NCBI
dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Re-designed RefSNP Report page!
Clean, modern design that makes it easy to find the information that you are looking for. Report any problems by sending us an email.
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs153734                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.3213/1609 (1000 Genomes)
C=0.2873/36075 (TOPMED)
HGVS Names
  • CM000665.2:g.64092333C>T
  • NC_000003.11:g.64078009C>T
  • NC_000003.12:g.64092333C>T
  • NG_031930.1:g.138123G>A
  • NR_045697.1:n.199-2761C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss277155057 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs153734 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss321510KWOK|OVLP-000621-24286fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca06/30/0010/10/0379Genomic99 %
ss331366KWOK|OVLP-000621-57251fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca06/30/0010/10/0379Genomic99 %
ss1141300KWOK|OVLP-000804-413217rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga09/02/0010/10/0386Genomic99 %
ss1141920KWOK|OVLP-000804-416151fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca09/02/0010/10/0386Genomic99 %
ss1787629KWOK|OVLP-000925-462524rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga10/05/0010/10/0387Genomic99 %
ss1787800KWOK|OVLP-000925-467071fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca10/05/0010/10/0387Genomic99 %
ss2154042TSC-CSHL|TSC0517146byFreqfwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca10/19/0010/21/0488Genomic95 %
ss3253545YUSUKE|IMS-JST063630fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca09/05/0110/10/03100Genomicunknown
ss3606747SC_JCM|AC011312.9_44196fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca09/24/0110/10/03100Genomicunknown
ss10099059BCM_SSAHASNP|chr3.NT_005999.15_13015870rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga06/27/0310/10/03116Genomicunknown
ss22018571SSAHASNP|WGSA-200403-chr3.chr3.NT_022517.16_64000347rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga03/20/0403/20/04121Genomicunknown
ss23910531PERLEGEN|afd4271618byFreqrev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga08/10/0409/13/04123Genomicunknown
ss44419208ABI|hCV618588byFreqrev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga07/18/0511/03/06126Genomicunknown
ss66147290AFFY|SNP_A-2121286byFreqfwd/TA/Gagtcttacccaccctactaatcacaaggactt10/27/0608/14/07127Genomicunknown
ss66830505ILLUMINA|HumanHap300v1.1_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca11/09/0611/09/06127Genomicunknown
ss67127834ILLUMINA|HumanHap550v1.1_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca11/14/0611/14/06127Genomicunknown
ss67467093ILLUMINA|HumanHap650Yv1.0_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca11/14/0611/14/06127Genomicunknown
ss70441223ILLUMINA|HumanHap300v2.0_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca04/18/0711/18/07127Genomicunknown
ss70629848ILLUMINA|HumanHap550v3.0__rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca04/20/0703/30/08130Genomicunknown
ss71179738ILLUMINA|HumanHap650Yv3.0_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca04/23/0704/23/07127Genomicunknown
ss75883690ILLUMINA|ILMN_Human_1M_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca08/28/0708/29/07129Genomicunknown
ss76171866AFFY|AFFY_6_1M_SNP_A-2121286byFreqfwd/TA/Gagtcttacccaccctactaatcacaaggactt08/28/0703/07/10129Genomicunknown
ss83369259KRIBB_YJKIM|KHS445252fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca12/04/0712/04/07130Genomicunknown
ss83579866HGSV|Cor18956_SNV_20070510.chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga11/30/0712/05/07130Genomicunknown
