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Reference SNP (refSNP) Cluster Report: rs7202877                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/G/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.1402/702 (1000 Genomes)
G=0.1313/16481 (TOPMED)
HGVS Names
  • CM000678.2:g.75213347T>C
  • CM000678.2:g.75213347T>G
  • NC_000016.9:g.75247245T>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss10838756 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7202877 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss10838756BCM_SSAHASNP|chr16.NT_024797.13_1958958byFreqfwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg06/30/0310/25/06116Genomicunknown
ss67555270ILLUMINA|HumanHap550v1.1_rs7202877fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg11/14/0611/14/06127Genomicunknown
ss67931192ILLUMINA|HumanHap650Yv1.0_rs7202877fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg11/14/0611/15/06127Genomicunknown
ss68272707ILLUMINA|HumanHap250Sv1.0_rs7202877fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg12/06/0612/07/06127Genomicunknown
ss70915822ILLUMINA|HumanHap550v3.0__rs7202877rev/TA/Cccagccctaaaaagccacacacgccctgacgtcacagaagacgcccactcggagttcgga04/20/0703/31/08130Genomicunknown
ss71514509ILLUMINA|HumanHap650Yv3.0_rs7202877fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg04/23/0704/23/07127Genomicunknown
ss75792892ILLUMINA|ILMN_Human_1M_rs7202877fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg08/28/0708/29/07129Genomicunknown
ss84636577KRIBB_YJKIM|KHS765154fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg12/04/0712/07/07130Genomicunknown
ss1094371731000GENOMES|CEU.trio.12.15.2008_3318767_chr16_73804746fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg12/16/0812/16/08130Genomicunknown
ss118307578ILLUMINA-UK|NA18507_000079938_NCBI36.1_chr16_73804746fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg01/20/0901/21/09130Genomic99 %
ss154412189ILLUMINA|Human610_Quadv1_B_rs7202877-116_T_R_1502270357rev/TA/Cccagccctaaaaagccacacacgccctgacgtcacagaagacgcccactcggagttcgga06/18/0906/20/09131Genomicunknown
ss157538252GMI|GMI_SNP_239966318fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg06/24/0906/25/09131Genomicunknown
ss159587294ILLUMINA|Human660W-Quad_v1_A_rs7202877-116_T_R_1502270357rev/TA/Cccagccctaaaaagccacacacgccctgacgtcacagaagacgcccactcggagttcgga07/06/0907/07/09131Genomicunknown
ss160859667ILLUMINA|HumanOmni1-Quad_v1-0_B_rs7202877-116_T_R_1502270357rev/TA/Cccagccctaaaaagccacacacgccctgacgtcacagaagacgcccactcggagttcgga08/04/0910/04/09131Genomicunknown
ss170176999COMPLETE_GENOMICS|NA19240_36_chr16_73804746fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg10/01/0910/01/09132Genomicunknown
ss171468025COMPLETE_GENOMICS|NA20431_36_chr16_73804746fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg10/01/0910/01/09132Genomicunknown
ss174287820ILLUMINA|Human1M-Duov3_B_rs7202877-116_T_R_1502270357rev/TA/Cccagccctaaaaagccacacacgccctgacgtcacagaagacgcccactcggagttcgga10/01/0910/04/09132Genomicunknown
ss2117339291000GENOMES|YRI.trio.3.2010_1326967_chr16_73804746fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg03/29/1003/30/10132Genomicunknown
ss2273232251000GENOMES|pilot_1_YRI_9132908_chr16_73804746fwd/G/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg04/22/1004/22/10132Genomicunknown
ss2370835081000GENOMES|pilot_1_CEU_6688137_chr16_73804746fwd/G/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg05/01/1005/01/10132Genomicunknown
ss2434119411000GENOMES|pilot_1_CHB+JPT_5297018_chr16_73804746fwd/G/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg05/01/1005/01/10132Genomicunknown
ss255806263BL|SNP79764_16_73804746fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg08/20/1008/20/10134Genomicunknown
ss282593499GMI|GMI_AK_SNP_6913916fwd/G/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg12/16/1012/16/10137Genomicunknown
