AAAATGATTT TAGGTAATGA AGTATTTTTC CTATCAAAGT AACTCAATTC
 AGACAACTAG TATCTAAGGT AGACCTTGGG TAGTGGAAAA AAATTGCATA AAGATCCATG
 CATGAGTACA TAAGAGTCAT TACTAATGCA CTCATGTCAA GAATAAGCTT AAACTCTAGT
 CTTTGGTCTG CGAGAGAAGG TTGGATAGTT GACATAAATA TCCTCTCTTG TATCATCCAT
 GGATTGATTG GTAGGTTGAC
 H
 GGTAGAGATG GGACTTCTAT AGTTATTGGG TGCCTAGAAA GACAAACAGC AGAGAGTGTC
 AATAATTCAC TGCATTTCAA CAACTAATGA AGACATTCAA AACATACCTC TCATAAATGC
 AGGCATGATA TGGGACAAGT TTCCATTATA ATTAATTTGA TAAAACATTC TCATTGTATT
 GAACTTCTGT TGGAAATCAT ATTCTTGACT GAGATGCAAC AGAAATCTAG TCTAGATTAA
 TACTTGCTGT ATTGTGCTAT GAATTACCTG TTTCAATGTA GAACTCCCTC TCCCAATGTT
 AAGCTATTTT GATAAGAACA ATTACTATCA TTTTTATATG GAAATTCTAA CACAGTGTCT
 GAACTTTAAA AAATAAGCAA CTTAACATAT AAAAAGTTAA CAAAACTGAC ATCAAGATGA
 TATTGTATAA TCATTAATCT TCTCTACCGT AATCAAGTCA CTTTGACCAC ATATGTATGT
 ATGTAACAGA AAATATGCAG

  NCBI Resource Links back to top
Submitter-Referenced
dbSTSGenBank
sqnm168033 NT_025028.13 ABBA01056288 AP001566 AP001566.3 AP001585 AP001585.1 AP002445
dbSNP Blast Analysis
UniGene Cluster ID
369661

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC
C/C
C/T
N
T
T/T
HWPA
C
N
T
ss120253550ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1361668262EAS 1008AF 0.61210001 0.38789999
EUR 1006AF 0.52680004 0.47320002
AFR 1322AF 0.26320001 0.73680001
AMR 694AF 0.54759997 0.45240000
SAS 978AF 0.48670003 0.51330000
ss142895652ENSEMBL_Venter 2IG 1.00000000 0.50000000 0.50000000
ss149473CEPH 184AF 0.58999997 0.41000003
HapMap-CEUEuropean 224IG 0.250000000.50892860 0.241071431.00000000 0.50446427 0.49553570
HapMap-HCBAsian 86IG 0.418604640.51162791 0.069767450.29426600 0.67441863 0.32558140
HapMap-JPTAsian 170IG 0.258823540.55294120 0.188235300.31731000 0.53529412 0.46470588
HapMap-YRISub-Saharan African 222IG 0.035971220.41007194 0.553956810.15022200 0.25225225 0.74774772
CHMJAsian 74IG0.55405408 0.013513510.43243244 0.554054080.013513510.43243244
EURAME 32GF 0.37500000 0.62500000
AFRAME 30GF 0.69999999 0.30000001
HAPMAP-ASW 98IG 0.056603770.60377359 0.339622650.02505600 0.35714287 0.64285713
HAPMAP-CHBAsian 82IG 0.365853670.48780489 0.146341461.00000000 0.60975611 0.39024389
HAPMAP-CHD 164IG 0.390243890.51219511 0.097560970.29426600 0.64634144 0.35365853
HAPMAP-GIH 176IG 0.170454550.45454547 0.375000000.65472100 0.39772728 0.60227275
HAPMAP-LWK 180IG 0.055555560.37777779 0.566666661.00000000 0.24444444 0.75555557
HAPMAP-MEX 100IG 0.197368430.56578946 0.236842110.25059200 0.47000000 0.52999997
HAPMAP-MKK 286IG 0.076923080.38461539 0.538461571.00000000 0.26923078 0.73076922
HAPMAP-TSI 176IG 0.250000000.46590909 0.284090910.58388200 0.48295453 0.51704544
ss1693180714ExAc_Aggregated_Populations121411AF 0.51028323 0.48971674
ss1693180715ExAc_Aggregated_Populations 59458AF 0.00001682 0.99998319
ss171955341PGP 2IG 1.00000000 0.50000000 0.50000000
ss227950494pilot_1_YRI_low_coverage_panel 118AF 0.22033899 0.77966100
ss237533195pilot_1_CEU_low_coverage_panel 120AF 0.51666665 0.48333332
ss243769047pilot_1_CHB+JPT_low_coverage_panel 120AF 0.61666667 0.38333333
ss24509880AFD_EUR_PANELEuropean 48IG 0.166666670.66666669 0.166666670.15022200 0.50000000 0.50000000
AFD_AFR_PANELAfrican American 46IG 0.173913050.30434781 0.521739130.15022200 0.32608697 0.67391306
AFD_CHN_PANELAsian 48IG 0.541666690.20833333 0.250000000.01002800 0.64583331 0.35416666
ss342476576ESP_Cohort_Populations 4550GF 0.197802200.47472528 0.327472540.15022200 0.43516484 0.56483519
ss491751625CSAgilent 1320GF 0.248248250.52052051 0.231231240.29426600 0.50850850 0.49149150
ss69218928HapMap-CEUEuropean 120IG 0.283333330.48333332 0.233333331.00000000 0.52499998 0.47499999
HapMap-HCBAsian 90IG 0.422222230.51111114 0.066666670.25421300 0.67777777 0.32222223
HapMap-JPTAsian 90IG 0.311111120.44444445 0.244444440.47950000 0.53333336 0.46666667
HapMap-YRISub-Saharan African 120IG 0.050000000.44999999 0.500000000.34278200 0.27500001 0.72500002
ss96522118J. Craig Venter 2IG 1.00000000 0.50000000 0.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.500+/-0.0100000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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