ss84047385HGSV|Cor19240_SNV_20070510.chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga11/30/0712/06/07130Genomicunknown
ss92116166BCMHGSC_JDW|JWB-1603308rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga02/26/0803/02/08129Genomicunknown
ss99098273HUMANGENOME_JCVI|1103656117523rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga04/02/0804/02/08130Genomicunknown
ss103944443BGI|BGI_rs153734rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga06/07/0806/19/09131Genomicunknown
ss1102656351000GENOMES|NA19240_2008_12_16_640006_chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga12/17/0812/17/08130Genomicunknown
ss1118330601000GENOMES|CEU.trio.12.15.2008_714695_chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga12/17/0812/17/08130Genomicunknown
ss117110476ILLUMINA-UK|NA18507_000087813_NCBI36.1_chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga01/18/0901/18/09130Genomic99 %
ss121741030ILLUMINA|HumanCNV370v1_C_rs153734fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca04/14/0904/14/09131Genomicunknown
ss135280123ENSEMBL|ENSSNP2187735rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga12/08/0810/15/09131Genomicunknown
ss138904595ENSEMBL|ENSSNP12325368rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga05/18/0905/18/09131Genomicunknown
ss153499707ILLUMINA|Human610_Quadv1_B_rs153734-127_T_F_1501672706fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca06/18/0906/19/09131Genomicunknown
ss155570394GMI|GMI_SNP_27544991rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga06/24/0906/24/09131Genomicunknown
ss159282020ILLUMINA|Human660W-Quad_v1_A_rs153734-128_T_F_1501672706fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca07/06/0907/06/09131Genomicunknown
ss160368793ILLUMINA|HumanOmni1-Quad_v1-0_B_rs153734-128_T_F_1501672706fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca08/04/0910/02/09131Genomicunknown
ss162207185COMPLETE_GENOMICS|NA07022_36_chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga09/28/0909/28/09132Genomicunknown
ss163486146COMPLETE_GENOMICS|NA19240_36_chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga09/29/0909/29/09132Genomicunknown
ss166657856COMPLETE_GENOMICS|NA20431_36_chr3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga09/30/0909/30/09132Genomicunknown
ss170621588ILLUMINA|HumanCNV370-Quadv3_C_rs153734-127_T_F_1501672706fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca10/01/0910/03/09132Genomicunknown
ss172565847ILLUMINA|Human1M-Duov3_B_rs153734-127_T_F_1501672706fwd/TA/Gtcggaatagtaagtagtcttacccaccctactaatcacaaggacttgggagtggcagaca10/01/0910/02/09132Genomicunknown
ss172705960AFFY|GenomeWideSNP_5_SNP_A-2121286fwd/TA/Gagtcttacccaccctactaatcacaaggactt10/01/0910/02/09132Genomicunknown
ss202624630BUSHMAN|BUSHMAN-chr3-64053048byFreqrev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga02/16/1009/05/14132Genomicunknown
ss206020830BCM-HGSC-SUB|BCM_CMT_1011-571793rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga03/15/1003/17/10132Genomicunknown
ss2201797001000GENOMES|pilot_1_YRI_1989383_chr3_64053049rev/C/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga04/22/1004/22/10132Genomicunknown
ss2318519711000GENOMES|pilot_1_CEU_1456600_chr3_64053049rev/C/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga05/01/1005/01/10132Genomicunknown
ss2392590631000GENOMES|pilot_1_CHB+JPT_1144140_chr3_64053049rev/C/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga05/01/1005/01/10132Genomicunknown
ss253142337BL|SNP70219_3_64053049rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga08/18/1008/18/10134Genomicunknown