ss287101553GMI|GMI_NA10851_SNP_3114344fwd/G/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg12/17/1012/17/10138Genomicunknown
ss410947527ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs7202877rev/TA/Cccagccctaaaaagccacacacgccctgacgtcacagaagacgcccactcggagttcgga06/07/1106/07/11135Genomicunknown
ss481503967ILLUMINA|HumanOmni2.5-4v1_B_rs7202877-128_T_R_1501544482fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg01/30/1210/28/16137Genomicunknown
ss481532566ILLUMINA|HumanOmniExpress-12v1_C_rs7202877-131_T_R_1857213150fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg01/30/1210/27/16137Genomicunknown
ss482508471ILLUMINA|HumanOmni1-Quad_v1-0_C_rs7202877-131_T_R_1865552640fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg01/30/1208/28/15146Genomicunknown
ss485547093ILLUMINA|HumanOmni2.5-4v1_D_rs7202877-131_T_R_1857213150fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg01/30/1210/27/16137Genomicunknown
ss491511295EXOME_CHIP|.GWAS._227521_chr_16_75247245fwd/BG/Ttccgaactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagggctgg03/05/1203/05/12137Genomicunknown
ss537449597ILLUMINA|HumanOmni5-4v1_B_rs7202877-131_T_R_1885473915fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg06/22/1208/29/15146Genomicunknown
ss564999171TISHKOFF|snp_chr16_75247245fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/22/1211/23/12138Genomicunknown
ss660778309SSMP|16_75247245fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg12/14/1202/14/15138Genomicunknown
ss778596519ILLUMINA|HumanOmni25Exome-8v1_A_rs7202877-131_T_R_1865552640fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/30/1307/10/15146Genomicunknown
ss780686395ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs7202877-131_T_R_1990493743fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/30/1307/10/15146Genomicunknown
ss783219102ILLUMINA|HumanOmni2.5-4v1_H_rs7202877-131_T_R_1857213150fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/30/1307/29/15146Genomicunknown
ss783359915ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs7202877-131_T_R_1990493743fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/31/1306/19/15146Genomicunknown
ss784173611ILLUMINA|HumanOmniExpressExome-8v1_A_rs7202877-131_T_R_1885473915fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/31/1306/19/15146Genomicunknown
ss832479311ILLUMINA|HumanOmniExpress-12v1_H_rs7202877-131_T_R_1857213150fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg09/17/1306/18/15146Genomicunknown
ss834053769ILLUMINA|HumanOmni2.5-8v1_A_rs7202877-131_T_R_1865552640fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg09/18/1307/29/15146Genomicunknown
ss992660446EVA-GONL|EVA-GONL_rs7202877fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg04/23/1404/30/14142Genomicunknown
ss1080741740JMKIDD_LAB|HGDP_WGS_chr16_75247245fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg07/10/1407/12/14142Genomicunknown
ss13569060141000GENOMES|PHASE3_V1_70371691fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg08/16/1408/16/14142Genomicunknown
ss1577979058EVA_GENOME_DK|EVA_GENOME_DK_snv_rs7202877fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg02/19/1502/19/15144Genomicunknown
ss1634772135EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_16_75247245_38883308fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg03/04/1503/04/15144Genomicunknown
ss1677766168EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_16_75247245_38883308fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg03/04/1503/04/15144Genomicunknown
ss1713550550EVA_SVP|EVA_SVP_1244917fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg03/12/1503/12/15144Genomicunknown
ss1752203451ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs7202877-131_T_R_1990493743fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/27/1506/09/15146Genomicunknown
