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Reference SNP (refSNP) Cluster Report: rs2187668                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:96/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (REV)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.0777/389 (1000 Genomes)
T=0.0621/7801 (TOPMED)
HGVS Names
  • CM000668.2:g.32638107C>T
  • NC_000006.11:g.32605884C>T
  • NC_000006.12:g.32638107C>T
  • NG_032876.1:g.5702C>T
  • NM_002122.3:c.82+567C>T
  • NT_113891.2:g.4056277T=
  • NT_113891.2:g.4056277T>C
  • NT_113891.3:g.4056171T=
  • NT_113891.3:g.4056171T>C
  • NT_167245.2:g.3882026C>T
  • NT_167246.2:g.4056424C>T
  • NT_167247.2:g.3939169C>T
  • NT_167248.1:g.3842736T=
  • NT_167248.1:g.3842736T>C
  • NT_167248.2:g.3837140T=
  • NT_167248.2:g.3837140T>C
  • NT_167249.2:g.4040038C>T
  • XR_001744085.1:n.2461G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss278738717 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2187668 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3126485TSC-CSHL|TSC1238179fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa06/07/0110/10/0396Genomicunknown
ss5230665TSC-CSHL|TSC1238432fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa09/20/0210/25/06110Genomicunknown
ss12697448SI_MHC_SNP|AL662789.11_50001_CTbyFreqrev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct09/10/0310/25/06123Genomicunknown
ss13097238SC_SNP|NT_007592.13_23407319rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct10/22/0310/31/03119Genomicunknown
ss43496494ABI|hCV15847249rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct07/18/0507/18/05130Genomicunknown
ss50398153UWGC|HLA-73970byFreqfwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa02/02/0611/03/06126Genomicunknown
ss65843991KRIBB_YJKIM|KHS19787byFreqfwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa10/17/0612/16/06127Genomicunknown
ss66611730ILLUMINA|HumanHap300v1.1_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa11/09/0611/09/06127Genomicunknown
ss67231915ILLUMINA|HumanHap550v1.1_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa11/14/0611/14/06127Genomicunknown
ss67627531ILLUMINA|HumanHap650Yv1.0_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa11/14/0611/14/06127Genomicunknown
ss70710240ILLUMINA|HumanHap550v3.0__rs2187668rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct04/20/0703/30/08130Genomicunknown
ss71277445ILLUMINA|HumanHap650Yv3.0_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa04/23/0704/23/07127Genomicunknown
ss75448657ILLUMINA|ILMN_Human_1M_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa08/28/0708/29/07129Genomicunknown
ss76612088AFFY|AFFY_6_1M_SNP_A-8473192fwd/TA/Gaggcagctgagagtaatgaggaccatgtggta08/28/0708/30/07130Genomicunknown
ss79119186ILLUMINA|HumanHap300v2.0_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa04/18/0711/18/07130Genomicunknown
ss83991908KRIBB_YJKIM|KHS594977fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa12/04/0712/06/07130Genomicunknown
ss104299528BGI|BGI_rs2187668rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct06/08/0806/18/09130Genomicunknown
ss1099173251000GENOMES|CEU.trio.12.15.2008_1491208_chr6_32713862rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct12/16/0812/16/08137Genomicunknown
ss121942437ILLUMINA|HumanCNV370v1_C_rs2187668fwd/TA/Gaggtgacacatatgaggcagctgagagtaatgaggaccatgtggtaaaatgattgttgaa04/14/0904/14/09136Genomicunknown
ss153876705ILLUMINA|Human610_Quadv1_B_rs2187668-128_B_R_1501712580rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct06/18/0906/20/09136Genomicunknown
ss156764850GMI|GMI_SNP_77005694rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct06/24/0906/25/09136Genomicunknown
ss159366307ILLUMINA|Human660W-Quad_v1_A_rs2187668-128_B_R_1501712580rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct07/06/0907/07/09136Genomicunknown
