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Reference SNP (refSNP) Cluster Report: rs1465788                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:88/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.2881/1443 (1000 Genomes)
T=0.2920/36666 (TOPMED)
HGVS Names
  • CM000676.2:g.68796882T>C
  • NC_000014.8:g.69263599T>C
  • NC_000014.9:g.68796882T>C
  • NM_001244701.1:c.-733A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282049236 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1465788 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2286109TSC-CSHL|TSC0381118fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt10/20/0010/25/0688Genomic95 %
ss17524286CSHL-HAPMAP|CSHL-HuCC-200402.chr14.NT_026437.10_49183640byFreqrev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca02/19/0410/26/06120Genomicunknown
ss19304387CSHL-HAPMAP|CSHL-HuDD-200402.chr14.NT_026437.10_49183640rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca02/20/0403/04/04120Genomicunknown
ss23650510PERLEGEN|afd0195401byFreqrev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca08/10/0409/13/04123Genomicunknown
ss43620486ABI|hCV3222834byFreqrev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca07/18/0511/03/06126Genomicunknown
ss66085507AFFY|SNP_A-1928637byFreqrev/BC/Tttcacttggcaaaggatattcagtgtagactt10/27/0608/14/07127Genomicunknown
ss66672137ILLUMINA|HumanHap300v1.1_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt11/09/0611/09/06127Genomicunknown
ss67110953ILLUMINA|HumanHap550v1.1_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt11/14/0611/14/06127Genomicunknown
ss67447772ILLUMINA|HumanHap650Yv1.0_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt11/14/0611/14/06127Genomicunknown
ss69160852PERLEGEN|PGP00195401byFreqrev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca01/30/0708/14/07127Genomicunknown
ss70434865ILLUMINA|HumanHap300v2.0_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt04/18/0711/18/07127Genomicunknown
ss70621336ILLUMINA|HumanHap550v3.0__rs1465788rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca04/20/0703/30/08130Genomicunknown
ss71170071ILLUMINA|HumanHap650Yv3.0_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt04/23/0704/23/07127Genomicunknown
ss75611902ILLUMINA|ILMN_Human_1M_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt08/28/0708/29/07129Genomicunknown
ss76032429AFFY|AFFY_6_1M_SNP_A-1928637rev/BC/Tttcacttggcaaaggatattcagtgtagactt08/28/0708/29/07129Genomicunknown
ss78415513HGSV|Cor12878_SNV_20070510.chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca10/17/0710/19/07129Genomicunknown
ss79032724HGSV|Cor18507_SNV_20070510.chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca10/19/0710/21/07129Genomicunknown
ss83269560HGSV|Cor18555_SNV_20070510.chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca11/27/0712/04/07130Genomicunknown
ss83787412KRIBB_YJKIM|KHS543304fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt12/04/0712/05/07130Genomicunknown
ss85660084HGSV|Cor18517_SNV_20070510.chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca12/06/0712/09/07130Genomicunknown
ss89982621BCMHGSC_JDW|JWB-0788507rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca02/26/0802/28/08129Genomicunknown
ss96925269HUMANGENOME_JCVI|1103649089617rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca03/27/0803/27/08130Genomicunknown
ss103195609BGI|BGI_rs1465788rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca06/05/0806/18/09131Genomicunknown
ss1084258791000GENOMES|CEU.trio.12.15.2008_3068535_chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca12/15/0812/15/08130Genomicunknown
ss1134823411000GENOMES|NA19240_2008_12_16_2752047_chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca12/18/0812/18/08130Genomicunknown
ss118554297ILLUMINA-UK|NA18507_000062478_NCBI36.1_chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca01/21/0901/21/09130Genomic99 %
ss121708928ILLUMINA|HumanCNV370v1_C_rs1465788fwd/TA/Gtgaccatttaatggaagtctacactgaatatcctttgccaagtgaatagccccggaattt04/14/0904/14/09131Genomicunknown
ss134030232ENSEMBL|ENSSNP6656979rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca05/11/0905/15/09131Genomicunknown
ss143228990ENSEMBL|ENSSNP1022815byFreqrev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca12/08/0803/07/10131Genomicunknown
ss153454250ILLUMINA|Human610_Quadv1_B_rs1465788-128_B_R_1501669211rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca06/18/0906/19/09131Genomicunknown
ss155938798GMI|GMI_SNP_65034432rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca06/24/0906/24/09131Genomicunknown
ss159273258ILLUMINA|Human660W-Quad_v1_A_rs1465788-128_B_R_1501669211rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca07/06/0907/06/09131Genomicunknown