ss277155057GMI|GMI_AK_SNP_1475266rev/C/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga12/16/1012/16/10137Genomicunknown
ss292811157PJP|SNP_2317515_chr3_64053049rev/C/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga01/21/1101/21/11134Genomicunknown
ss469414423PAGE_STUDY|PAGE_MEC_Y2_rs153734rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat09/26/1109/26/11137Genomicunknown
ss480021754ILLUMINA|HumanOmni2.5-4v1_B_rs153734-128_T_F_1617218044rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat01/30/1210/28/16137Genomicunknown
ss480030521ILLUMINA|HumanOmniExpress-12v1_C_rs153734-131_T_F_1857617305rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat01/30/1210/27/16137Genomicunknown
ss480692573ILLUMINA|HumanOmni1-Quad_v1-0_C_rs153734-131_T_F_1865427267rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat01/30/1208/28/15146Genomicunknown
ss484809050ILLUMINA|HumanOmni2.5-4v1_D_rs153734-131_T_F_1857617305rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat01/30/1210/28/16137Genomicunknown
ss491341959EXOME_CHIP|.GWAS._58186_chr_3_64078009rev/BC/Ttgtctgccactcccaagtccttgtgattagtagggtgggtaagactacttactattccga03/05/1203/05/12137Genomicunknown
ss536889672ILLUMINA|HumanOmni5-4v1_B_rs153734-131_T_F_1885470261rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat06/22/1208/28/15146Genomicunknown
ss556665702TISHKOFF|snp_chr3_64078009rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat11/22/1211/23/12138Genomicunknown
ss650345820SSMP|3_64078009rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat12/14/1202/10/15138Genomicunknown
ss778437416ILLUMINA|HumanOmni25Exome-8v1_A_rs153734-131_T_F_1865427267rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/30/1307/09/15146Genomicunknown
ss782851092ILLUMINA|HumanOmni2.5-4v1_H_rs153734-131_T_F_1857617305rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/30/1307/28/15146Genomicunknown
ss783815630ILLUMINA|HumanOmniExpressExome-8v1_A_rs153734-131_T_F_1885470261rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/31/1306/19/15146Genomicunknown
ss825410207ILLUMINA|HumanCNV370v1_C_rs153734-126_T_F_IFB1137710521:0rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat06/24/1311/21/14147Genomicunknown
ss832104970ILLUMINA|HumanOmniExpress-12v1_H_rs153734-131_T_F_1857617305rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat09/17/1306/18/15146Genomicunknown
ss833892929ILLUMINA|HumanOmni2.5-8v1_A_rs153734-131_T_F_1865427267rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat09/18/1307/28/15146Genomicunknown
ss978675261EVA-GONL|EVA-GONL_rs153734rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat04/23/1404/24/14142Genomicunknown
ss1070470501JMKIDD_LAB|HGDP_WGS_chr3_64078009rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat07/10/1407/10/14142Genomicunknown
ss13043206581000GENOMES|PHASE3_V1_15598525rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat08/16/1408/16/14142Genomicunknown
ss1429444162DDI|DDI_rs153734rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat11/04/1411/05/14144Genomicunknown
ss1579995533EVA_GENOME_DK|EVA_GENOME_DK_snv_rs153734rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat02/19/1502/20/15144Genomicunknown
ss1588147619EVA_DECODE|EVA_DECODE_3_64053049_525252_rs153734rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat03/02/1503/03/15144Genomicunknown
ss1607241106EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_3_64078009_8637085rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat03/04/1503/04/15144Genomicunknown
ss1650235139EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_3_64078009_8637085rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat03/04/1503/04/15144Genomicunknown