ss160512196ILLUMINA|HumanOmni1-Quad_v1-0_B_rs2187668-128_B_R_1501712580rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct08/04/0910/02/09136Genomicunknown
ss171074922ILLUMINA|HumanCNV370-Quadv3_C_rs2187668-128_B_R_1501712580rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct10/01/0910/03/09136Genomicunknown
ss173166976ILLUMINA|Human1M-Duov3_B_rs2187668-128_B_R_1501712580rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct10/01/0910/03/09136Genomicunknown
ss2223149601000GENOMES|pilot_1_YRI_4124643_chr6_32713862rev/C/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct04/22/1004/22/10137Genomicunknown
ss2334121191000GENOMES|pilot_1_CEU_3016748_chr6_32713862rev/C/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct05/01/1005/01/10137Genomicunknown
ss2404797141000GENOMES|pilot_1_CHB+JPT_2364791_chr6_32713862rev/C/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct05/01/1005/01/10137Genomicunknown
ss254209767BL|SNP47926_6_32713862rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct08/19/1008/19/10137Genomicunknown
ss278738717GMI|GMI_AK_SNP_3058958rev/C/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct12/16/1012/16/10137Genomicunknown
ss410920223ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs2187668rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct06/07/1106/07/11137Genomicunknown
ss480455715ILLUMINA|HumanOmni2.5-4v1_B_rs2187668-128_B_R_1615265327rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt01/30/1210/28/16137Genomicunknown
ss480469811ILLUMINA|HumanOmniExpress-12v1_C_rs2187668-131_B_R_1853420539rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt01/30/1210/27/16137Genomicunknown
ss481263106ILLUMINA|HumanOmni1-Quad_v1-0_C_rs2187668-131_B_R_1865747352rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt01/30/1208/28/15146Genomicunknown
ss485025346ILLUMINA|HumanOmni2.5-4v1_D_rs2187668-131_B_R_1853420539rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt01/30/1210/28/16137Genomicunknown
ss491383410EXOME_CHIP|.GWAS._99636_chr_6_32605884rev/BC/Tttcaacaatcattttaccacatggtcctcattactctcagctgcctcatatgtgtcacct03/05/1203/05/12137Genomicunknown
ss536213535ILLUMINA|HumanOmni5-4v1_B_kgp8058764-0_B_F_1805777040rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt06/22/1208/29/15146Genomicunknown
ss653049081SSMP|6_32605884rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt12/14/1202/11/15138Genomicunknown
ss780673042ILLUMINA|HumanOmni25Exome-8v1_A_rs2187668-131_T_F_1895176957rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/30/1307/09/15146Genomicunknown
ss780683063ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs2187668-131_B_R_1990480900rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/30/1307/09/15146Genomicunknown
ss782958956ILLUMINA|HumanOmni2.5-4v1_H_rs2187668-131_B_R_1853420539rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/30/1307/28/15142Genomicunknown
ss783356441ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs2187668-131_B_R_1990480900rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/31/1306/19/15146Genomicunknown
ss783921073ILLUMINA|HumanOmniExpressExome-8v1_A_rs2187668-131_T_F_1895176957rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/31/1306/19/15146Genomicunknown
ss825449704ILLUMINA|HumanCNV370v1_C_rs2187668-126_B_R_IFB1135333584:0rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt06/24/1311/21/14144Genomicunknown
ss832215106ILLUMINA|HumanOmniExpress-12v1_H_rs2187668-131_B_R_1853420539rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/17/1306/19/15144Genomicunknown
ss832878161ILLUMINA|Human660W-Quad_v1_C_rs2187668-131_B_R_1853420539rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/18/1307/02/15142Genomicunknown
ss833468991ILLUMINA|Human660W-Quad_v1_H_rs2187668-131_B_R_1853420539rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/18/1307/02/15142Genomicunknown
ss836169180ILLUMINA|HumanOmni2.5-8v1_A_rs2187668-131_T_F_1895176957rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/18/1307/28/15146Genomicunknown
ss982782709EVA-GONL|EVA-GONL_rs2187668rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt04/23/1404/24/14142Genomicunknown
ss1073511890JMKIDD_LAB|HGDP_WGS_chr6_32605884rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt07/10/1407/11/14142Genomicunknown
ss13195926751000GENOMES|PHASE3_V1_31526683rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt08/16/1408/16/14142Genomicunknown
ss1397451269HAMMER_LAB|HAMMER_LAB_rs2187668rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/30/1409/30/14146Genomicunknown
ss1581613340EVA_GENOME_DK|EVA_GENOME_DK_snv_rs2187668rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt02/19/1502/20/15144Genomicunknown
ss1615291292EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_6_32605884_17482667rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt03/04/1503/04/15144Genomicunknown
ss1658285325EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_6_32605884_17482667rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt03/04/1503/04/15144Genomicunknown
ss1712852396EVA_SVP|EVA_SVP_546763rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt03/12/1503/12/15144Genomicunknown
ss1752631061ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs2187668-131_B_R_1990480900rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/27/1506/09/15146Genomicunknown
ss1752631062ILLUMINA|OmniExpressExome-8v1-1_B_rs2187668-131_B_R_1893931048rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/27/1506/09/15146Genomicunknown
ss1917803484ILLUMINA|HumanExome-12v1-1_B_exm-rs2187668-131_B_R_1990480900rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt10/16/1510/16/15147Genomicunknown
ss1926039351WEILL_CORNELL_DGM|SNV:chr6:32605884rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt10/16/1510/17/15147Genomicunknown
ss1946174639ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs2187668-131_B_R_1990480900rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt10/29/1510/29/15147Genomicunknown
ss1958893877ILLUMINA|exm-rs2187668-131_B_R_1990480900rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt11/13/1511/13/15147Genomicunknown
ss2023653409JJLAB|SNP4155964rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt08/29/1608/30/16149Genomicunknown
ss2094826151ILLUMINA|Immuno_BeadChip_11419691_B_rs2187668-131_B_R_1865747352rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/27/1609/27/16150Genomicunknown
ss2095179836ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs2187668-131_B_R_1865747352rev/BC/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt09/27/1609/27/16150Genomicunknown
ss2151828084USC_VALOUEV|NC_000006.11:g.32605884C>Trev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt11/17/1611/17/16150Genomicunknown
ss2451369049TOPMED|6_32605884_C/Trev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt11/20/1611/20/16150Genomicunknown
ss2634433155ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs2187668-131_B_R_2131rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt02/02/1702/02/17151Genomicunknown
ss2634433156ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs2187668-131_B_R_18939310rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt02/02/1702/02/17151Genomicunknown
ss2634433157ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs2187668-131_B_R_2130rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt02/02/1702/02/17151Genomicunknown
ss2707422511GRF|rs2187668rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt02/13/1702/13/17151Genomicunknown
ss2711072050ILLUMINA|Consortium-OncoArray_15047405_A_rs2187668-131_B_R_2022697584rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt03/22/1703/22/17151Genomicunknown
ss2985363749AFFY|Axiom_PsorMich_Affx-28494466rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/24/1705/24/17151Genomicunknown
ss2985996100AFFY|Axiom_Smokesc1_Affx-28494466rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/24/1705/24/17151Genomicunknown
ss2998834526SWEGEN|NC_000006.11:g.32605884C>Trev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt05/30/1705/30/17151Genomicunknown
ss3022604706ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs2187668-131_B_R_1990480900rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt06/28/1706/28/17151Genomicunknown
ss3025616783BIOINF_KMB_FNS_UNIBA|6.32638107C>Trev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt07/05/1707/05/17151Genomicunknown
ss3494036154TOPMED|TOPMed_freeze_5?chr6:32,638,107rev/C/Tcaatcattttaccacatggtcctcattactctcagctgcctcatatgtgt10/05/1710/05/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2187668|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CCTCATGGAC TCAAGTGGTC CTCCCACGGC AGCCTTCTGA GTAGCTGGCA CCACAGGCAC
 ACACCACCAT GCCTGGCTAA TTTTTATTTT TCTTTTTTTG TAGAGATGAG GTCTTGCTAT
 GTTGCCCAGG CTGGTCTCAA GCTCCCAGGC TCAAATGATC CTCCTGCCTC GGCCTCCCAA
 AGTGCTGGGA TTACAGGCAT GAGCCACCTT GTCTGGCCCA CTTTTCTTTT TATAGGACTT
 TATTAGATGA GGTGAAGAAC AGGTAATTTG GGTTGATAAT TTGAGAATAA AATGATTTAT
 TTTACCAATT TTTTCTACTT CTCAATTTTA AAATAAAATG ATCCCTTATT TTGCTAAAGA
 AAAGAAATGT GAAGCTATAT CTGTAATAGA AATATGTAAA AAAAATTGAC ATTCATGTTT
 TCACTATTTA CAAAGCTTAG CCACATGCCC ATTTTATTTG ATTACTTGTG AGGTGACACA
 TATGAGGCAG CTGAGAGTAA
 R
 TGAGGACCAT GTGGTAAAAT GATTGTTGAA GGCATTCAGC CTGCTGGACT CCTTTACCCA
 CTCCCCACCT GTGCCAGTTC CCATGTGGAA ATGTGAGTAA GTCTGAGAGA AAGAAACGGG
 CAACATTTTA AATATCTATA GAGTACATAA TTGATGGAAT GACCCCAAGA TCTACCACCG
 GAGACATCCG AAAAGCTTCA AAAGTTGTTC AGGGAAATTT GAGAATGACA CTTCATAAAT
 TTTTAATAAT AAAAAATTAT CCACTGATGG AAACCTCACT AATTTTTGAG GCAATCATGA
 TGGAACGACA TAGAGACCTC CAGGCCGTAG TCACTGAATA TAATATAAAC AGAATAGCGT
 CCTTAGTGAA CACAACAGCA TAGATAACAA AAAGAGTAGG TTGGGGCTCT GGTTTCCTGA
 AGGAGGAACA GCTATAATTT TTAATTGTCT TAATACTGAA AGGGCCCTTA GGAAATCTCT
 ACAGTTTCTC TGCAAATCGC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007592
dbSNP Blast Analysis
UniGene Cluster ID
550475

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs2187668 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss12697448HapMap-CEUEuropean 226IG 0.159292040.840707960.751830000.079646020.92035401
HapMap-HCBAsian 86IG 0.139534890.860465111.000000000.069767450.93023258
HapMap-JPTAsian 172IG 0.058139540.941860441.000000000.029069770.97093022
HapMap-YRISub-Saharan African 226IG0.008849560.150442480.840707961.000000000.084070790.91592920
YRISub-Saharan African 114IG 0.157894730.842105271.000000000.078947370.92105263
CHBAsian 90IG 0.133333340.866666671.000000000.066666670.93333334
JPTAsian 88IG 0.045454550.954545441.000000000.022727270.97727275
CEUEuropean 120IG 0.183333340.816666660.751830000.091666670.90833336
HAPMAP-ASW 98IG0.020408160.061224490.918367330.020022000.051020410.94897962
HAPMAP-CHBAsian 82IG 0.219512190.780487780.751830000.109756100.89024389
HAPMAP-CHD 170IG 0.105882350.894117651.000000000.052941180.94705880
HAPMAP-GIH 176IG0.011363640.181818190.806818191.000000000.102272730.89772725
HAPMAP-LWK 178IG 0.112359550.887640481.000000000.056179780.94382024
HAPMAP-MEX 100IG0.060000000.319999990.620000000.654721000.220000000.77999997
HAPMAP-MKK 286IG0.006993010.188811180.804195820.751830000.101398600.89860141
HAPMAP-TSI 176IG0.011363640.204545450.784090941.000000000.113636370.88636363
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1319592675EAS 1008AF 0.051600000.94839996
EUR 1006AF 0.106400000.89359999
AFR 1322AF 0.053700000.94629997
AMR 694AF 0.118200000.88180000
SAS 978AF 0.078700000.92129999
ss222314960pilot_1_YRI_low_coverage_panel 118AF 0.076271180.92372882
ss233412119pilot_1_CEU_low_coverage_panel 120AF 0.100000000.89999998
ss240479714pilot_1_CHB+JPT_low_coverage_panel 120AF 0.058333330.94166666
ss50398153HLA_PANELmultiple 18IG 0.222222220.77777779 0.111111110.88888890
ss65843991KHP1 178AF 0.078651690.921348330.751830000.039325840.96067417

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.143+/-0.2260000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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