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Reference SNP (refSNP) Cluster Report: rs424964                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:80/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (REV)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4253/2130 (1000 Genomes)
A=0.4077/51196 (TOPMED)
HGVS Names
  • CM000676.2:g.30516597A>G
  • NC_000014.8:g.30985803A>G
  • NC_000014.9:g.30516597A>G
  • NR_151720.1:n.255+44140T>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss12289031 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs424964 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss562025SC_JCM|AC019275.3_68369fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt07/12/0010/10/0380Genomicunknown
ss1449409TSC-CSHL|TSC0314081fwd/BC/Tggaaatacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt09/06/0010/10/0392Genomic95 %
ss12289031WI_SSAHASNP|chr14.NT_026437.10_10905842byFreqrev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc07/04/0304/07/04116Genomicunknown
ss21189924SSAHASNP|WGSA-200403-chr14.chr14.NT_026437.10_10905842rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc03/19/0403/19/04121Genomicunknown
ss24541607PERLEGEN|afd0162438byFreqrev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc08/10/0409/13/04123Genomicunknown
ss43652853ABI|hCV2361545rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc07/18/0507/18/05126Genomicunknown
ss66747580ILLUMINA|HumanHap300v1.1_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt11/09/0611/09/06127Genomicunknown
ss67321173ILLUMINA|HumanHap550v1.1_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt11/14/0611/14/06127Genomicunknown
ss67725192ILLUMINA|HumanHap650Yv1.0_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt11/14/0611/14/06127Genomicunknown
ss70797069ILLUMINA|HumanHap550v3.0__rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt04/20/0703/30/08130Genomicunknown
ss71375344ILLUMINA|HumanHap650Yv3.0_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt04/23/0704/23/07127Genomicunknown
ss75721448ILLUMINA|ILMN_Human_1M_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt08/28/0708/29/07129Genomicunknown
ss76595958AFFY|AFFY_6_1M_SNP_A-8457235rev/TA/Gactggcttctaaattagatgtttgccctgata08/28/0708/30/07129Genomicunknown
ss77789356HGSV|Cor12156_SNV_20070510.chr14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc10/09/0710/14/07129Genomicunknown
ss79177557ILLUMINA|HumanHap300v2.0_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt04/18/0711/18/07130Genomicunknown
ss83451163KRIBB_YJKIM|KHS464723fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt12/04/0712/05/07130Genomicunknown
ss89895546BCMHGSC_JDW|JWB-0754416rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc02/26/0802/28/08129Genomicunknown
ss96848018HUMANGENOME_JCVI|1103649022574rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc03/27/0803/27/08130Genomicunknown
ss103173268BGI|BGI_rs424964rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc06/05/0806/18/09131Genomicunknown
ss1082146781000GENOMES|CEU.trio.12.15.2008_3016769_chr14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc12/15/0812/15/08130Genomicunknown
ss1130980621000GENOMES|NA19240_2008_12_16_2703482_chr14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc12/18/0812/18/08130Genomicunknown
ss122284020ILLUMINA|HumanCNV370v1_C_rs424964fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt04/14/0904/15/09131Genomicunknown
ss133896787ENSEMBL|ENSSNP10859838rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc05/11/0905/15/09131Genomicunknown
ss137077326ENSEMBL|ENSSNP977864rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc12/08/0810/15/09131Genomicunknown
ss154286798ILLUMINA|Human610_Quadv1_B_rs424964-127_B_F_1501771463fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt06/18/0906/20/09131Genomicunknown
ss155586678GMI|GMI_SNP_247850321rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc06/24/0906/24/09131Genomicunknown
ss159463727ILLUMINA|Human660W-Quad_v1_A_rs424964-128_B_F_1501771463fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt07/06/0907/07/09131Genomicunknown