ss1712582345EVA_SVP|EVA_SVP_276890rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat03/12/1503/12/15144Genomicunknown
ss1752479760ILLUMINA|OmniExpressExome-8v1-1_B_rs153734-131_T_F_1885470261rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/27/1506/09/15146Genomicunknown
ss1799389605HAMMER_LAB|Hsieh_1645243rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat07/15/1507/15/15146Genomicunknown
ss1921912785WEILL_CORNELL_DGM|SNV:chr3:64078009rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat10/16/1510/17/15147Genomicunknown
ss1969410923GENOMED|rs153734rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat02/16/1602/16/16147Genomicunknown
ss2021516563JJLAB|SNP2019118rev/BC/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat08/29/1608/30/16149Genomicunknown
ss2149591506USC_VALOUEV|NC_000003.11:g.64078009C>Trev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat11/17/1611/17/16150Genomicunknown
ss2252240444HUMAN_LONGEVITY|HLI-3-64092333-C-Trev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat11/18/1611/18/16150Genomicunknown
ss2419313065TOPMED|3_64078009_C/Trev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat11/19/1611/19/16150Genomicunknown
ss2625256503SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV1263751rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat01/06/1701/06/17151Genomicunknown
ss2633960037ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs153734-131_T_F_21311rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat02/02/1702/02/17151Genomicunknown
ss2633960038ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs153734-131_T_F_188547026rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat02/02/1702/02/17151Genomicunknown
ss2633960039ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs153734-131_T_F_21302rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat02/02/1702/02/17151Genomicunknown
ss2704968623GRF|rs153734rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat02/13/1702/13/17151Genomicunknown
ss2710974693ILLUMINA|Consortium-OncoArray_15047405_A_chr3_64078009_C_T-100_B_F_219875rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat03/22/1703/22/17151Genomicunknown
ss2793861866GNOMAD|rs153734rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/18/1705/18/17151Genomicunknown
ss2985260181AFFY|Axiom_PsorMich_Affx-22590675rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/24/1705/24/17151Genomicunknown
ss2992441087SWEGEN|NC_000003.11:g.64078009C>Trev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat05/30/1705/30/17151Genomicunknown
ss3022248512ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs153734-138_T_F_2264214043rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat06/28/1706/28/17151Genomicunknown
ss3024521406BIOINF_KMB_FNS_UNIBA|3.64092333C>Trev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat07/05/1707/05/17151Genomicunknown
ss3345055089CSHL|rs153734rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat10/02/1710/02/17151Genomicunknown
ss3392646631TOPMED|TOPMed_freeze_5?chr3:64,092,333rev/C/Tgccactcccaagtccttgtgattagtagggtgggtaagactacttactat10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs153734|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TCCCTGTTGA GAACCACTGG TTTCAATGCA TTGCCTTCTT AGTGTCTTTG TTCCTTGAGA
 ATTCTTGAAA CTGATTCCTA CCCAGGCCAC ACAGTTAATT TTCAGTTATT AGCAAGAATT
 GAAAGCAGCA GATGACCCAA AAATATTTGT GTTTGCTTTT AAGCAAATAA TAAGTGGTCT
 GTCTGGAGAA TTACATCCAT GTCTGTGTTC TGGTTAGGGC AGCATTAACA CTGACTGGGA
 GCCAGGACCA AGGCAGCATG TAAATTCAAT TTCCCCGTGT CTGATCCACA ACATTAGGGA
 CTTGCTGGAT GCTATAATAT CATCTATTCA TTCATTCAAC AAATATTTAT CAAAAGGCTT
 TCTCTAGCCA GGAACCGTTC TAGGTGCTTG GAATACAATA ATGTGCAAAA CAAACAAAAA
