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Reference SNP (refSNP) Cluster Report: rs386134083                 
RefSNP
Organism:cow (Bos taurus)
Molecule Type:Genomic
Created/Updated in build:138/148
Map to Genome Build:105/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:G/T (FWD)
Allele Origin:
Ancestral Allele:Not available
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss678809338 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs386134083 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss678809338TZ_TUM|1_45540504fwd/BG/Ttggtcacttacggttgtgagagctggaccgaacgaaggcagaacaccaaagaattgatgc01/19/1301/22/13138Genomicunknown
ss997374805AGL_CJW|1:g45540504T>Gfwd/BG/Tacttacggttgtgagagctggaccgaacgaaggcagaacaccaaagaatt05/23/1405/23/14142Genomicunknown
ss1400258463HAFL_QUALITAS|HAFL_QUALITAS_SLIG_291009fwd/BG/Tacttacggttgtgagagctggaccgaacgaaggcagaacaccaaagaatt10/17/1410/17/14143Genomicunknown
ss1507253073EVA_LIVESTOCK|UGBT.1:g45540504t>gfwd/BG/Tacttacggttgtgagagctggaccgaacgaaggcagaacaccaaagaatt12/08/1412/10/14143Genomicunknown
ss1821547685MARC|1_45540504fwd/BG/Tacttacggttgtgagagctggaccgaacgaaggcagaacaccaaagaatt08/29/1508/29/15146Genomicunknown
ss1850671867NIAS_AGBSGL|NIAS_AGBSGL-2015.9:SNV:1:g.45540504T>Gfwd/BG/Tacttacggttgtgagagctggaccgaacgaaggcagaacaccaaagaatt09/18/1509/18/15146Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs386134083|allelePos=51|totalLen=101|taxid=9913|snpclass=1|alleles='G/T'|mol=Genomic|build=146
 CAAGGCTATG GTCTTCCCAG TGGTCACTTA CGGTTGTGAG AGCTGGACCG
 K
 AACGAAGGCA GAACACCAAA GAATTGATGC CTTCGAACTG TGGTGCTGGA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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