ss1752203452ILLUMINA|OmniExpressExome-8v1-1_B_rs7202877-131_T_R_1885473915fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/27/1506/09/15146Genomicunknown
ss1808584793HAMMER_LAB|Hsieh_7611466fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg07/15/1507/16/15146Genomicunknown
ss1917909917ILLUMINA|HumanExome-12v1-1_B_exm-rs7202877-131_T_R_1990493743fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/16/1510/16/15147Genomicunknown
ss1936090651WEILL_CORNELL_DGM|SNV:chr16:75247245fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/16/1510/19/15147Genomicunknown
ss1946419613ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs7202877-131_T_R_1990493743fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/29/1510/29/15147Genomicunknown
ss1946419614ILLUMINA|HumanCoreExome-12v1-0_C_rs7202877-131_T_R_1885473915fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/29/1510/29/15147Genomicunknown
ss1959695435ILLUMINA|exm-rs7202877-131_T_R_1990493743fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/13/1511/13/15147Genomicunknown
ss1959695436ILLUMINA|rs7202877-131_T_R_1885473915fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/13/1511/13/15147Genomicunknown
ss1968295897GENOMED|rs7202877fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg02/16/1602/16/16147Genomicunknown
ss2028829458JJLAB|SNP9332013fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg08/29/1608/31/16149Genomicunknown
ss2094891726ILLUMINA|Immuno_BeadChip_11419691_B_imm_16_73804746-1_B_F_1670093418fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg09/27/1609/27/16150Genomicunknown
ss2095068928ILLUMINA|InfiniumImmunoArray-24v2-0_A_imm_16_73804746-1_B_F_2310589286fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg09/27/1609/27/16150Genomicunknown
ss2095068929ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs7202877-138_T_R_2264330512fwd/BG/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg09/27/1609/27/16150Genomicunknown
ss2157272368USC_VALOUEV|NC_000016.9:g.75247245T>Gfwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/17/1611/17/16150Genomicunknown
ss2213520490HUMAN_LONGEVITY|HLI-16-75213347-T-Gfwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/18/1611/18/16150Genomicunknown
ss2378276834TOPMED|16_75247245_T/Cfwd/C/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/19/1611/19/16150Genomicunknown
ss2378276835TOPMED|16_75247245_T/Gfwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg11/19/1611/19/16150Genomicunknown
ss2628906513SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5955856fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg01/06/1701/06/17151Genomicunknown
ss2633337873ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs7202877-131_T_R_18854739fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg02/02/1702/02/17151Genomicunknown
ss2701803345GRF|rs7202877fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg02/13/1702/13/17151Genomicunknown
ss2710837367ILLUMINA|Consortium-OncoArray_15047405_A_rs7202877-131_T_R_1885473915fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg03/22/1703/22/17151Genomicunknown
ss2944950923GNOMAD|rs7202877fwd/C/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/23/1705/23/17151Genomicunknown
ss2985074802AFFY|Axiom_PsorMich_Affx-13177296fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/24/1705/24/17151Genomicunknown
ss2985709076AFFY|Axiom_Smokesc1_Affx-13177296fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/24/1705/24/17151Genomicunknown
ss3014787562SWEGEN|NC_000016.9:g.75247245T>Gfwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg05/30/1705/30/17151Genomicunknown
ss3021724252ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs7202877-131_T_R_1990493743fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg06/28/1706/28/17151Genomicunknown
ss3021724253ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs7202877-138_T_R_2264330512fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg06/28/1706/28/17151Genomicunknown
