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Reference SNP (refSNP) Cluster Report: rs2031920                 ** With other allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:94/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association: PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:C:germline
T:germline
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:With other allele [ClinVar]
MAF/MinorAlleleCount:T=0.0671/336 (1000 Genomes)
T=0.0405/5083 (TOPMED)
HGVS Names
  • CM000672.2:g.133526341C>T
  • NC_000010.10:g.135339845C>T
  • NC_000010.11:g.133526341C>T
  • NG_008383.1:g.3979C>T
  • NG_055447.1:g.2791C>T
  • NM_000773.3:c.-1055C>T
  • XR_001747676.1:n.1017G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss280844096 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2031920 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2940808TSC-CSHL|TSC1103219byFreqfwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct01/26/0104/07/0494Genomicunknown
ss5000279YUSUKE|IMS-JST174069fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct08/12/0210/10/03108Genomicunknown
ss5586445SNP500CANCER|CYP2E1-08byFreqfwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaactyct09/26/0204/07/04116Genomicunknown
ss6312565KIDDLAB|SI000694TbyFreqfwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct01/17/0310/10/03111Genomicunknown
ss16499407CSHL-HAPMAP|CSHL-HuAA-200402.chr10.NT_017795.16_495424fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct02/17/0403/04/04120Genomicunknown
ss24093297PERLEGEN|afd4116570byFreqfwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct08/10/0409/13/04123Genomicunknown
ss39766726ABI|hCV2431874rev/TA/Gagaagttcttaattcataggttgcaatttttacttttatattaacaatgaatctttatgt07/16/0507/16/05126Genomicunknown
ss65927521AFFY|SNP_A-1745906fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa10/26/0610/26/06127Genomicunknown
ss75260212ILLUMINA|ILMN_Human_1M_rs2031920fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct08/28/0708/29/07129Genomicunknown
ss97699210HUMANGENOME_JCVI|1103694101434fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaactcct03/29/0803/30/08130Genomicunknown
ss102929655BGI|BGI_rs2031920fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaactyct06/05/0810/20/09131Genomicunknown
ss1098963271000GENOMES|CEU.trio.12.15.2008_2466966_chr10_135189835fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct12/16/0812/16/08130Genomicunknown
ss119412915KRIBB_YJKIM|KHS1575162fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct02/04/0902/04/09131Genomicunknown
ss138752734ENSEMBL|ENSSNP350338fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct12/08/0810/16/09131Genomicunknown
ss153823033ILLUMINA|Human610_Quadv1_B_rs2031920-128_T_R_1514209276rev/TA/Gagaagttcttaattcataggttgcaatttttacttttatattaacaatgaatctttatgt06/18/0906/20/09131Genomicunknown
ss155789334GMI|GMI_SNP_122308310fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct06/24/0906/24/09131Genomicunknown
ss159350813ILLUMINA|Human660W-Quad_v1_A_rs2031920-128_T_R_1514209276rev/TA/Gagaagttcttaattcataggttgcaatttttacttttatattaacaatgaatctttatgt07/06/0907/07/09131Genomicunknown
ss160491054ILLUMINA|HumanOmni1-Quad_v1-0_B_rs2031920-128_T_R_1514209276rev/TA/Gagaagttcttaattcataggttgcaatttttacttttatattaacaatgaatctttatgt08/04/0910/02/09131Genomicunknown
ss173056145ILLUMINA|Human1M-Duov3_B_rs2031920-128_T_R_1514209276rev/TA/Gagaagttcttaattcataggttgcaatttttacttttatattaacaatgaatctttatgt10/01/0910/02/09132Genomicunknown
