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Reference SNP (refSNP) Cluster Report: rs5753037                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:114/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.2788/1396 (1000 Genomes)
T=0.3149/39542 (TOPMED)
HGVS Names
  • CM000684.2:g.30185733C>A
  • CM000684.2:g.30185733C>T
  • NC_000022.10:g.30581722C>T
  • NC_000022.11:g.30185733C>A
  • NC_000022.11:g.30185733C>T
  • XR_938153.2:n.186-952G>A
  • XR_938153.2:n.186-952G>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283618869 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs5753037 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss8001965SC_SNP|NT_011520.8_9878024byFreqfwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta04/15/0310/25/06114Genomicunknown
ss13369291SC_SNP|NT_011520.9_9972291fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta10/22/0310/31/03119Genomicunknown
ss14867218PERLEGEN|PS00121038byFreqfwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta11/13/0304/07/04119Genomicunknown
ss24117454PERLEGEN|afd0121038byFreqfwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta08/10/0409/13/04123Genomicunknown
ss65951396AFFY|SNP_A-1653736fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/26/0610/26/06127Genomicunknown
ss66621283ILLUMINA|HumanHap300v1.1_rs5753037fwd/TC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta11/09/0611/09/06127Genomicunknown
ss67420296ILLUMINA|HumanHap550v1.1_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta11/14/0611/14/06127Genomicunknown
ss67781344ILLUMINA|HumanHap650Yv1.0_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta11/14/0611/14/06127Genomicunknown
ss70846993ILLUMINA|HumanHap550v3.0__rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta04/20/0703/31/08130Genomicunknown
ss71431756ILLUMINA|HumanHap650Yv3.0_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta04/23/0704/23/07127Genomicunknown
ss75438246ILLUMINA|ILMN_Human_1M_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta08/28/0708/29/07129Genomicunknown
ss78288729HGSV|Cor12878_SNV_20070510.chr22_28906276fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta10/17/0710/18/07129Genomicunknown
ss79209602ILLUMINA|HumanHap300v2.0_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta04/18/0711/18/07130Genomicunknown
ss82640424HGSV|Cor18555_SNV_20070510.chr22_28906276fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta11/27/0712/03/07130Genomicunknown
ss84423092KRIBB_YJKIM|KHS707420fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta12/04/0712/07/07130Genomicunknown
ss103853824BGI|BGI_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta06/07/0806/18/09131Genomicunknown
ss1126058941000GENOMES|CEU.trio.12.15.2008_3798907_chr22_28911722fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta12/17/0812/17/08130Genomicunknown
ss122473353ILLUMINA|HumanCNV370v1_C_rs5753037fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta04/14/0904/15/09131Genomicunknown
ss154340853ILLUMINA|Human610_Quadv1_B_rs5753037-127_B_F_1501804424fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta06/18/0906/20/09131Genomicunknown
ss157121715GMI|GMI_SNP_24926540fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta06/24/0906/25/09131Genomicunknown
ss159517438ILLUMINA|Human660W-Quad_v1_A_rs5753037-128_B_F_1501804424fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta07/06/0907/07/09131Genomicunknown
ss172040169ILLUMINA|HumanCNV370-Quadv3_C_rs5753037-127_B_F_1501804424fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta10/01/0910/04/09132Genomicunknown
ss173928085ILLUMINA|Human1M-Duov3_B_rs5753037-127_B_F_1501804424fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta10/01/0910/04/09132Genomicunknown
ss2286564091000GENOMES|pilot_1_YRI_10466092_chr22_28911722fwd/C/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta04/22/1004/22/10132Genomicunknown