ss3028231098BIOINF_KMB_FNS_UNIBA|16.75213347T>Gfwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg07/05/1707/05/17151Genomicunknown
ss3251008324TOPMED|TOPMed_freeze_5?chr16:75,213,347-01fwd/C/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/01/1710/01/17151Genomicunknown
ss3251008325TOPMED|TOPMed_freeze_5?chr16:75,213,347-02fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/01/1710/01/17151Genomicunknown
ss3351525261CSHL|rs7202877fwd/G/Tactccgagtgggcgtcttctgtgacgtcagggcgtgtgtggctttttagg10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7202877|allelePos=999|totalLen=1199|taxid=9606|snpclass=1|alleles='C/G/T'|mol=Genomic|build=151
 TTCCTGACCC AGGAGGACAG CGAGTGTGGG CGCCGGATGT CCAGCAGGCG CTCAGCCCTt
 gtggagatca gtgacatctg cccaaatggg aaccagcggg ggctgcttat tcagagcttg
 ccacagcaag ggagtcggcc tctgtcactt gcattgacta agacgccaag gccggcaggg
 tggagggaaa gcttcatgga gggaagggga aggctcgctg tgtcctggct ggtggctatt
 ggtgtgggga agtgggaggc aggctGCTGT GTGGTCTGCG TGTTTGTCCT ACTGACACTT
 GTATGGAAAT GTTATTAGTT TTTTGTGTTT TGTGTGTGtt tttttttttt aagagtcagg
 gtcttgcttt gttggtccag gccggagtgc agtggtgcga tcacagctta ctatatagcc
 ttgacctcct gggctcaagc gactctccca tctcagcctc ccgagtagct gggaccacag
 gtacacgcca ccaccctggc taattattta tttttgcaga gatgaggttt caacatgtta
 cccaggctca tcttgaactc ctgggctcaa gtgatccgcc tgccttgacc tcccaaagca
 ctggagttac aggtttgagt cactgcacct ggccGCATTG TTTgtattaa caggtgggac
 ctgtaagtgg tgattagcgt gtgggatggg gggggtgggg ctctgcttcc caggtgggat
 taatgccatt atattaataa aaggcaagca acccccctcg cgtctctctt tgcccttcca
 ccttccacca ggtgaagata tggagttcaa gacatcagcc tgtggccagg gtcgcccacc
 ctgcctgttg actttggact tgcagccttc agaactgtga gaaaatacat ttctatccac
 tataaatgac ccagtctgag gtattctgtc ccgcagcacT CAGGGCCTCA GGAGGCCTTC
 AGGCGCGCTC CGAACTCCGA GTGGGCGTCT TCTGTGAC
 B
 GTCAGGGCGT GTGTGGCTTT TTAGGGCTGG CCGGTGGGGC TGCTGCTGTT TGGAGCCCTG
 GGCTTGTTGC TGCGCAGCGG GCAGAGTTCT GGTTTTTTAG GCGGTCTGTC CCCTGTTCGC
 GTGTGTATTC AGTCTCTCCC CTTCCATGCA GAGTTTTGTG GCACAGGCGT GGGTACCGGG
 AGTTGCAAAG AGCTGGGGCC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_024797
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceG/G
G/T
T/T
HWPG
T
ss10838756HapMap-CEUEuropean 226IG0.026548670.168141590.805309710.150222000.110619470.88938051
HapMap-HCBAsian 86IG0.093023260.279069780.627906980.200325000.232558150.76744187
HapMap-JPTAsian 172IG0.034883720.348837200.616279070.654721000.209302320.79069769
HapMap-YRISub-Saharan African 226IG0.026548670.265486720.707964601.000000000.159292040.84070796
HAPMAP-ASW 98IG 0.285714300.714285730.583882000.142857150.85714287
HAPMAP-CHBAsian 82IG0.048780490.317073170.634146331.000000000.207317070.79268295
HAPMAP-CHD 170IG0.047058820.435294120.517647090.294266000.264705900.73529410
HAPMAP-GIH 176IG 0.113636370.886363631.000000000.056818180.94318181
HAPMAP-LWK 180IG0.066666670.300000010.633333330.273322000.216666670.78333336
HAPMAP-MEX 100IG 0.160000000.839999971.000000000.080000000.92000002
HAPMAP-MKK 286IG0.041958040.230769230.727272750.150222000.157342660.84265733
HAPMAP-TSI 176IG 0.136363640.863636371.000000000.068181820.93181819
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss118307578YRI 2IG 1.00000000 0.500000000.50000000
ss1356906014EAS 1008AF 0.213299990.78670001
EUR 1006AF 0.103400000.89660001
AFR 1322AF 0.186800000.81320000
AMR 694AF 0.082100000.91789997
SAS 978AF 0.080800000.91920000
ss170176999YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss171468025PGP 2IG 1.00000000 0.500000000.50000000
ss227323225pilot_1_YRI_low_coverage_panel 118AF 0.161016960.83898306
ss237083508pilot_1_CEU_low_coverage_panel 120AF 0.091666670.90833336
ss243411941pilot_1_CHB+JPT_low_coverage_panel 120AF 0.275000010.72500002

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.241+/-0.2500000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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