ss160667946ILLUMINA|HumanOmni1-Quad_v1-0_B_rs424964-128_B_F_1501771463fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt08/04/0910/04/09131Genomicunknown
ss167765581COMPLETE_GENOMICS|NA07022_36_chr14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc09/30/0909/30/09132Genomicunknown
ss169049438COMPLETE_GENOMICS|NA19240_36_chr14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc10/01/0910/01/09132Genomicunknown
ss170911823COMPLETE_GENOMICS|NA20431_36_chr14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc10/01/0910/01/09132Genomicunknown
ss171759290ILLUMINA|HumanCNV370-Quadv3_C_rs424964-127_B_F_1501771463fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt10/01/0910/04/09132Genomicunknown
ss173702704ILLUMINA|Human1M-Duov3_B_rs424964-127_B_F_1501771463fwd/BC/Tgaaattacccaatgtatcagggcaaacatctaatttagaagccagtgcatttttatttgt10/01/0910/04/09132Genomicunknown
ss199881941BUSHMAN|BUSHMAN-chr14-30055553byFreqrev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc02/16/1009/05/14132Genomicunknown
ss2264882191000GENOMES|pilot_1_YRI_8297902_chr14_30055554rev/A/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc04/22/1004/22/10132Genomicunknown
ss2364810791000GENOMES|pilot_1_CEU_6085708_chr14_30055554rev/A/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc05/01/1005/01/10132Genomicunknown
ss2429274991000GENOMES|pilot_1_CHB+JPT_4812576_chr14_30055554rev/A/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc05/01/1005/01/10132Genomicunknown
ss254875006BL|SNP14296_14_30055554rev/TA/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc08/19/1008/19/10134Genomicunknown
ss281941933GMI|GMI_AK_SNP_6262322rev/A/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc12/16/1012/16/10137Genomicunknown
ss286813257GMI|GMI_NA10851_SNP_2826048rev/A/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc12/17/1012/17/10138Genomicunknown
ss291693179PJP|SNP_1199537_chr14_30055554rev/A/Gacaaataaaaatgcactggcttctaaattagatgtttgccctgatacattgggtaatttc01/21/1101/21/11134Genomicunknown
ss480909899ILLUMINA|HumanOmni2.5-4v1_B_rs424964-128_B_F_1770556494rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta01/30/1210/28/16137Genomicunknown
ss480928939ILLUMINA|HumanOmniExpress-12v1_C_rs424964-131_B_F_1857557765rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta01/30/1210/27/16137Genomicunknown
ss481886496ILLUMINA|HumanOmni1-Quad_v1-0_C_rs424964-131_B_F_1865488968rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta01/30/1208/28/15146Genomicunknown
ss485249965ILLUMINA|HumanOmni2.5-4v1_D_rs424964-131_B_F_1857557765rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta01/30/1210/27/16137Genomicunknown
ss537221544ILLUMINA|HumanOmni5-4v1_B_rs424964-131_B_F_1891298438rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta06/22/1208/29/15146Genomicunknown
ss564000359TISHKOFF|snp_chr14_30985803rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta11/22/1211/23/12138Genomicunknown
ss659663124SSMP|14_30985803rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta12/14/1202/13/15138Genomicunknown
ss778532265ILLUMINA|HumanOmni25Exome-8v1_A_rs424964-131_B_F_1865488968rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta05/30/1307/10/15146Genomicunknown
ss783070930ILLUMINA|HumanOmni2.5-4v1_H_rs424964-131_B_F_1857557765rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta05/30/1307/29/15146Genomicunknown
ss784028752ILLUMINA|HumanOmniExpressExome-8v1_A_rs424964-131_B_F_1891298438rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta05/31/1306/18/15146Genomicunknown
ss825508075ILLUMINA|HumanCNV370v1_C_rs424964-126_B_F_IFB1136229023:0rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta06/24/1311/21/14144Genomicunknown
ss832329046ILLUMINA|HumanOmniExpress-12v1_H_rs424964-131_B_F_1857557765rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta09/17/1306/18/15146Genomicunknown
ss833988806ILLUMINA|HumanOmni2.5-8v1_A_rs424964-131_B_F_1865488968rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta09/18/1307/29/15146Genomicunknown
ss990981959EVA-GONL|EVA-GONL_rs424964rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta04/23/1404/25/14142Genomicunknown
ss1079529557JMKIDD_LAB|HGDP_WGS_chr14_30985803rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta07/10/1407/12/14142Genomicunknown
ss13503905671000GENOMES|PHASE3_V1_63590266rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta08/16/1408/16/14142Genomicunknown
ss1427373637DDI|DDI_rs424964rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta11/04/1411/04/14144Genomicunknown
ss1577149131EVA_GENOME_DK|EVA_GENOME_DK_snv_rs424964rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta02/19/1502/19/15144Genomicunknown
ss1631412529EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_14_30985803_35187643rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta03/04/1503/04/15144Genomicunknown
ss1674406562EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_14_30985803_35187643rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta03/04/1503/04/15144Genomicunknown
ss1694973423EVA_DECODE|EVA_DECODE_14_30055554_88541_rs424964rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta03/02/1503/04/15144Genomicunknown
ss1713433298EVA_SVP|EVA_SVP_1127665rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta03/12/1503/12/15144Genomicunknown
ss1752127983ILLUMINA|OmniExpressExome-8v1-1_B_rs424964-131_B_F_1891298438rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta05/27/1506/09/15146Genomicunknown
ss1807852821HAMMER_LAB|Hsieh_6876424rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta07/15/1507/16/15146Genomicunknown
ss1934357619WEILL_CORNELL_DGM|SNV:chr14:30985803rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta10/16/1510/17/15147Genomicunknown
ss1946373485ILLUMINA|HumanCoreExome-12v1-0_C_rs424964-131_B_F_1891298438rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta10/29/1510/29/15147Genomicunknown
ss1959544191ILLUMINA|rs424964-131_B_F_1891298438rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta11/13/1511/13/15147Genomicunknown
ss1967925787GENOMED|rs424964rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta02/16/1602/16/16147Genomicunknown
ss2027953339JJLAB|SNP8455894rev/TA/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta08/29/1608/31/16149Genomicunknown
ss2156324880USC_VALOUEV|NC_000014.8:g.30985803A>Grev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta11/17/1611/17/16150Genomicunknown
ss2200713097HUMAN_LONGEVITY|HLI-14-30516597-A-Grev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta11/18/1611/18/16150Genomicunknown
ss2365014856TOPMED|14_30985803_A/Grev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta11/19/1611/19/16150Genomicunknown
ss2628465197SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5394656rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta01/06/1701/06/17151Genomicunknown
ss2633131910ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs424964-131_B_F_189129843rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta02/02/1702/02/17151Genomicunknown
ss2700741079GRF|rs424964rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta02/13/1702/13/17151Genomicunknown
ss2710796203ILLUMINA|Consortium-OncoArray_15047405_A_rs424964-131_B_F_1891298438rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta03/22/1703/22/17151Genomicunknown
ss2925944207GNOMAD|rs424964rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta05/23/1705/23/17151Genomicunknown
ss3011949450SWEGEN|NC_000014.8:g.30985803A>Grev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta05/30/1705/30/17151Genomicunknown
ss3021556720ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs424964-138_B_F_2276578339rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta06/28/1706/28/17151Genomicunknown
ss3027799288BIOINF_KMB_FNS_UNIBA|14.30516597A>Grev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta07/05/1707/05/17151Genomicunknown
ss3207165390TOPMED|TOPMed_freeze_5?chr14:30,516,597rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta10/01/1710/01/17151Genomicunknown
ss3350732735CSHL|rs424964rev/A/Gtaaaaatgcactggcttctaaattagatgtttgccctgatacattgggta10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs424964|allelePos=201|totalLen=1193|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 ATGCCATGTT CTACTTCCCA CCTGATGCAC AATTGCAGCA AGTAACATGA GCACGAATAA
 AAGGAAAGCT TTTTGATAAG AGTCTCTGTG ATTTTTGTCA TTTTCAAAAG GGAAAATATC
 CTAAACATGT TATTTGATAT TCAAAATATA CCCTAGACTA GAACAACCAG GAAATTACCC
 AATGTATCAG GGCAAACATC
 Y
 TAATTTAGAA GCCAGTGCAT TTTTATTTGT AAGAGTGCCt gagaattcat tgagcttaga
 gtaaggagat tcatttatac ggtctgcaac cactccaggt atagttacac ttctagccat
 tctggtgtag ggatggctgt caggaatact tctactacct actgtgccaa ctcactccat
 gttacagtgt aatgtttcag ggctagagtc ttatcatgat atcaatgtat cttatgaaac
 tgccaccagt aatatgtggg tagcggagga gaaaaacact ttagaaatgc attaaaccag
 agctagcctg tggaaaattt ttccaatcat tatacatgga aaattgtagg atttcattct
 cactgactcc agttaaagta gaatttctat cctgtcaggc atatacttga taatagagca
 gagttgataa taaatgcacc actaagtctt ttctttattg ataggaattg catgagatag
 gactcatctc atattcctat ttgtcaggga caaatttata gcagtactGT tattctttct
 gtggagaata ttgcaaaatc attgccatag gagggattca aacaatagac aaaaaacatg
 ggaaaaaata acagaagtgt atcagacagt tcattcacaa aatagtaatt tttgtggtat
 taagatattt atagcattta tcagctttaa gaatttttca atttgctttg ttttgattgc
 actcattaca aactgatact tgctttcata tctaagtgtt tgctatttta attaaagata
 gtacctctag attatataag atttaggtac cacaaaacct gtatctactc ttgATATACT
 GCTCATAAAA TGAATTAAAG TAGTATTCTT TTGTATAGTT CCTGTTATAT TGATCTAGCA
 TGCTTCAGGT AAAAACAGAA AACAATGATT CTCTCTGTAA AGGGAAATCT CTGGTTGATG
 AGAGTTAACT TAAAATAATT GTGGTGGGTC TT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_026437 ABBA01061401 AL117355
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs424964 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC
C/C
C/T
N
T
T/T
HWPC
N
T
ss12289031HapMap-CEUEuropean 226IG 0.362831860.49557522 0.141592920.654721000.61061949 0.38938054
HapMap-HCBAsian 86IG 0.186046510.46511629 0.348837201.000000000.41860464 0.58139533
HapMap-JPTAsian 172IG 0.186046510.45348838 0.360465110.583882000.41279069 0.58720928
HapMap-YRISub-Saharan African 226IG 0.530973430.38938054 0.079646021.000000000.72566372 0.27433628
CHMJAsian 74IG0.37837839 0.013513510.60810810 0.378378390.013513510.60810810
HAPMAP-ASW 98IG 0.551020380.38775510 0.061224491.000000000.74489796 0.25510204
HAPMAP-CHBAsian 82IG 0.170731710.51219511 0.317073171.000000000.42682928 0.57317072
HAPMAP-CHD 168IG 0.202380960.45238096 0.345238090.527089000.42857143 0.57142860
HAPMAP-GIH 176IG 0.488636370.32954547 0.181818190.020022000.65340906 0.34659091
HAPMAP-LWK 180IG 0.500000000.44444445 0.055555560.317310000.72222221 0.27777779
HAPMAP-MEX 100IG 0.140000000.30000001 0.560000000.099721000.28999999 0.70999998
HAPMAP-MKK 286IG 0.629370630.35664335 0.013986010.099721000.80769229 0.19230770
HAPMAP-TSI 176IG 0.375000000.44318181 0.181818190.479500000.59659094 0.40340909
ss133896787ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1350390567EAS 1008AF 0.41769999 0.58229995
EUR 1006AF 0.61330003 0.38670000
AFR 1322AF 0.75489998 0.24509999
AMR 694AF 0.37460002 0.62540001
SAS 978AF 0.59509999 0.40489998
ss137077326ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss167765581CEUEuropean 2IG 1.00000000 1.00000000
ss169049438YRISub-Saharan African 2IG 1.00000000 1.00000000
ss170911823PGP 2IG 1.00000000 0.50000000 0.50000000
ss199881941BUSHMAN_POP2 2IG 1.00000000 0.50000000 0.50000000
BANTU 2IG 1.00000000 0.50000000 0.50000000
ss226488219pilot_1_YRI_low_coverage_panel 118AF 0.72881359 0.27118644
ss236481079pilot_1_CEU_low_coverage_panel 120AF 0.62500000 0.37500000
ss242927499pilot_1_CHB+JPT_low_coverage_panel 120AF 0.40000001 0.60000002
ss24541607AFD_EUR_PANELEuropean 48IG 0.375000000.41666666 0.208333330.527089000.58333331 0.41666666
AFD_AFR_PANELAfrican American 46IG 0.347826090.60869563 0.043478260.150222000.65217394 0.34782609
AFD_CHN_PANELAsian 48IG 0.166666670.45833334 0.375000001.000000000.39583334 0.60416669
ss96848018J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.489+/-0.0740000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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