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Reference SNP (refSNP) Cluster Report: rs200737100                 **Clinical Channel**
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:136/149
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:A:somatic
G:germline
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • NC_000024.10:g.5747377G>A
  • NC_000024.9:g.5615418G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283911277 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs200737100 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss283911277GMI|GMI_AK_SNP_8231779fwd/A/Gttctcacattttactataagcagtctagtaagtcatgccataccctcaaccgtttgctta12/16/1012/16/10137Genomicunknown
ss532300559LIMM_YCR_PGG|NC_000024.9:g.5615418G>Afwd/TA/Gttctcacattttactataagcagtctagtaagtcatgccataccctcaaccgtttgctta06/20/1206/20/12136Genomicunknown
ss567111780TISHKOFF|snp_chrY_5615418fwd/TA/Gacattttactataagcagtctagtaagtcatgccataccctcaaccgttt11/22/1211/23/12138Genomicunknown
ss663092957SSMP|Y_5615418fwd/TA/Gacattttactataagcagtctagtaagtcatgccataccctcaaccgttt12/14/1202/14/15138Genomicunknown
ss1958168099ILLUMINA|JHU_Y.5615417-1_B_R_2220359867fwd/TA/Gacattttactataagcagtctagtaagtcatgccataccctcaaccgttt11/13/1511/13/15147Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs200737100|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=147
 TGAAGGTAGG CGTGCTTCCA AAGCTTGTGC AAGTTGCACC TTCCTGGAGA TGACACTGTG
 TGGATGCTAC CATGGTTTAA CACCTGTGCC TTCCAGAGGG GCAACCAGAG CTGCACCTGG
 GCCTGCTTGA GCCACAGATG GGGTGGCCAA AGAGTGCTTT GCTGGAATGT GGAGAGTAGA
 ACTTTGTCAT CATTGTGCCC CAAAAGCCCT GGCATTTTGG GCCTGTAATG GGTGGTGCAA
 TCCCGAAGAT CTCTGAAATG CTTTTAGGAT CATTCTTCCA TTGTCTTGAT ACAAAGCATC
 TGGCTTCCTT CTATTCATAC TAATCTCCTT ATTAAACACT CACTTGGCCA CATCCTTGAT
 GTTCTTTCCT GAACATTTTC CCACTCTTTA AAACATGGCC AGGCTGAGAA TTTTCCAAAC
 CTTTAAGCCC CCCTTTCCTT TTGATTATGA ATTCCAATTT TGTTTCTTTT TTCTCACATT
 TTACTATAAG CAGTCTAGTA
 R
 AGTCATGCCA TACCCTCAAC CGTTTGCTTA AGGATTTCTT CTACCAAATG TTCTATTTCA
 TAACTCCTTC CCTGGAACAC TATGATATGA ACATAATTCA GCCAAGTTGT TTGCTGGTTT
 ATATCAAGAA TCACCTTTCA TCTAGCTTTT AACAATCTTT CCTCATTTCA GTCTGATATT
 TCATGAGAAT GGCCTTCACT GTCACAAACA TTCTGGTGGT GATCACTTAG GTAATTTCTA
 AGAAGACTGA GGTTTTCTCT ACAGCTCTCT TCTTATTTGA AGACTTCACC AGAATTTCCC
 TTTTTAGTCA GTTCACAGCA GTACAGGCTG CTTCTACCAT ACACTTCAAA ATTCCTCCAG
 GCTTTACCCA TTACCGAGTT CCAAGGTGCT TTCATATTTT TATGTATTTG TTACAGCAGC
 ACCCCACTTC TTATAACCAA TATCTCTCTG TGTCTATTTG GGCTACTATA ACAAAATATC
 TTAAACTGAG TAATTTATAA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis
OMIM
211980

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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