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Reference SNP (refSNP) Cluster Report: rs398121828                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:138/150
Map to Genome Build:108/Weight 1
Validation Status:
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/ATC (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • NC_000022.10:g.38529895_38529896insATC
  • NC_000022.11:g.38133888_38133889insATC
  • NG_007094.2:g.76802_76803insGAT
  • NM_001004426.1:c.895-876_895-875insGAT
  • NM_001199562.1:c.895-876_895-875insGAT
  • NM_003560.2:c.895-876_895-875insGAT
  • XM_005261764.1:c.895-876_895-875insGAT
  • XM_005261764.2:c.895-876_895-875insGAT
  • XM_005261765.1:c.895-876_895-875insGAT
  • XM_005261766.1:c.895-876_895-875insGAT
  • XM_005261767.1:c.679-876_679-875insGAT
  • XM_005261768.1:c.478-876_478-875insGAT
  • XM_005261769.1:c.478-876_478-875insGAT
  • XM_005261770.1:c.217-876_217-875insGAT
  • XM_005261771.1:c.895-876_895-875insGAT
  • XM_005261772.1:c.790-876_790-875insGAT
  • XM_006724332.3:c.895-876_895-875insGAT
  • XM_011530422.1:c.790-876_790-875insGAT
  • XM_011530423.1:c.361-876_361-875insGAT
  • XM_011530424.1:c.361-876_361-875insGAT
  • XM_011530425.1:c.361-876_361-875insGAT
  • XM_011530426.2:c.895-876_895-875insGAT
  • XM_017028981.1:c.895-876_895-875insGAT
  • XM_017028982.1:c.895-876_895-875insGAT
  • XM_017028983.1:c.361-876_361-875insGAT
  • XM_017028984.1:c.361-876_361-875insGAT
  • XM_017028985.1:c.217-876_217-875insGAT
  • XM_017028986.1:c.895-876_895-875insGAT
  • XM_017028987.1:c.895-876_895-875insGAT
  • XM_017028988.1:c.895-876_895-875insGAT
  • XR_001755325.1:n.1006-876_1006-875insGAT
  • XR_001755327.1:n.1006-876_1006-875insGAT
  • XR_001755328.1:n.1006-876_1006-875insGAT
  • XR_001755329.1:n.882-876_882-875insGAT
  • XR_244390.1:n.1003-876_1003-875insGAT
  • XR_244390.2:n.1006-876_1006-875insGAT
  • XR_244391.1:n.882-876_882-875insGAT
  • XR_244392.1:n.1003-876_1003-875insGAT
  • XR_937938.2:n.1006-876_1006-875insGAT
  • XR_937939.2:n.1006-876_1006-875insGAT
  • XR_937940.2:n.1006-876_1006-875insGAT
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss288556479 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs398121828 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss288556479GMI|GMI_NA10851_INDEL_311963fwd/-/ATCccatcatcatccatcatcatcatcatcatcttgatggttaataatgagtgtcaacttgat04/26/1012/22/10138Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs398121828|allelePos=501|totalLen=1001|taxid=9606|snpclass=2|alleles='-/ATC'|mol=Genomic|build=138
 ATGCACATCC CTGGCAGAGC CTTGGGAACA GGGAGGGGAG CCTGGCTTTG GAGTCACAGA
 CCTGAGCCCA AAGCCCAGCT TCACTCATCC CAGCTGCCTG CGCTTGGATG GGTCACTGTA
 GCCATGTGCA CTTCAGGGCT TCTGTGAAGA TGGGAATGCA AGTCCCCACC TCACAGCATG
 TGATGACAAT GAGTGACCAA ACCTACACGG AAGGGCCTGA CTCGGTGTCC GGCTCCTGGA
 ATGCAGAGGT ACCCTGAGGC TGGCAGTGCC CTCCCTCCTG GCCCATCACA TTGAGAAGTA
 GGCCATGAAC TCTGGGGCAT CCCATTCTCT GTCAAGCTGT GCTTCCTGGT GATGAGACCA
 GAGGCCTCCA TCCTCCCAGG AGGACAGAGC TTAGCTTAGG GGAAGAACTC AGAGGAGATG
 CCCAGCCAGG CTCCCTGTGT GTGCAGCTAG GCCCAGCACC ACCACCACCA CCATCATCAT
 CCATCATCAT CATCATCATC
 N
 TTGATGGTTA ATAATGAGTG TCAACTTGAT TGGATTGAAG GATGTAAAGT ATTGACCCTG
 GGTGTGTCTG AGAGGGTGCT GCTAACGGAG ATTAACATTT GAGTCAGTAG GGGAAGGCAG
 ACCTACCCTT AATCTGGGTG GGCACCATCT AATCAGCTGC CAGCACGGCC AGAATATAAA
 GCAGGCAGAA AAAAATGTGA AAAGGCTAGA CTGGCTTAGC CTCCCAGCCT ACATCTTTCT
 CCCGTGCTGG ATGCTTCCTG CCCTCAAACA TCAGACTCCA AGTCCTTCAG CTCTGGGACT
 TGGACTGGCT TCCTTGCTCC TCAGCTTGCG ATGGCCTATT GTGGGACCTT GTGATCGTGT
 GAGTTAATGC TCCTTAATAA ATCCCCCTTT AGGCCAGGCA CGGTGGCTCA CGCCTATAAT
 CCCAGCACTT TGGGAGGCCA AGGCAGGCAG ATCACGAGGT CAGGAGATCG AGACCATCCT
 GGCTAACACG GTGAAACCTC

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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