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Reference SNP (refSNP) Cluster Report: rs3129889                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:103/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G/T (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.0433/217 (1000 Genomes)
G=0.0898/11274 (TOPMED)
HGVS Names
  • CM000668.2:g.32445768G>A
  • CM000668.2:g.32445768G>T
  • NC_000006.11:g.32413545G>A
  • NC_000006.12:g.32445768G>A
  • NC_000006.12:g.32445768G>T
  • NG_002392.2:g.10068A=
  • NG_002392.2:g.10068A>G
  • NG_002392.2:g.10068A>T
  • NT_113891.3:g.3883857A=
  • NT_113891.3:g.3883857A>G
  • NT_113891.3:g.3883857A>T
  • NT_167245.1:g.3691664A=
  • NT_167245.1:g.3691664A>G
  • NT_167245.2:g.3686079A=
  • NT_167245.2:g.3686079A>G
  • NT_167245.2:g.3686079A>T
  • NT_167246.1:g.3755612A=
  • NT_167246.1:g.3755612A>G
  • NT_167246.2:g.3749992A=
  • NT_167246.2:g.3749992A>G
  • NT_167246.2:g.3749992A>T
  • NT_167247.1:g.3792325A=
  • NT_167247.1:g.3792325A>G
  • NT_167247.2:g.3786740A=
  • NT_167247.2:g.3786740A>G
  • NT_167247.2:g.3786740A>T
  • NT_167248.1:g.3674419A=
  • NT_167248.1:g.3674419A>G
  • NT_167248.2:g.3668823A=
  • NT_167248.2:g.3668823A>G
  • NT_167248.2:g.3668823A>T
  • NT_167249.1:g.3760215A=
  • NT_167249.1:g.3760215A>G
  • NT_167249.2:g.3760917A=
  • NT_167249.2:g.3760917A>G
  • NT_167249.2:g.3760917A>T
  • NT_187692.1:g.8965C>A
  • NT_187692.1:g.8965C>T
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss278730797 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3129889 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss4377108SC_JCM|AL662796.2_120135fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc02/19/0210/10/03103Genomicunknown
ss12693608SI_MHC_SNP|AL662796.6_121138_GAbyFreqfwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc09/10/0310/25/06118Genomicunknown
ss23716099PERLEGEN|afd0292638byFreqfwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc08/10/0409/13/04123Genomicunknown
ss65845328KRIBB_YJKIM|KHS21124fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc10/17/0611/15/06127Genomicunknown
ss75251941ILLUMINA|ILMN_Human_1M_rs3129889fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc08/28/0708/29/07129Genomicunknown
ss77259135HGSV|Cor12156_SNV_20070510.chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc10/09/0710/12/07129Genomicunknown
ss84769958HGSV|Cor18517_SNV_20070510.chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc12/06/0712/07/07130Genomicunknown
ss93438003BCMHGSC_JDW|JWB-2121743fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc02/26/0803/04/08129Genomicunknown
ss98380622HUMANGENOME_JCVI|1103652828941fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc03/31/0803/31/08130Genomicunknown
ss105991484BGI|BGI_rs3129889fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc09/12/0806/18/09130Genomicunknown
ss1099073031000GENOMES|CEU.trio.12.15.2008_1488652_chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc12/16/0812/16/08137Genomicunknown
ss1141534191000GENOMES|NA19240_2008_12_16_1336407_chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc12/18/0812/18/08137Genomicunknown
ss116397210ILLUMINA-UK|NA18507_000050894_NCBI36.1_chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc01/17/0901/17/09130Genomic99 %
ss119455146KRIBB_YJKIM|KHS1617393fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc02/04/0902/04/09131Genomicunknown
ss143877012ENSEMBL|ENSSNP9949168fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc12/08/0810/17/09131Genomicunknown
ss156754600GMI|GMI_SNP_77239761fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc06/24/0906/25/09131Genomicunknown
ss160613010ILLUMINA|HumanOmni1-Quad_v1-0_B_rs3129889-128_B_R_1514214121rev/BC/Tgcagtctaccacactatcatgaatagtttacttagtggtttatggcaggttctagaaact08/04/0910/04/09131Genomicunknown
ss162204379COMPLETE_GENOMICS|NA07022_36_chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc09/28/0909/28/09132Genomicunknown