ss2354078531000GENOMES|pilot_1_CEU_5012482_chr10_135189835fwd/C/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct05/01/1005/01/10132Genomicunknown
ss2420703111000GENOMES|pilot_1_CHB+JPT_3955388_chr10_135189835fwd/C/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct05/01/1005/01/10132Genomicunknown
ss280844096GMI|GMI_AK_SNP_5164433fwd/C/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct12/16/1012/16/10137Genomicunknown
ss290971414PJP|SNP_477772_chr10_135189835fwd/C/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct01/21/1101/21/11134Genomicunknown
ss480388758ILLUMINA|HumanOmni2.5-4v1_B_rs2031920-128_T_R_1735659248fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa01/30/1210/28/16137Genomicunknown
ss480401653ILLUMINA|HumanOmniExpress-12v1_C_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa01/30/1210/27/16137Genomicunknown
ss481179564ILLUMINA|HumanOmni1-Quad_v1-0_C_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa01/30/1208/28/15146Genomicunknown
ss484992004ILLUMINA|HumanOmni2.5-4v1_D_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa01/30/1210/27/16137Genomicunknown
ss537025731ILLUMINA|HumanOmni5-4v1_B_rs2031920-131_T_R_1889936528fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa06/22/1208/29/15146Genomicunknown
ss657634152SSMP|10_135339845fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa12/14/1202/12/15138Genomicunknown
ss778698451ILLUMINA|HumanOmni25Exome-8v1_A_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa05/30/1307/10/15146Genomicunknown
ss782942301ILLUMINA|HumanOmni2.5-4v1_H_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa05/30/1307/29/15146Genomicunknown
ss783904856ILLUMINA|HumanOmniExpressExome-8v1_A_rs2031920-131_T_R_1889936528fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa05/31/1306/18/15146Genomicunknown
ss832197982ILLUMINA|HumanOmniExpress-12v1_H_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa09/17/1306/18/15146Genomicunknown
ss834157325ILLUMINA|HumanOmni2.5-8v1_A_rs2031920-131_T_R_1858160177fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa09/18/1307/29/15146Genomicunknown
ss988110210EVA-GONL|EVA-GONL_rs2031920fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa04/23/1404/25/14142Genomicunknown
ss1077434941JMKIDD_LAB|HGDP_WGS_chr10_135339845fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa07/10/1407/12/14142Genomicunknown
ss13397592621000GENOMES|PHASE3_V1_52507263fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa08/16/1408/16/14142Genomicunknown
ss1505810971OMIM-CURATED-RECORDS|SCV000038665.136524fwd/BC/Tacataaagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaacttct12/08/1412/08/14142Genomicunknown
ss1575464142EVA_GENOME_DK|EVA_GENOME_DK_snv_rs2031920fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa02/19/1502/19/15144Genomicunknown
ss1597789165EVA_DECODE|EVA_DECODE_10_135189835_1045166_rs2031920fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa03/02/1503/04/15144Genomicunknown
ss1625812973EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_10_135339845_29021965fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa03/04/1503/04/15144Genomicunknown
ss1668807006EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_10_135339845_29021965fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa03/04/1503/04/15144Genomicunknown
ss1713226188EVA_SVP|EVA_SVP_920555fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa03/12/1503/12/15144Genomicunknown