 TCCCTACCTT AAAGGAGTTT ACAAACTTTA CTTTCAACTA GGCAAGACAT TCGGAATAGT
 AAGTAGTCTT ACCCACCCTA
 R
 CTAATCACAA GGACTTGGGA GTGGCAGACA ACAAGAGTTG TTTCATTGTA AGACATTCTA
 AGAGCTTTTG AATAAAAACT TGAACTGGAA ATGGCAATTG TGCCTGTTCT GCTTACAGAC
 ATGCCATAGA GCATGGCCTG CAGGCAACCA TGGTTTTTAA TATACAGCCT CCCTGTTTCC
 CCTCTTCAGC CAAAATGATT GTAGTCAGGT ATAGCACCCT ACCAGCAATC TTATAAGCAT
 GATAAGCTGG ACTTATCAGA TTCGCTCTCT CAAGAATACA GGCTGGGCAC AGTGGTTCAT
 GTCTATAATC CCAGCACTTT GGGAGGCTGA GGTGGGAGGA TCACTTGAGG CCAGGAGTTC
 AAGACCAGCC TGAGCAACAT AGCAAGACCC GCCCCCGCCC CCATCGCCTC CGTCTCTATG
 GAAAAAGAAC AAAAACAAAA ACCAGTAGCT GGCATAATGG TGCAAACCTG TAGTCCCAGG
 TACTGAGGAG GCTGAAGCAG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022517 ABBA01024311 AC018656 AC018656.10 AC021874 AC021874.17 AC021874.18
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs153734 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss117110476YRI 2IG 1.00000000 0.500000000.50000000
ss1304320658EAS 1008AF 0.588299990.41169998
EUR 1006AF 0.771399970.22860001
AFR 1322AF 0.519699990.48030001
AMR 694AF 0.832899990.16710000
SAS 978AF 0.782199980.21780001
ss135280123ENSEMBL_Venter 2IG1.00000000 1.00000000
ss138904595ENSEMBL_Watson 2IG1.00000000 1.00000000
ss162207185CEUEuropean 2IG1.00000000 1.00000000
ss163486146YRISub-Saharan African 2IG1.00000000 1.00000000
ss166657856PGP 2IG1.00000000 1.00000000
ss202624630BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
BANTU 2IG 1.00000000 0.500000000.50000000
ss2154042HapMap-CEUEuropean 226IG0.566371680.327433620.106194690.099721000.730088470.26991150
HapMap-HCBAsian 86IG0.302325580.418604640.279069780.294266000.511627910.48837209
HapMap-JPTAsian 172IG0.372093020.511627910.116279070.402784000.627906980.37209302
HapMap-YRISub-Saharan African 226IG0.300884960.530973430.168141590.402784000.566371680.43362832
HAPMAP-ASW 98IG0.346938790.469387770.183673471.000000000.581632670.41836736
HAPMAP-CHBAsian 82IG0.292682920.609756110.097560970.099721000.597561000.40243903
HAPMAP-CHD 166IG0.325301200.554216860.120481930.200325000.602409660.39759037
HAPMAP-GIH 176IG0.681818190.250000000.068181820.099721000.806818190.19318181
HAPMAP-LWK 180IG0.177777780.444444450.377777790.527089000.400000010.60000002
HAPMAP-MEX 100IG0.720000030.259999990.020000001.000000000.850000020.15000001
HAPMAP-MKK 284IG0.183098580.457746480.359154940.527089000.411971840.58802819
HAPMAP-TSI 174IG0.735632180.252873570.011494250.583882000.862068950.13793103
ss220179700pilot_1_YRI_low_coverage_panel 118AF 0.550847470.44915253
ss231851971pilot_1_CEU_low_coverage_panel 120AF 0.708333310.29166666
ss23910531AFD_EUR_PANELEuropean 40IG0.550000010.44999999 0.438578000.774999980.22499999
AFD_AFR_PANELAfrican American 46IG0.391304340.521739130.086956520.479500000.652173940.34782609
AFD_CHN_PANELAsian 44IG0.227272730.590909060.181818190.402784000.522727250.47727272
ss239259063pilot_1_CHB+JPT_low_coverage_panel 120AF 0.541666690.45833334
ss44419208AoD_African_American 90AF 0.589999970.41000003
AoD_Caucasian 92AF 0.790000020.20999999
AoD_Chinese 90AF 0.490000040.50999999
AoD_Japanese 90AF 0.579999980.41999999
ss66147290HapMap-CEUEuropean 118IG0.576271180.288135590.135593220.050043000.720339000.27966103
HapMap-HCBAsian 90IG0.288888900.488888890.222222221.000000000.533333360.46666667
HapMap-JPTAsian 90IG0.333333340.555555580.111111110.273322000.611111100.38888890
HapMap-YRISub-Saharan African 120IG0.316666660.516666650.166666670.751830000.574999990.42500001
ss76171866ICMHP 10IG0.600000020.200000000.20000000 0.699999990.30000001
ss99098273J. Craig Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.436+/-0.1670000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement