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Reference SNP (refSNP) Cluster Report: rs56350816                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:129/150
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • NC_000007.14:g.142348457G>A
  • NG_001333.2:g.162804A=
  • NG_001333.2:g.162804A>G
  • NW_003571040.1:g.512092G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss78088978 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs56350816 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss78088978HGSV|Cor12878_SNV_20070510.chr7_141523276fwd/TA/Gctaataacagagaaaaccaatatagacaaagattttaaacaggactatcggattatggtc10/17/0710/17/07129Genomicunknown
ss162794776COMPLETE_GENOMICS|NA07022_36_chr7_141716561fwd/TA/Gctaataacagagaaaaccaatatagacaaagattttaaacaggactatcggattatggtc09/28/0909/29/09149Genomicunknown
ss2298611230HUMAN_LONGEVITY|HLI-7-142348457-G-Afwd/A/Gaacagagaaaaccaatatagacaaagattttaaacaggactatcggatta11/18/1611/18/16150Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs56350816|allelePos=201|totalLen=686|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=150
 GTGGTTCTGC CTGCTGGGGT CTCACCCCAG GAACAGAAAG CAGGAGCCCT GGGTGGAGCT
 GAAAGTGCTC ATCTGGGTTT GTCAGGAGTC CCATCTGTCA GTGAATTCAC AAGAAACAGA
 ACAAAACAAC TCTTCCAATG TTGATGAGCC TGCCCCTGGG ATTTGGAAAG CTAATAACAG
 AGAAAACCAA TATAGACAAA
 R
 GATTTTAAAC AGGACTATCG GATTATGGTC ATTTAAGCAA ATTAGAAAAG GATACTTGAA
 GGAGTATTTG GGACACAGGA ATCAAAAACA CCAGGAAGAC ATGAGGAGTT TTTCCAAGAT
 TGTAGACTAT AGCAATACTT AGATAACCAA TACCAGTGTA TTAATGAGTA ATTATTAGTA
 TTATTATTTT GAGATGGAGT CGCACTCTAT CATCCAGGCT GGAATGCAGT GGCATGATCT
 CGGCTTACTG CAACCTCCGC CTCCCTGGTT CAAGAATTCT GGTGCCTCCG CCTCCCGAGT
 AGCTGGGACT ATAGGTGCAC GTCAGGATGC CTGGATAATT TCTATATTTT TAGTACAGAT
 GGGATTTCAC CATGTTGGTC AGGCTGGTCT CCAACTCCTG GCCTGAAGTG ATCTGCTCTC
 TTCAGCCTCC CAAAGGGCTA GGATTACAGG CATGGGCCAC TATGCACAGC CAAGTAATTT
 GTATC

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceG/G
HWPG
ss162794776CEUEuropean 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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