ss1751957703ILLUMINA|OmniExpressExome-8v1-1_B_rs2031920-131_T_R_1889936528fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa05/27/1506/09/15146Genomicunknown
ss1931468850WEILL_CORNELL_DGM|SNV:chr10:135339845fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa10/16/1510/17/15147Genomicunknown
ss1959312183ILLUMINA|10:135339845-C-T-0_T_R_2304242158fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa11/13/1511/13/15147Genomicunknown
ss1967268982GENOMED|rs2031920fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa02/16/1602/16/16147Genomicunknown
ss2026475044JJLAB|SNP6977599fwd/BC/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa08/29/1608/30/16149Genomicunknown
ss2154758232USC_VALOUEV|NC_000010.10:g.135339845C>Tfwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa11/17/1611/17/16150Genomicunknown
ss2179510498HUMAN_LONGEVITY|HLI-10-133526341-C-Tfwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa11/18/1611/18/16150Genomicunknown
ss2342623552TOPMED|10_135339845_C/Tfwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa11/19/1611/19/16150Genomicunknown
ss2627706833SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4420711fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa01/06/1701/06/17151Genomicunknown
ss2632788389ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs2031920-131_T_R_18899365fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa02/02/1702/02/17151Genomicunknown
ss2699023324GRF|rs2031920fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa02/13/1702/13/17151Genomicunknown
ss2710726242ILLUMINA|Consortium-OncoArray_15047405_A_rs2031920-131_T_R_1889936528fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa03/22/1703/22/17151Genomicunknown
ss2895305905GNOMAD|rs2031920fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa05/19/1705/19/17151Genomicunknown
ss3007433531SWEGEN|NC_000010.10:g.135339845C>Tfwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa05/30/1705/30/17151Genomicunknown
ss3021294530ILLUMINA|MEGA_Consortium_v2_15070954_A2_10:135339845-C-T-0_T_R_2304242158fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa06/28/1706/28/17151Genomicunknown
ss3134812650TOPMED|TOPMed_freeze_5?chr10:133,526,341fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa09/29/1709/29/17151Genomicunknown
ss3349401340CSHL|rs2031920fwd/C/Taagattcattgttaatataaaagtaaaaattgcaacctatgaattaagaa10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2031920|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 CCCGGCCAGG CCTGGCTGGG CCCACACAGG ACAACAGGGT TCAGGGGTCT GGACAGCTGT
 TTCTGCCCAG GGAATTGTCC CTGCCACCTC ACACTGGCCA CTGGAAAGGA AAGAGAGGAG
 GAGGCGGCAG GCTAACCCAC CCGTGAGCCA GTCGAGTCTA CATTGTCAGT TCTCACCTCG
 AGGGGTGCCA AAAACCAGAG GGAAGCAAAG GCCCCTGAAG CCTCTGCCAG AGGCCAACGC
 CCCTTCTTGG TTCAGGAGAG GTGCAGTGTT AGGTGCAGCA CAACCAATGA CTTGCTTATG
 TGGCTAATAA ATTGTCAAGA GAAAAACTGG GTTAGAATGC AATATATAGT ATGTAGTCTC
 ATTTTTGTAT AAATACAAGT ATAGAATGGC ATAACTCAAA ATCCACAAGT GATTTGGCTG
 GATTGTAAAT GACTTTTATT TTCTTCATTT CTCATCATAT TTTCTATTAT ACATAAAGAT
 TCATTGTTAA TATAAAAGTA
 Y
 AAAATTGCAA CCTATGAATT AAGAACTTCT ATATATTGCC AGTTAGAAGA CAGAATGAAA
 AACATTCTCT TCATTCTAAC CACACACACA AAAAAGCTCC ACAAAATACC TATGGACTAC
 CTTCATAGAA GGTGGAAGAG GGTCTGTATG AAGAAAATAA TTAATACATG AAAGAAGAAG
 CTAGTCAATG TGGAGCTCTA TTGTGTCCCG GGATCAACAA AGACAAGATA TCTTTAAAAT
 CGTCTTCTAA ATTTACCCTA ATGTAAAACA AATCCAATAA AACTCTAATG TAATTTTTTA
 AGAATTTAAA TTTGGAATAA TTCCAAAGAA CAATTTTTCT TAATTTTCTA CAGCCAGAAT
 ATATACCTTT AAAAAAAATG AAAACAGAGA TTAACTTTCT CAGAATTGGT TGACTCACTC
 TTTCCTTTTA TTTTTCTTCC ATGGAATTTT CCAGTTAACT TGAGAAAGTG GAATCGAATT
 CCGATGTTGA ATTTTCCTTC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_028298.2 ABBA01006221
dbSNP Blast Analysis
OMIM
124040.0001

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss1339759262EAS 1008AF 0.797599970.20240000
EUR 1006AF 0.959200020.04080000
AFR 1322AF 0.998499990.00150000
AMR 694AF 0.884700000.11530001
SAS 978AF 0.990799960.00920000
ss138752734ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ss235407853pilot_1_CEU_low_coverage_panel 120AF 0.933333340.06666667
ss24093297AFD_EUR_PANELEuropean 48IG0.958333310.04166667 1.000000000.979166690.02083333
AFD_AFR_PANELAfrican American 46IG0.956521750.04347826 1.000000000.978260870.02173913
AFD_CHN_PANELAsian 48IG0.666666690.291666660.041666671.000000000.812500000.18750000
ss242070311pilot_1_CHB+JPT_low_coverage_panel 120AF 0.783333360.21666667
ss2940808AfAmAfrican American 12IG1.00000000 1.00000000
CaucasianEuropean 24IG1.00000000 1.00000000
AsianAsian 6IG0.666666690.33333334 0.833333310.16666667
CEPHEuropean 10IG1.00000000 1.00000000
PDpanelGlobal 44IG0.863636370.13636364 1.000000000.931818190.06818182
HapMap-CEUEuropean 226IG0.876106200.12389380 1.000000000.938053070.06194690
HapMap-HCBAsian 86IG0.534883740.348837200.116279070.317310000.709302310.29069766
HapMap-JPTAsian 172IG0.662790720.290697660.046511630.583882000.808139560.19186047
HapMap-YRISub-Saharan African 116IG1.00000000 1.00000000
HAPMAP-CHBAsian 80IG0.649999980.224999990.125000000.020022000.762499990.23750000
HAPMAP-CHD 170IG0.647058840.305882360.047058820.751830000.800000010.20000000
HAPMAP-GIH 176IG0.977272750.02272727 1.000000000.988636370.01136364
HAPMAP-MEX 100IG0.740259770.246753250.012987010.654721000.870000000.13000000
HAPMAP-TSI 176IG0.897727250.10227273 1.000000000.948863630.05113636
AX-AM 20IG0.899999980.10000000 1.000000000.949999990.05000000
AX-AT 20IG0.500000000.400000010.100000001.000000000.699999990.30000001
AX-ME 10IG1.00000000 1.00000000
CEU 118IG0.881355940.11864407 1.000000000.940677940.05932203
CHB 90IG0.533333360.355555560.111111110.371093000.711111130.28888890
CN-CC 48IG0.750000000.208333330.041666670.438578000.854166690.14583333
CN-GA 58IG0.689655180.31034482 0.654721000.844827590.15517241
CN-HM 48IG0.416666660.58333331 0.200325000.708333310.29166666
CN-JI 62IG0.516129020.451612890.032258060.342782000.741935490.25806451
CN-JN 48IG0.916666690.08333334 1.000000000.958333310.04166667
CN-SH 36IG0.777777790.22222222 1.000000000.888888900.11111111
CN-UG 46IG0.608695630.39130434 0.527089000.804347810.19565217
CN-WA 104IG0.653846140.326923070.019230770.527089000.817307710.18269230
ID-AL 38IG0.842105270.15789473 1.000000000.921052630.07894737
ID-DY 18IG0.666666690.33333334 0.833333310.16666667
ID-JA 66IG0.727272750.27272728 0.654721000.863636370.13636364
ID-JV 34IG0.823529420.17647059 1.000000000.911764680.08823530
ID-KR 34IG0.588235320.352941190.058823531.000000000.764705900.23529412
ID-LA 40IG0.750000000.150000010.100000000.050043000.824999990.17500000
ID-LE 38IG0.894736830.10526316 1.000000000.947368440.05263158
ID-ML 18IG0.888888900.11111111 0.944444420.05555556
ID-MT 26IG0.615384640.307692320.076923080.654721000.769230780.23076923
ID-RA 32IG0.812500000.18750000 1.000000000.906250000.09375000
ID-SB 38IG0.736842100.26315790 0.751830000.868421080.13157895
ID-SO 38IG0.842105270.15789473 1.000000000.921052630.07894737
ID-SU 48IG0.791666690.20833333 1.000000000.895833310.10416666
ID-TB 40IG0.800000010.20000000 1.000000000.899999980.10000000
ID-TR 40IG0.550000010.400000010.050000001.000000000.750000000.25000000
IN-DR 44IG0.954545440.04545455 1.000000000.977272750.02272727
IN-EL 32IG0.875000000.12500000 1.000000000.937500000.06250000
IN-IL 24IG0.916666690.08333334 1.000000000.958333310.04166667
IN-NI 40IG0.750000000.25000000 1.000000000.875000000.12500000
IN-NL 30IG1.00000000 1.00000000
IN-SP 44IG1.00000000 1.00000000
IN-TB 42IG0.952380960.04761905 1.000000000.976190450.02380952
IN-WI 48IG1.00000000 1.00000000
IN-WL 28IG0.928571400.07142857 1.000000000.964285730.03571429
JP-ML 136IG0.676470580.294117660.029411761.000000000.823529420.17647059
JP-RK 98IG0.510204080.428571430.061224490.654721000.724489810.27551019
JPT 88IG0.636363630.318181810.045454551.000000000.795454560.20454545
KR-KR 176IG0.659090940.295454530.045454550.654721000.806818190.19318181
MY-BD 90IG0.800000010.155555560.044444450.099721000.877777760.12222222
MY-JH 94IG0.957446810.04255319 1.000000000.978723410.02127660
MY-KN 34IG0.764705900.23529412 1.000000000.882352950.11764706
MY-KS 58IG1.00000000 1.00000000
MY-MN 40IG0.750000000.25000000 1.000000000.875000000.12500000
MY-TM 88IG0.931818190.06818182 1.000000000.965909060.03409091
PI-AE 16IG0.625000000.37500000 0.812500000.18750000
PI-AG 14IG0.714285730.28571430 0.857142870.14285715
PI-AT 38IG0.842105270.105263160.052631580.099721000.894736830.10526316
PI-IR 14IG0.857142870.14285715 0.928571400.07142857
PI-MA 36IG0.777777790.166666670.055555560.200325000.861111100.13888890
PI-MW 28IG0.857142870.14285715 1.000000000.928571400.07142857
PI-UB 40IG0.750000000.25000000 1.000000000.875000000.12500000
PI-UI 40IG0.649999980.300000010.050000001.000000000.800000010.20000000
PI-UN 38IG0.684210540.31578946 0.751830000.842105270.15789473
SG-CH 60IG0.433333340.533333360.033333340.150222000.699999990.30000001
SG-ID 60IG0.933333340.06666667 1.000000000.966666640.03333334
SG-ML 60IG0.666666690.266666680.066666670.371093000.800000010.20000000
TH-HM 40IG0.400000010.400000010.200000000.479500000.600000020.40000001
TH-KA 40IG0.850000020.15000001 1.000000000.925000010.07500000
TH-LW 38IG0.842105270.15789473 1.000000000.921052630.07894737
TH-MA 36IG0.888888900.11111111 1.000000000.944444420.05555556
TH-MO 38IG0.631578920.315789460.052631581.000000000.789473710.21052632
TH-PL 36IG0.666666690.33333334 0.654721000.833333310.16666667
TH-PP 32IG0.750000000.187500000.062500000.250592000.843750000.15625000
TH-TK 36IG0.777777790.22222222 1.000000000.888888900.11111111
TH-TL 38IG0.578947370.368421050.052631581.000000000.763157900.23684211
TH-TN 36IG0.666666690.33333334 0.654721000.833333310.16666667
TH-TU 36IG0.777777790.22222222 1.000000000.888888900.11111111
TH-TY 32IG0.562500000.375000000.06250000 0.750000000.25000000
TH-YA 36IG0.555555580.44444445 0.479500000.777777790.22222222
TW-HA 96IG0.625000000.333333340.041666671.000000000.791666690.20833333
TW-HB 64IG0.593750000.281250000.125000000.150222000.734375000.26562500
YRI 116IG1.00000000 1.00000000
ss5586445P1 204AF0.901999950.09799999 1.000000000.950999980.04899999
CAUC1 62AF0.967999990.03200000 1.000000000.983999970.01600000
AFR1 48AF1.00000000 1.00000000
HISP1 46AF0.782999930.21700001 1.000000000.890999970.10900000
PAC1 48AF0.833000000.16700000 1.000000000.917000000.08300000
ss6312565PO000020C 182AF 0.929999950.07000000
ss97699210J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.125+/-0.2170000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNYES

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