Name: rs2825544
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2825544

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr21:19368235 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: T>A / T>C
Variation Type: SNV Single Nucleotide Variation
Frequency: C=0.337939 (89449/264690, TOPMED)
C=0.332901 (64238/192964, ALFA)
C=0.331804 (46430/139932, GnomAD) (+ 19 more)
C=0.38814 (10968/28258, 14KJPN)
C=0.38878 (6516/16760, 8.3KJPN)
C=0.3488 (2234/6404, 1000G_30x)
C=0.3502 (1754/5008, 1000G)
C=0.3737 (1674/4480, Estonian)
C=0.3399 (1310/3854, ALSPAC)
C=0.3304 (1225/3708, TWINSUK)
C=0.3765 (1103/2930, KOREAN)
C=0.2956 (616/2084, HGDP_Stanford)
C=0.3782 (714/1888, HapMap)
C=0.368 (367/998, GoNL)
C=0.390 (308/790, PRJEB37584)
C=0.332 (199/600, NorthernSweden)
T=0.394 (112/284, SGDP_PRJ)
C=0.319 (69/216, Qatari)
C=0.335 (71/212, Vietnamese)
C=0.28 (11/40, GENOME_DK)
T=0.38 (6/16, Siberian)
C=0.2 (2/10, Ancient Sardinia)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: None
Publications: 1 citation
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	192964	T=0.667099	C=0.332901
European	Sub	166680	T=0.667495	C=0.332505
African	Sub	6744	T=0.6799	C=0.3201
African Others	Sub	256	T=0.711	C=0.289
African American	Sub	6488	T=0.6786	C=0.3214
Asian	Sub	414	T=0.577	C=0.423
East Asian	Sub	300	T=0.577	C=0.423
Other Asian	Sub	114	T=0.579	C=0.421
Latin American 1	Sub	810	T=0.651	C=0.349
Latin American 2	Sub	6612	T=0.6783	C=0.3217
South Asian	Sub	5024	T=0.6148	C=0.3852
Other	Sub	6680	T=0.6801	C=0.3199

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	T=0.662061	C=0.337939
Allele Frequency Aggregator	Total	Global	192964	T=0.667099	C=0.332901
Allele Frequency Aggregator	European	Sub	166680	T=0.667495	C=0.332505
Allele Frequency Aggregator	African	Sub	6744	T=0.6799	C=0.3201
Allele Frequency Aggregator	Other	Sub	6680	T=0.6801	C=0.3199
Allele Frequency Aggregator	Latin American 2	Sub	6612	T=0.6783	C=0.3217
Allele Frequency Aggregator	South Asian	Sub	5024	T=0.6148	C=0.3852
Allele Frequency Aggregator	Latin American 1	Sub	810	T=0.651	C=0.349
Allele Frequency Aggregator	Asian	Sub	414	T=0.577	C=0.423
gnomAD - Genomes	Global	Study-wide	139932	T=0.668196	C=0.331804
gnomAD - Genomes	European	Sub	75802	T=0.66964	C=0.33036
gnomAD - Genomes	African	Sub	41920	T=0.66837	C=0.33163
gnomAD - Genomes	American	Sub	13612	T=0.65868	C=0.34132
gnomAD - Genomes	Ashkenazi Jewish	Sub	3320	T=0.7117	C=0.2883
gnomAD - Genomes	East Asian	Sub	3126	T=0.6324	C=0.3676
gnomAD - Genomes	Other	Sub	2152	T=0.6589	C=0.3411
14KJPN	JAPANESE	Study-wide	28258	T=0.61186	C=0.38814
8.3KJPN	JAPANESE	Study-wide	16760	T=0.61122	C=0.38878
1000Genomes_30x	Global	Study-wide	6404	T=0.6512	C=0.3488
1000Genomes_30x	African	Sub	1786	T=0.6618	C=0.3382
1000Genomes_30x	Europe	Sub	1266	T=0.6777	C=0.3223
1000Genomes_30x	South Asian	Sub	1202	T=0.5923	C=0.4077
1000Genomes_30x	East Asian	Sub	1170	T=0.6436	C=0.3564
1000Genomes_30x	American	Sub	980	T=0.679	C=0.321