ss2380508981000GENOMES|pilot_1_CEU_7655527_chr22_28911722fwd/C/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta05/01/1005/01/10132Genomicunknown
ss2441743921000GENOMES|pilot_1_CHB+JPT_6059469_chr22_28911722fwd/C/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta05/01/1005/01/10132Genomicunknown
ss283618869GMI|GMI_AK_SNP_7939290fwd/C/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta12/16/1012/16/10137Genomicunknown
ss287561589GMI|GMI_NA10851_SNP_3574389fwd/C/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta12/17/1012/17/10138Genomicunknown
ss292751503PJP|SNP_2257861_chr22_28911722fwd/C/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta01/21/1101/21/11134Genomicunknown
ss491570146EXOME_CHIP|.GWAS._286372_chr_22_30581722fwd/BC/Tgtattattgtaatattccctttatcaaaaactataactgaaatttataggtaagagttta03/05/1203/06/12137Genomicunknown
ss537314302ILLUMINA|HumanOmni5-4v1_B_rs5753037-131_B_F_1885473635fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga06/22/1208/29/15146Genomicunknown
ss566608422TISHKOFF|snp_chr22_30581722fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga11/22/1211/23/12138Genomicunknown
ss662539870SSMP|22_30581722fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga12/14/1202/14/15138Genomicunknown
ss780685646ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs5753037-131_B_F_1990483924fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga05/30/1307/10/15146Genomicunknown
ss783359142ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs5753037-131_B_F_1990483924fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga05/31/1306/19/15146Genomicunknown
ss825540120ILLUMINA|HumanCNV370v1_C_rs5753037-123_B_F_IFB1135354587:0fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga06/24/1311/21/14144Genomicunknown
ss995302753EVA-GONL|EVA-GONL_rs5753037fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga04/23/1405/01/14142Genomicunknown
ss1082624243JMKIDD_LAB|HGDP_WGS_chr22_30581722fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga07/10/1407/12/14142Genomicunknown
ss13669870461000GENOMES|PHASE3_V1_80871061fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga08/16/1408/16/14142Genomicunknown
ss1429243169DDI|DDI_rs5753037fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga11/04/1411/04/14144Genomicunknown
ss1579733606EVA_GENOME_DK|EVA_GENOME_DK_snv_rs5753037fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga02/19/1502/20/15144Genomicunknown
ss1639898599EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_22_30581722_44542801fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga03/04/1503/04/15144Genomicunknown
ss1682892632EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_22_30581722_44542801fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga03/04/1503/04/15144Genomicunknown
ss1699371967EVA_DECODE|EVA_DECODE_22_28911722_104261_rs5753037fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga03/02/1503/05/15144Genomicunknown
ss1713737412EVA_SVP|EVA_SVP_1431491fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga03/12/1503/12/15144Genomicunknown
ss1752418096ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs5753037-131_B_F_1990483924fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga05/27/1506/09/15146Genomicunknown
ss1917954721ILLUMINA|HumanExome-12v1-1_B_exm-rs5753037-131_B_F_1990483924fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/16/1510/16/15147Genomicunknown
ss1938869197WEILL_CORNELL_DGM|SNV:chr22:30581722fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/16/1510/19/15147Genomicunknown
ss1946585381ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs5753037-131_B_F_1990483924fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/29/1510/29/15147Genomicunknown
ss1959974391ILLUMINA|exm-rs5753037-131_B_F_1990483924fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga11/13/1511/13/15147Genomicunknown