ss163355740COMPLETE_GENOMICS|NA19240_36_chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc09/29/0909/29/09132Genomicunknown
ss166443275COMPLETE_GENOMICS|NA20431_36_chr6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc09/30/0909/30/09132Genomicunknown
ss173567314ILLUMINA|Human1M-Duov3_B_rs3129889-128_B_R_1514214121rev/BC/Tgcagtctaccacactatcatgaatagtttacttagtggtttatggcaggttctagaaact10/01/0910/04/09132Genomicunknown
ss201633193BUSHMAN|BUSHMAN-chr6-32521522fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc02/16/1003/08/10132Genomicunknown
ss207301152BCM-HGSC-SUB|BCM_CMT_1011-1233039fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc03/15/1003/18/10132Genomicunknown
ss2223075771000GENOMES|pilot_1_YRI_4117260_chr6_32521523fwd/A/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc04/22/1004/22/10137Genomicunknown
ss2334022741000GENOMES|pilot_1_CEU_3006903_chr6_32521523fwd/A/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc05/01/1005/01/10137Genomicunknown
ss2404731271000GENOMES|pilot_1_CHB+JPT_2358204_chr6_32521523fwd/A/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc05/01/1005/01/10137Genomicunknown
ss254193700BL|SNP44701_6_32521523fwd/TA/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc08/19/1008/19/10137Genomicunknown
ss278730797GMI|GMI_AK_SNP_3051038fwd/A/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc12/16/1012/16/10137Genomicunknown
ss285375690GMI|GMI_NA10851_SNP_1388463fwd/A/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc12/17/1012/17/10138Genomicunknown
ss293827622PJP|SNP_3333980_chr6_32521523fwd/A/Gagtttctagaacctgccataaaccactaagtaaactattcatgatagtgtggtagactgc01/21/1101/21/11137Genomicunknown
ss410928515ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs3129889rev/BC/Tgcagtctaccacactatcatgaatagtttacttagtggtttatggcaggttctagaaact06/07/1106/07/11137Genomicunknown
ss480759313ILLUMINA|HumanOmni2.5-4v1_B_rs3129889-128_B_R_1767301548fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag01/30/1210/28/16137Genomicunknown
ss480775099ILLUMINA|HumanOmniExpress-12v1_C_rs3129889-131_B_R_1857420752fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag01/30/1210/27/16137Genomicunknown
ss481666385ILLUMINA|HumanOmni1-Quad_v1-0_C_rs3129889-131_B_R_1865435218fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag01/30/1208/28/15146Genomicunknown
ss485174362ILLUMINA|HumanOmni2.5-4v1_D_rs3129889-131_B_R_1857420752fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag01/30/1210/28/16137Genomicunknown
ss537164434ILLUMINA|HumanOmni5-4v1_B_rs3129889-131_B_R_1911652905fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag06/22/1208/29/15146Genomicunknown
ss559118296TISHKOFF|snp_chr6_32413545fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag11/22/1211/23/12138Genomicunknown
ss653041162SSMP|6_32413545fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag12/14/1202/11/15138Genomicunknown
ss778888938ILLUMINA|HumanOmni25Exome-8v1_A_rs3129889-131_B_R_1866546906fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/30/1307/09/15146Genomicunknown
ss783033366ILLUMINA|HumanOmni2.5-4v1_H_rs3129889-131_B_R_1857420752fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/30/1307/28/15146Genomicunknown
ss783992986ILLUMINA|HumanOmniExpressExome-8v1_A_rs3129889-131_B_R_1911652905fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/31/1306/19/15146Genomicunknown
ss832291007ILLUMINA|HumanOmniExpress-12v1_H_rs3129889-131_B_R_1857420752fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag09/17/1306/19/15146Genomicunknown
ss834350028ILLUMINA|HumanOmni2.5-8v1_A_rs3129889-131_B_R_1866546906fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag09/18/1307/28/15146Genomicunknown
ss982774314EVA-GONL|EVA-GONL_rs3129889fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag04/23/1404/24/14142Genomicunknown
ss1073510792JMKIDD_LAB|HGDP_WGS_chr6_32413545fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag07/10/1407/11/14142Genomicunknown
ss13195801581000GENOMES|PHASE3_V1_31513680fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag08/16/1408/16/14142Genomicunknown
ss1397450832HAMMER_LAB|HAMMER_LAB_rs3129889fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag09/30/1407/15/15146Genomicunknown
ss1581610319EVA_GENOME_DK|EVA_GENOME_DK_snv_rs3129889fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag02/19/1502/20/15144Genomicunknown
ss1592317838EVA_DECODE|EVA_DECODE_6_32521523_281876_rs3129889fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag03/02/1503/03/15144Genomicunknown
ss1615289828EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_6_32413545_17480840fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag03/04/1503/04/15144Genomicunknown
ss1658283861EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_6_32413545_17480840fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag03/04/1503/04/15144Genomicunknown
ss1712852233EVA_SVP|EVA_SVP_546600fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag03/12/1503/12/15144Genomicunknown
ss1752630942ILLUMINA|OmniExpressExome-8v1-1_B_rs3129889-131_B_R_1911652905fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/27/1506/09/15146Genomicunknown
ss1804361324HAMMER_LAB|Hsieh_3371245fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag07/15/1507/15/15146Genomicunknown
ss1926026414WEILL_CORNELL_DGM|SNV:chr6:32413545fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag10/16/1510/17/15147Genomicunknown
ss1946174575ILLUMINA|HumanCoreExome-12v1-0_C_rs3129889-131_B_R_1911652905fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag10/29/1510/29/15147Genomicunknown
ss1958891870ILLUMINA|rs3129889-131_B_R_1885734072fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag11/13/1511/13/15147Genomicunknown
ss1970359595GENOMED|rs3129889fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag02/16/1602/16/16147Genomicunknown
ss2023647132JJLAB|SNP4149687fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag08/29/1608/30/16149Genomicunknown
ss2094825998ILLUMINA|Immuno_BeadChip_11419691_B_rs3129889-131_B_R_1866546906fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag09/27/1609/27/16150Genomicunknown
ss2095179396ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs3129889-131_B_R_1866546906fwd/TA/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag09/27/1609/27/16150Genomicunknown
ss2151814616USC_VALOUEV|NC_000006.11:g.32413545G>Afwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag11/17/1611/17/16150Genomicunknown
ss2282985066HUMAN_LONGEVITY|HLI-6-32445768-G-Afwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag11/18/1611/18/16150Genomicunknown
ss2451362985TOPMED|6_32413545_G/Afwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag11/20/1611/20/16150Genomicunknown
ss2626311595SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV2645794fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag01/06/1701/06/17151Genomicunknown
ss2634432698ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_Seq-rs3129889-131_B_R_2130fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag02/02/1702/02/17151Genomicunknown
ss2634432699ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs3129889-131_B_R_19116529fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag02/02/1702/02/17151Genomicunknown
ss2707408807GRF|rs3129889fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag02/13/1702/13/17151Genomicunknown
ss2711070531ILLUMINA|Consortium-OncoArray_15047405_A_rs3129889-131_B_R_1911652905fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag03/22/1703/22/17151Genomicunknown
ss2837489447GNOMAD|rs3129889fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/18/1705/18/17151Genomicunknown
ss2985995821AFFY|Axiom_Smokesc1_Affx-28474753fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/24/1705/24/17151Genomicunknown
ss2998808722SWEGEN|NC_000006.11:g.32413545G>Afwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag05/30/1705/30/17151Genomicunknown
ss3022602792ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs3129889-138_B_R_2264330571fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag06/28/1706/28/17151Genomicunknown
ss3025610856BIOINF_KMB_FNS_UNIBA|6.32445768G>Afwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag07/05/1707/05/17151Genomicunknown
ss3493983996TOPMED|TOPMed_freeze_5?chr6:32,445,768-01fwd/A/Gctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag10/05/1710/05/17151Genomicunknown
ss3493983997TOPMED|TOPMed_freeze_5?chr6:32,445,768-02fwd/G/Tctagaacctgccataaaccactaagtaaactattcatgatagtgtggtag10/05/1710/05/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs3129889|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G/T'|mol=Genomic|build=151
 AGTGGGATTG GTTTGTTGGG AGATCTCTAC TGAGCAATGA TATAACTCTA TCTTCAGTAG
 AGTGAATCTG AAACCCCAAG GTATGGATCT CAGAATGCAT GGGATGGAGG GGAGCAGATG
 GGGTTAGAGT GGGGAGAAGG AAGACAGAAG AATCCATAAA CATTGCAGGA TTTACATATC
 AACATCGTTC ATTCCAGATT TAATGAGCAA AGAGATTGGA CACTGAAGAC TGGCCTTACC
 CATTCTGTTA GACATAGTCT CAGATGCCTA TTGTATTACC GAGAGAGTAG TCTGACTGAT
 TCTTGAAACC ACCTTATATT TGAAGATGTG TCTTTGAGTG GAAAAGCTGA GTGAAATTTG
 GGGTTGGGGA GAAAGATATG ACATTAAGAT GAGAGGAAGG AATATTTGAA ACACGATGAA
 CTGTTGCTCA TTTGTCTATA AAACTATGAC TTGATATTTA TCTCTAAAAT AGTTTCTAGA
 ACCTGCCATA AACCACTAAG
 D
 TAAACTATTC ATGATAGTGT GGTAGACTGC AAATAAATGC TGTTGAAATG AGTTAGGCTT
 GGGTTTCATC TTGGCTGTAT CATTTACTAG CTATGTTTTC ACTGGTATCT TACTTAACTT
 AGCCTCACAT TACTCATGAA AATACTGGTG TTAATTTTTA CTACATTGAA TTAATATCAG
 AATTAAAAGG AAAACGCAAG CAAAGTAATT AGATACATGC TTAGTGATAA TAAAATATTG
 CAAAAAATTA TACATTCTGT TGTTTTTCTC AAAATTTCTA TAGAGTGATG ATAAAAATCT
 AAGAGAAGCT AAACAAAACA AGGATAAACC AAAGCATCAT GACCTTCTAA GCCTTACTAA
 TAAATAAGAA GTTTCTCGGC TGGGCACGGT GGCTCACGCC TGTAATCCAG CACTTTGGGA
 GGCCGAGGTG GGCGGATCAC AAGGTCAGGA AATCAAGACC ATCCTGGCCA ACATGGTGAA
 ACCCCATCTC TACTAAAAAT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000006.6 ABBA01038112 Z84814
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss116397210YRI 2IG1.00000000 1.00000000
ss12693608HapMap-CEUEuropean 226IG0.663716790.292035400.044247790.583882000.809734520.19026549
HapMap-HCBAsian 86IG1.00000000 1.00000000
HapMap-JPTAsian 86IG1.00000000 1.00000000
HapMap-YRISub-Saharan African 226IG0.938053070.06194690 1.000000000.969026570.03097345
YRISub-Saharan African 120IG0.949999990.05000000 1.000000000.975000020.02500000
CHBAsian 90IG1.00000000 1.00000000
JPTAsian 86IG1.00000000 1.00000000
CEUEuropean 120IG0.566666660.366666670.066666671.000000000.750000000.25000000
HAPMAP-ASW 98IG0.918367330.08163265 1.000000000.959183690.04081633
HAPMAP-CHBAsian 82IG0.902439000.09756097 1.000000000.951219500.04878049
HAPMAP-CHD 170IG0.988235290.01176471 1.000000000.994117620.00588235
HAPMAP-GIH 176IG0.965909060.03409091 1.000000000.982954560.01704546
HAPMAP-LWK 180IG0.922222200.07777778 1.000000000.961111130.03888889
HAPMAP-MEX 100IG0.899999980.10000000 1.000000000.949999990.05000000
HAPMAP-MKK 286IG0.965034960.03496503 1.000000000.982517480.01748252
HAPMAP-TSI 176IG0.852272750.136363640.011363640.527089000.920454560.07954545
ss1319580158EAS 1008AF 0.994000020.00600000
EUR 1006AF 0.879700010.12029999
AFR 1322AF 0.972800020.02720000
AMR 694AF 0.946700040.05330000
SAS 978AF 0.982599970.01740000
ss143877012ENSEMBL_Venter 2IG1.00000000 1.00000000
ss162204379CEUEuropean 2IG1.00000000 1.00000000
ss163355740YRISub-Saharan African 2IG1.00000000 1.00000000
ss166443275PGP 2IG1.00000000 1.00000000
ss222307577pilot_1_YRI_low_coverage_panel 118AF 0.974576290.02542373
ss233402274pilot_1_CEU_low_coverage_panel 120AF 0.783333360.21666667
ss23716099AFD_EUR_PANELEuropean 48IG0.916666690.08333334 1.000000000.958333310.04166667
AFD_AFR_PANELAfrican American 46IG0.913043500.08695652 1.000000000.956521750.04347826
AFD_CHN_PANELAsian 48IG0.958333310.04166667 1.000000000.979166690.02083333
ss240473127pilot_1_CHB+JPT_low_coverage_panel 120AF 1.00000000
ss65845328KHP1 180AF1.00000000 1.00000000
ss98380622J. Craig Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.083+/-0.1860000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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