1000Genomes	Global	Study-wide	5008	T=0.6498	C=0.3502
1000Genomes	African	Sub	1322	T=0.6649	C=0.3351
1000Genomes	East Asian	Sub	1008	T=0.6438	C=0.3562
1000Genomes	Europe	Sub	1006	T=0.6750	C=0.3250
1000Genomes	South Asian	Sub	978	T=0.596	C=0.404
1000Genomes	American	Sub	694	T=0.669	C=0.331
Genetic variation in the Estonian population	Estonian	Study-wide	4480	T=0.6263	C=0.3737
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.6601	C=0.3399
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.6696	C=0.3304
KOREAN population from KRGDB	KOREAN	Study-wide	2930	T=0.6235	A=0.0000, C=0.3765
HGDP-CEPH-db Supplement 1	Global	Study-wide	2084	T=0.7044	C=0.2956
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	470	T=0.653	C=0.347
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	T=0.647	C=0.353
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	T=0.734	C=0.266
HGDP-CEPH-db Supplement 1	Europe	Sub	320	T=0.709	C=0.291
HGDP-CEPH-db Supplement 1	Africa	Sub	242	T=0.740	C=0.260
HGDP-CEPH-db Supplement 1	America	Sub	216	T=0.787	C=0.213
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	T=0.83	C=0.17
HapMap	Global	Study-wide	1888	T=0.6218	C=0.3782
HapMap	American	Sub	770	T=0.617	C=0.383
HapMap	African	Sub	690	T=0.625	C=0.375
HapMap	Asian	Sub	252	T=0.607	C=0.393
HapMap	Europe	Sub	176	T=0.653	C=0.347
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	T=0.632	C=0.368
CNV burdens in cranial meningiomas	Global	Study-wide	790	T=0.610	C=0.390
CNV burdens in cranial meningiomas	CRM	Sub	790	T=0.610	C=0.390
Northern Sweden	ACPOP	Study-wide	600	T=0.668	C=0.332
SGDP_PRJ	Global	Study-wide	284	T=0.394	C=0.606
Qatari	Global	Study-wide	216	T=0.681	C=0.319
A Vietnamese Genetic Variation Database	Global	Study-wide	212	T=0.665	C=0.335
The Danish reference pan genome	Danish	Study-wide	40	T=0.72	C=0.28
Siberian	Global	Study-wide	16	T=0.38	C=0.62
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	10	T=0.8	C=0.2

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 21	NC_000021.9:g.19368235T>A
GRCh38.p14 chr 21	NC_000021.9:g.19368235T>C
GRCh37.p13 chr 21	NC_000021.8:g.20740552T>A
GRCh37.p13 chr 21	NC_000021.8:g.20740552T>C

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	T=	A	C
GRCh38.p14 chr 21	NC_000021.9:g.19368235=	NC_000021.9:g.19368235T>A	NC_000021.9:g.19368235T>C
GRCh37.p13 chr 21	NC_000021.8:g.20740552=	NC_000021.8:g.20740552T>A	NC_000021.8:g.20740552T>C

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

120 SubSNP, 22 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	PERLEGEN	ss4001179	Sep 28, 2001 (100)
2	PERLEGEN	ss24206409	Sep 20, 2004 (123)
3	ABI	ss44282799	Mar 14, 2006 (126)
4	ILLUMINA	ss66614874	Nov 29, 2006 (127)
5	ILLUMINA	ss67275814	Nov 29, 2006 (127)
6	ILLUMINA	ss67677246	Nov 29, 2006 (127)
7	ILLUMINA	ss70754316	May 25, 2008 (130)
8	ILLUMINA	ss71327300	May 17, 2007 (127)
9	ILLUMINA	ss75434441	Dec 06, 2007 (129)
10	ILLUMINA	ss79148641	Dec 15, 2007 (130)
11	HGSV	ss80922397	Dec 15, 2007 (130)
12	KRIBB_YJKIM	ss84093730	Dec 15, 2007 (130)
13	HUMANGENOME_JCVI	ss96158121	Feb 05, 2009 (130)
14	1000GENOMES	ss112326923	Jan 25, 2009 (130)
15	ILLUMINA-UK	ss117466676	Feb 14, 2009 (130)
16	ILLUMINA	ss122114408	Dec 01, 2009 (131)
17	ENSEMBL	ss143098025	Dec 01, 2009 (131)
18	ILLUMINA	ss154237046	Dec 01, 2009 (131)
19	GMI	ss156730653	Dec 01, 2009 (131)
20	ILLUMINA	ss159413454	Dec 01, 2009 (131)
21	ILLUMINA	ss160583219	Dec 01, 2009 (131)
22	COMPLETE_GENOMICS	ss167736684	Jul 04, 2010 (132)
23	ILLUMINA	ss171401789	Jul 04, 2010 (132)
24	COMPLETE_GENOMICS	ss171863138	Jul 04, 2010 (132)
25	ILLUMINA	ss173477391	Jul 04, 2010 (132)
26	BUSHMAN	ss203969283	Jul 04, 2010 (132)
27	1000GENOMES	ss228480641	Jul 14, 2010 (132)
28	1000GENOMES	ss237922634	Jul 15, 2010 (132)
29	1000GENOMES	ss244073713	Jul 15, 2010 (132)
30	BL	ss255864251	May 09, 2011 (134)
31	GMI	ss283484142	May 04, 2012 (137)
32	GMI	ss287503024	Apr 25, 2013 (138)
33	PJP	ss292683165	May 09, 2011 (134)
34	ILLUMINA	ss480675950	May 04, 2012 (137)
35	ILLUMINA	ss480691450	May 04, 2012 (137)
36	ILLUMINA	ss481547063	Sep 08, 2015 (146)
37	ILLUMINA	ss485132841	May 04, 2012 (137)
38	ILLUMINA	ss537131155	Sep 08, 2015 (146)
39	TISHKOFF	ss566402558	Apr 25, 2013 (138)
40	SSMP	ss662309998	Apr 25, 2013 (138)
41	ILLUMINA	ss778507659	Aug 21, 2014 (142)
42	ILLUMINA	ss783012730	Aug 21, 2014 (142)
43	ILLUMINA	ss783972946	Aug 21, 2014 (142)
44	ILLUMINA	ss825479159	Apr 01, 2015 (144)
45	ILLUMINA	ss832270123	Apr 01, 2015 (144)
46	ILLUMINA	ss832925121	Aug 21, 2014 (142)
47	ILLUMINA	ss833515951	Aug 21, 2014 (142)
48	ILLUMINA	ss833963868	Aug 21, 2014 (142)
49	EVA-GONL	ss994969024	Aug 21, 2014 (142)
50	JMKIDD_LAB	ss1082380650	Aug 21, 2014 (142)
51	1000GENOMES	ss1365738271	Aug 21, 2014 (142)
52	DDI	ss1429138772	Apr 01, 2015 (144)
53	EVA_GENOME_DK	ss1579602283	Apr 01, 2015 (144)
54	EVA_UK10K_ALSPAC	ss1639268072	Apr 01, 2015 (144)
55	EVA_UK10K_TWINSUK	ss1682262105	Apr 01, 2015 (144)
56	EVA_DECODE	ss1699032723	Apr 01, 2015 (144)
57	EVA_SVP	ss1713712390	Apr 01, 2015 (144)
58	ILLUMINA	ss1752401571	Sep 08, 2015 (146)
59	WEILL_CORNELL_DGM	ss1938521337	Feb 12, 2016 (147)
60	GENOMED	ss1969187325	Jul 19, 2016 (147)
61	JJLAB	ss2030029655	Sep 14, 2016 (149)
62	USC_VALOUEV	ss2158629905	Dec 20, 2016 (150)
63	HUMAN_LONGEVITY	ss2244657572	Dec 20, 2016 (150)
64	SYSTEMSBIOZJU	ss2629511895	Nov 08, 2017 (151)
65	ILLUMINA	ss2633830996	Nov 08, 2017 (151)
66	ILLUMINA	ss2635108291	Nov 08, 2017 (151)
67	GRF	ss2704354783	Nov 08, 2017 (151)
68	GNOMAD	ss2970274706	Nov 08, 2017 (151)
69	SWEGEN	ss3018667751	Nov 08, 2017 (151)
70	BIOINF_KMB_FNS_UNIBA	ss3028850012	Nov 08, 2017 (151)
71	CSHL	ss3352651116	Nov 08, 2017 (151)
72	ILLUMINA	ss3628449081	Oct 12, 2018 (152)
73	ILLUMINA	ss3631785320	Oct 12, 2018 (152)
74	ILLUMINA	ss3633259975	Oct 12, 2018 (152)
75	ILLUMINA	ss3633974718	Oct 12, 2018 (152)
76	ILLUMINA	ss3634848416	Oct 12, 2018 (152)
77	ILLUMINA	ss3635659571	Oct 12, 2018 (152)
78	ILLUMINA	ss3636543587	Oct 12, 2018 (152)