ss1969263018GENOMED|rs5753037fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga02/16/1602/16/16147Genomicunknown
ss2030206136JJLAB|SNP10708691fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga08/29/1608/31/16149Genomicunknown
ss2094923291ILLUMINA|Immuno_BeadChip_11419691_B_imm_22_28911722-1_B_F_1670112905fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga09/27/1609/27/16150Genomicunknown
ss2095122548ILLUMINA|InfiniumImmunoArray-24v2-0_A_imm_22_28911722-1_B_F_2310598564fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga09/27/1609/27/16150Genomicunknown
ss2095122549ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs5753037-138_B_F_2264362153fwd/BC/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga09/27/1609/27/16150Genomicunknown
ss2158822397USC_VALOUEV|NC_000022.10:g.30581722C>Tfwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga11/17/1611/17/16150Genomicunknown
ss2246968473HUMAN_LONGEVITY|HLI-22-30185733-C-Tfwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga11/18/1611/18/16150Genomicunknown
ss2413911138TOPMED|22_30581722_C/Tfwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga11/19/1611/19/16150Genomicunknown
ss2629601754SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6829508fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga01/06/1701/06/17151Genomicunknown
ss2633871997ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs5753037-131_B_F_18854736fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga02/02/1702/02/17151Genomicunknown
ss2633871998ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs5753037-131_B_F_2130fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga02/02/1702/02/17151Genomicunknown
ss2704573554GRF|rs5753037fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga02/13/1702/13/17151Genomicunknown
ss2710956133ILLUMINA|Consortium-OncoArray_15047405_A_rs5753037-131_B_F_1885473635fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga03/22/1703/22/17151Genomicunknown
ss2973881181GNOMAD|rs5753037fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga05/23/1705/23/17151Genomicunknown
ss2985853210AFFY|Axiom_Smokesc1_Affx-19371709fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga05/24/1705/24/17151Genomicunknown
ss3019228537SWEGEN|NC_000022.10:g.30581722C>Tfwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga05/30/1705/30/17151Genomicunknown
ss3022180947ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs5753037-131_B_F_1990483924fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga06/28/1706/28/17151Genomicunknown
ss3028940673BIOINF_KMB_FNS_UNIBA|22.30185733C>Tfwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga07/05/1707/05/17151Genomicunknown
ss3352815603CSHL|rs5753037fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/02/1710/02/17151Genomicunknown
ss3376025687TOPMED|TOPMed_freeze_5?chr22:30,185,733-01fwd/A/Cattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/03/1710/03/17151Genomicunknown
ss3376025688TOPMED|TOPMed_freeze_5?chr22:30,185,733-02fwd/C/Tattgtaatattccctttatcaaaaactataactgaaatttataggtaaga10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs5753037|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/C/T'|mol=Genomic|build=151
 GGAACCAGGA GAGCCTGGAC CAGTTCTCTG GCCCCTCCTC CAGGCATTTG GGTTACTGTC
 GAGCAAAAGC GAGCTTCGTC GGAACCTAGT TTATGCTTAA CTGAAACTTG GGCATTAGTC
 AGAAACAACT CAGCCTTCAA AATGAGGCCC ACAGGGAAGC TGTTTTTATT AATGAAACTC
 ATTTATGATT ATAGTATATA AAGCAATCAT TTGCATGCTA TGAACTGTTT AAGAGATTAT
 GGTGATGATA CAATGTGTAG AGAGGTAGAA AAGTTACAGA GTTTACAAGA CGATAAACCA
 CCTTTCAATA ACTTACTATT GTTTAGATTT CAAGTGCTTC TTAAAATGGA TAAGCTAAAT
 AAACTCTAAC ATAGTTCTAG CTAAAAGTCA TTAGTCTAAC AGTTCTGGTG GAAACTGTTA
 AACCAATTCT GCAACCAAAA AGATAAACAG CTAAAAACTG CCAGGTATCA GTATTATTGT
 AATATTCCCT TTATCAAAAA
 H
 CTATAACTGA AATTTATAGG TAAGAGTTTA CAGTAAGCAG CAGGTACCTG GAAACTTGTC
 AGTTAAGGTT TCCCTTTATA GAAGAACCTC TGCTGTAAGC TTTTCAGCCC TCTAAAGCCA
 GTAAAATTAA AAAAAAAAAA ATAAAAAGAG CTTTCACTAT TAGTTTCTAA GGAAATTATA
 TAAAGGTCAT AATACTAAGA GAAAAGCTTT AAATTGTCAT TTCCAATAGG ACATAAGCCT
 CCTAAGAAAA AAACAACCTT GTGTGTTTTT CTTGGGGGGG GAGGCATATA TAAATAACAA
 TCAAAAATCT TTTTCTTTCT TGATTTAATT TTAAAGGTGA TAGTTAACTA AATCACTTTA
 AAATGACTTC CTGCTGCTCC CCCAACCTCC TCAAAATTAA GAATACAACA AATATTTGCA
 TAGGTTTATT ATTCACATTT AATCATGAAT AATTCACTTT GTACAGACAG CTGGGTAAAC
 AAGAGATTTG GAGTTTCCTT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011520
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss1366987046EAS 1008AF 0.445400000.55460000
EUR 1006AF 0.594399990.40560001
AFR 1322AF 0.889599980.11040001
AMR 694AF 0.752200010.24780001
SAS 978AF 0.886500000.11350000
ss14867218AfAmAfrican American 12IG0.833333310.16666667 0.916666690.08333334
CaucasianEuropean 22IG0.545454560.45454547 0.583882000.772727250.22727273
AsianAsian 12IG0.166666670.500000000.33333334 0.416666660.58333331
CEPHEuropean 10IG0.80000001 0.20000000 0.800000010.20000000
PDpanelGlobal 46IG0.565217380.391304340.043478260.751830000.760869560.23913044
ss228656409pilot_1_YRI_low_coverage_panel 118AF 0.898305060.10169491
ss238050898pilot_1_CEU_low_coverage_panel 120AF 0.566666660.43333334
ss24117454AFD_EUR_PANELEuropean 40IG0.349999990.400000010.250000000.402784000.550000010.44999999
AFD_AFR_PANELAfrican American 46IG0.782608690.21739130 1.000000000.891304370.10869565
AFD_CHN_PANELAsian 48IG0.250000000.416666660.333333340.438578000.458333340.54166669
ss244174392pilot_1_CHB+JPT_low_coverage_panel 120AF 0.400000010.60000002
ss8001965HapMap-CEUEuropean 226IG0.300884960.495575220.203539821.000000000.548672560.45132744
HapMap-HCBAsian 84IG0.261904780.619047640.119047620.099721000.571428600.42857143
HapMap-JPTAsian 170IG0.152941180.400000010.447058830.254213000.352941190.64705884
HapMap-YRISub-Saharan African 226IG0.829787250.156028380.014184400.371093000.898230080.10176991
HAPMAP-ASW 98IG0.660377380.320754710.018867920.527089000.826530640.17346939
HAPMAP-CHBAsian 80IG0.200000000.524999980.275000010.751830000.462500010.53750002
HAPMAP-CHD 166IG0.144578310.445783140.409638550.751830000.367469880.63253009
HAPMAP-GIH 176IG0.772727250.204545450.022727270.583882000.875000000.12500000
HAPMAP-LWK 176IG0.659090940.318181810.022727270.527089000.818181810.18181819
HAPMAP-MEX 100IG0.584415560.350649360.064935070.751830000.759999990.23999999
HAPMAP-MKK 284IG0.661971810.295774640.042253520.654721000.809859160.19014084
HAPMAP-TSI 174IG0.356321840.482758610.160919551.000000000.597701130.40229884
AX-AM 20IG0.500000000.300000010.200000000.294266000.649999980.34999999
AX-AT 20IG 0.800000010.200000000.099721000.400000010.60000002
AX-ME 10IG1.00000000 1.00000000
CEU 118IG0.322033910.491525410.186440681.000000000.567796590.43220338
CHB 90IG0.244444440.644444470.111111110.050043000.566666660.43333334
CN-CC 52IG0.461538460.269230780.269230780.025056000.596153860.40384614
CN-GA 60IG0.200000000.533333360.266666680.751830000.466666670.53333336
CN-HM 50IG0.040000000.440000000.519999980.479500000.259999990.74000001
CN-JI 56IG0.285714300.535714270.178571430.751830000.553571400.44642857
CN-JN 58IG0.172413800.413793120.413793120.527089000.379310340.62068963
CN-SH 42IG0.142857150.714285730.142857150.050043000.500000000.50000000
CN-UG 52IG0.346153860.423076930.230769230.479500000.557692290.44230768
CN-WA 112IG0.071428570.410714300.517857131.000000000.276785700.72321427
ID-AL 38IG0.684210540.31578946 0.751830000.842105270.15789473
ID-DY 24IG0.166666670.500000000.333333341.000000000.416666660.58333331
ID-JA 68IG0.205882360.352941190.441176470.150222000.382352950.61764705
ID-JV 36IG0.277777790.500000000.222222221.000000000.527777790.47222221
ID-KR 34IG0.294117660.352941190.352941190.250592000.470588240.52941179
ID-LA 38IG0.578947370.42105263 0.479500000.789473710.21052632
ID-LE 36IG0.500000000.277777790.222222220.099721000.638888900.36111110
ID-ML 24IG0.333333340.416666660.250000000.583882000.541666690.45833334
ID-MT 28IG0.214285720.500000000.285714301.000000000.464285700.53571427
ID-RA 34IG0.176470590.647058840.176470590.250592000.500000000.50000000
ID-SB 40IG0.200000000.699999990.100000000.099721000.550000010.44999999
ID-SO 38IG0.263157900.578947370.157894730.479500000.552631560.44736841
ID-SU 50IG0.239999990.400000010.360000010.371093000.440000000.56000000
ID-TB 38IG0.421052630.526315810.052631580.342782000.684210540.31578946
ID-TR 40IG0.349999990.550000010.100000000.438578000.625000000.37500000
IN-DR 48IG0.916666690.041666670.041666670.002501000.937500000.06250000
IN-EL 32IG0.875000000.12500000 1.000000000.937500000.06250000
IN-IL 30IG0.533333360.400000010.066666671.000000000.733333350.26666668
IN-NI 38IG0.578947370.315789460.105263160.438578000.736842100.26315790
IN-NL 28IG0.928571400.07142857 1.000000000.964285730.03571429
IN-SP 46IG0.782608690.173913050.043478260.273322000.869565190.13043478
IN-TB 46IG0.260869560.434782590.304347810.583882000.478260870.52173913
IN-WI 50IG0.759999990.200000000.040000000.402784000.860000010.14000000
IN-WL 28IG0.785714270.21428572 1.000000000.892857130.10714286
JP-ML 142IG0.070422540.436619730.492957740.654721000.288732380.71126759
JP-RK 96IG0.062500000.375000000.56250000 0.250000000.75000000
JPT 86IG0.139534890.465116290.395348851.000000000.372093020.62790698
KR-KR 180IG0.122222220.500000000.377777790.527089000.372222210.62777776
MY-BD 96IG0.229166670.500000000.270833341.000000000.479166660.52083331
MY-JH 100IG0.560000000.360000010.080000000.654721000.740000010.25999999
MY-KN 36IG0.722222210.166666670.111111110.050043000.805555580.19444445
MY-KS 60IG0.666666690.33333334 0.583882000.833333310.16666667
MY-MN 40IG0.550000010.400000010.050000001.000000000.750000000.25000000
MY-TM 98IG0.306122450.591836750.102040820.150222000.602040830.39795917
PI-AE 16IG0.375000000.375000000.25000000 0.562500000.43750000
PI-AG 14IG0.142857150.714285730.14285715 0.500000000.50000000
PI-AT 40IG0.200000000.550000010.250000000.654721000.474999990.52499998
PI-IR 18IG0.555555580.44444445 0.777777790.22222222
PI-MA 36IG 0.833333310.166666670.020022000.416666660.58333331
PI-MW 34IG0.705882370.235294120.058823530.438578000.823529420.17647059
PI-UB 40IG0.349999990.449999990.200000000.751830000.574999990.42500001
PI-UI 38IG0.368421050.421052630.210526320.583882000.578947370.42105263
PI-UN 38IG0.315789460.473684220.210526321.000000000.552631560.44736841
SG-CH 52IG0.192307700.461538460.346153861.000000000.423076930.57692307
SG-ID 60IG0.666666690.266666680.066666670.371093000.800000010.20000000
SG-ML 58IG0.172413800.758620680.068965520.004998000.551724140.44827586
TH-HM 36IG0.111111110.277777790.611111100.273322000.250000000.75000000
TH-KA 34IG0.058823530.529411790.411764710.402784000.323529420.67647058
TH-LW 38IG0.157894730.473684220.368421051.000000000.394736860.60526317
TH-MA 34IG 0.470588240.529411790.438578000.235294120.76470590
TH-MO 36IG0.444444450.277777790.277777790.099721000.583333310.41666666
TH-PL 28IG0.428571430.357142870.214285720.371093000.607142870.39285713
TH-PP 36IG0.277777790.555555580.166666670.654721000.555555580.44444445
TH-TK 36IG0.277777790.500000000.222222221.000000000.527777790.47222221
TH-TL 40IG0.100000000.400000010.500000001.000000000.300000010.69999999
TH-TN 32IG0.250000000.625000000.125000000.294266000.562500000.43750000
TH-TU 38IG0.315789460.315789460.368421050.150222000.473684220.52631581
TH-TY 36IG0.166666670.555555580.277777790.654721000.444444450.55555558
TH-YA 38IG0.105263160.473684220.421052631.000000000.342105270.65789473
TW-HA 96IG0.166666670.500000000.333333341.000000000.416666660.58333331
TW-HB 62IG0.161290320.483870950.354838701.000000000.403225810.59677422
YRI 120IG0.850000020.133333340.016666670.342782000.916666690.08333334

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.402+/-0.1980000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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