79	ILLUMINA	ss3637411724	Oct 12, 2018 (152)
80	ILLUMINA	ss3638360228	Oct 12, 2018 (152)
81	ILLUMINA	ss3639183550	Oct 12, 2018 (152)
82	ILLUMINA	ss3639606618	Oct 12, 2018 (152)
83	ILLUMINA	ss3640555714	Oct 12, 2018 (152)
84	ILLUMINA	ss3643321957	Oct 12, 2018 (152)
85	URBANLAB	ss3651083354	Oct 12, 2018 (152)
86	EGCUT_WGS	ss3685241105	Jul 13, 2019 (153)
87	EVA_DECODE	ss3707455441	Jul 13, 2019 (153)
88	ACPOP	ss3743605382	Jul 13, 2019 (153)
89	ILLUMINA	ss3745148298	Jul 13, 2019 (153)
90	EVA	ss3758938502	Jul 13, 2019 (153)
91	ILLUMINA	ss3772644386	Jul 13, 2019 (153)
92	PACBIO	ss3788721655	Jul 13, 2019 (153)
93	PACBIO	ss3793601186	Jul 13, 2019 (153)
94	PACBIO	ss3798487297	Jul 13, 2019 (153)
95	KHV_HUMAN_GENOMES	ss3822099082	Jul 13, 2019 (153)
96	EVA	ss3835796279	Apr 27, 2020 (154)
97	EVA	ss3841525351	Apr 27, 2020 (154)
98	EVA	ss3847038548	Apr 27, 2020 (154)
99	HGDP	ss3847675895	Apr 27, 2020 (154)
100	SGDP_PRJ	ss3889709401	Apr 27, 2020 (154)
101	KRGDB	ss3940073688	Apr 27, 2020 (154)
102	EVA	ss3984753997	Apr 26, 2021 (155)
103	EVA	ss3985894734	Apr 26, 2021 (155)
104	EVA	ss4017860775	Apr 26, 2021 (155)
105	TOPMED	ss5096861229	Apr 26, 2021 (155)
106	TOMMO_GENOMICS	ss5230921560	Apr 26, 2021 (155)
107	1000G_HIGH_COVERAGE	ss5309734627	Oct 13, 2022 (156)
108	EVA	ss5316027084	Oct 13, 2022 (156)
109	EVA	ss5439019698	Oct 13, 2022 (156)
110	HUGCELL_USP	ss5501824226	Oct 13, 2022 (156)
111	1000G_HIGH_COVERAGE	ss5616640081	Oct 13, 2022 (156)
112	SANFORD_IMAGENETICS	ss5624492628	Oct 13, 2022 (156)
113	SANFORD_IMAGENETICS	ss5663728770	Oct 13, 2022 (156)
114	TOMMO_GENOMICS	ss5791266708	Oct 13, 2022 (156)
115	EVA	ss5800029551	Oct 13, 2022 (156)
116	YY_MCH	ss5818323614	Oct 13, 2022 (156)
117	EVA	ss5838850852	Oct 13, 2022 (156)
118	EVA	ss5853240563	Oct 13, 2022 (156)
119	EVA	ss5891799911	Oct 13, 2022 (156)
120	EVA	ss5958615299	Oct 13, 2022 (156)
121	1000Genomes	NC_000021.8 - 20740552	Oct 12, 2018 (152)
122	1000Genomes_30x	NC_000021.9 - 19368235	Oct 13, 2022 (156)
123	The Avon Longitudinal Study of Parents and Children	NC_000021.8 - 20740552	Oct 12, 2018 (152)
124	Genetic variation in the Estonian population	NC_000021.8 - 20740552	Oct 12, 2018 (152)
125	The Danish reference pan genome	NC_000021.8 - 20740552	Apr 27, 2020 (154)
126	gnomAD - Genomes	NC_000021.9 - 19368235	Apr 26, 2021 (155)
127	Genome of the Netherlands Release 5	NC_000021.8 - 20740552	Apr 27, 2020 (154)
128	HGDP-CEPH-db Supplement 1	NC_000021.7 - 19662423	Apr 27, 2020 (154)
129	HapMap	NC_000021.9 - 19368235	Apr 27, 2020 (154)
130	KOREAN population from KRGDB	NC_000021.8 - 20740552	Apr 27, 2020 (154)
131	Northern Sweden	NC_000021.8 - 20740552	Jul 13, 2019 (153)
132	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000021.8 - 20740552	Apr 26, 2021 (155)
133	CNV burdens in cranial meningiomas	NC_000021.8 - 20740552	Apr 26, 2021 (155)
134	Qatari	NC_000021.8 - 20740552	Apr 27, 2020 (154)
135	SGDP_PRJ	NC_000021.8 - 20740552	Apr 27, 2020 (154)
136	Siberian	NC_000021.8 - 20740552	Apr 27, 2020 (154)
137	8.3KJPN	NC_000021.8 - 20740552	Apr 26, 2021 (155)
138	14KJPN	NC_000021.9 - 19368235	Oct 13, 2022 (156)
139	TopMed	NC_000021.9 - 19368235	Apr 26, 2021 (155)
140	UK 10K study - Twins	NC_000021.8 - 20740552	Oct 12, 2018 (152)
141	A Vietnamese Genetic Variation Database	NC_000021.8 - 20740552	Jul 13, 2019 (153)
142	ALFA	NC_000021.9 - 19368235	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs17180571	Oct 07, 2004 (123)
rs59876894	May 25, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
47251082, ss3940073688	NC_000021.8:20740551:T:A	NC_000021.9:19368234:T:A	(self)
353787, ss80922397, ss112326923, ss117466676, ss160583219, ss167736684, ss171863138, ss203969283, ss255864251, ss283484142, ss287503024, ss292683165, ss480675950, ss825479159, ss1699032723, ss1713712390, ss2635108291, ss3639183550, ss3639606618, ss3643321957, ss3847675895	NC_000021.7:19662422:T:C	NC_000021.9:19368234:T:C	(self)
79235427, 43844430, 30979353, 5767222, 19530719, 47251082, 16890247, 1120661, 303573, 20563259, 41726381, 11146259, 88890867, 43844430, 9670137, ss228480641, ss237922634, ss244073713, ss480691450, ss481547063, ss485132841, ss537131155, ss566402558, ss662309998, ss778507659, ss783012730, ss783972946, ss832270123, ss832925121, ss833515951, ss833963868, ss994969024, ss1082380650, ss1365738271, ss1429138772, ss1579602283, ss1639268072, ss1682262105, ss1752401571, ss1938521337, ss1969187325, ss2030029655, ss2158629905, ss2629511895, ss2633830996, ss2704354783, ss2970274706, ss3018667751, ss3352651116, ss3628449081, ss3631785320, ss3633259975, ss3633974718, ss3634848416, ss3635659571, ss3636543587, ss3637411724, ss3638360228, ss3640555714, ss3685241105, ss3743605382, ss3745148298, ss3758938502, ss3772644386, ss3788721655, ss3793601186, ss3798487297, ss3835796279, ss3841525351, ss3889709401, ss3940073688, ss3984753997, ss3985894734, ss4017860775, ss5230921560, ss5316027084, ss5439019698, ss5624492628, ss5663728770, ss5800029551, ss5838850852, ss5958615299	NC_000021.8:20740551:T:C	NC_000021.9:19368234:T:C	(self)
104166016, 559323029, 2180344, 125103812, 371970175, 15450903134, ss2244657572, ss3028850012, ss3651083354, ss3707455441, ss3822099082, ss3847038548, ss5096861229, ss5309734627, ss5501824226, ss5616640081, ss5791266708, ss5818323614, ss5853240563, ss5891799911	NC_000021.9:19368234:T:C	NC_000021.9:19368234:T:C	(self)
ss4001179, ss24206409, ss44282799, ss66614874, ss67275814, ss67677246, ss70754316, ss71327300, ss75434441, ss79148641, ss84093730, ss96158121, ss122114408, ss143098025, ss154237046, ss156730653, ss159413454, ss171401789, ss173477391	NT_011512.11:6402422:T:C	NC_000021.9:19368234:T:C	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs2825544

PMID	Title	Author	Year	Journal
20460622	Genome-wide analysis of genetic loci associated with Alzheimer disease.	Seshadri S et al.	2010	JAMA

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs2825544