ss168240006COMPLETE_GENOMICS|NA07022_36_chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca09/30/0909/30/09132Genomicunknown
ss169842441COMPLETE_GENOMICS|NA19240_36_chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca10/01/0910/01/09132Genomicunknown
ss170540425ILLUMINA|HumanCNV370-Quadv3_C_rs1465788-128_B_R_1501669211rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca10/01/0910/03/09132Genomicunknown
ss170647747AFFY|GenomeWideSNP_5_SNP_A-1928637rev/BC/Tttcacttggcaaaggatattcagtgtagactt10/01/0910/02/09132Genomicunknown
ss171273326COMPLETE_GENOMICS|NA20431_36_chr14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca10/01/0910/01/09132Genomicunknown
ss172522726ILLUMINA|Human1M-Duov3_B_rs1465788-128_B_R_1501669211rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca10/01/0910/02/09132Genomicunknown
ss200218831BUSHMAN|BUSHMAN-chr14-68333351byFreqrev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca02/16/1009/05/14132Genomicunknown
ss206842481BCM-HGSC-SUB|BCM_CMT_1011-2580708rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca03/15/1003/18/10132Genomicunknown
ss2266300951000GENOMES|pilot_1_YRI_8439778_chr14_68333352rev/C/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca04/22/1004/22/10132Genomicunknown
ss2365874441000GENOMES|pilot_1_CEU_6192073_chr14_68333352rev/C/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca05/01/1005/01/10132Genomicunknown
ss2430126221000GENOMES|pilot_1_CHB+JPT_4897699_chr14_68333352rev/C/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca05/01/1005/01/10132Genomicunknown
ss255072591BL|SNP53799_14_68333352rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca08/19/1008/20/10134Genomicunknown
ss282049236GMI|GMI_AK_SNP_6369625rev/C/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca12/16/1012/16/10137Genomicunknown
ss286862607GMI|GMI_NA10851_SNP_2875398rev/C/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca12/17/1012/17/10138Genomicunknown
ss291622321PJP|SNP_1128679_chr14_68333352rev/C/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca01/21/1101/21/11134Genomicunknown
ss491486544EXOME_CHIP|.GWAS._202770_chr_14_69263599rev/BC/Taaattccggggctattcacttggcaaaggatattcagtgtagacttccattaaatggtca03/05/1203/05/12137Genomicunknown
ss536876442ILLUMINA|HumanOmni5-4v1_B_rs1465788-131_B_R_1885471431rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat06/22/1208/29/15146Genomicunknown
ss564163560TISHKOFF|snp_chr14_69263599rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat11/22/1211/23/12138Genomicunknown
ss659852411SSMP|14_69263599rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat12/14/1202/13/15138Genomicunknown
ss780681983ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs1465788-131_B_R_1990479654rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/30/1307/10/15142Genomicunknown
ss783355316ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs1465788-131_B_R_1990479654rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/31/1306/18/15142Genomicunknown
ss825404139ILLUMINA|HumanCNV370v1_C_rs1465788-126_B_R_IFB1135727953:0rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat06/24/1311/21/14147Genomicunknown
ss991270973EVA-GONL|EVA-GONL_rs1465788rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat04/23/1404/25/14142Genomicunknown
ss1079749598JMKIDD_LAB|HGDP_WGS_chr14_69263599rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat07/10/1407/12/14142Genomicunknown
ss13514778291000GENOMES|PHASE3_V1_64725693rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat08/16/1408/16/14142Genomicunknown
ss1427459188DDI|DDI_rs1465788rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat11/04/1411/04/14144Genomicunknown
ss1577326699EVA_GENOME_DK|EVA_GENOME_DK_snv_rs1465788rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat02/19/1502/19/15144Genomicunknown
ss1631990904EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_14_69263599_35825078rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat03/04/1503/04/15144Genomicunknown
ss1674984937EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_14_69263599_35825078rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat03/04/1503/04/15144Genomicunknown
ss1695275334EVA_DECODE|EVA_DECODE_14_68333352_390457_rs1465788rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat03/02/1503/04/15144Genomicunknown
ss1713453442EVA_SVP|EVA_SVP_1147809rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat03/12/1503/12/15144Genomicunknown
ss1752139827ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs1465788-131_B_R_1990479654rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/27/1506/09/15146Genomicunknown
ss1807972498HAMMER_LAB|Hsieh_6996528rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat07/15/1507/16/15146Genomicunknown
ss1917889961ILLUMINA|HumanExome-12v1-1_B_exm-rs1465788-131_B_R_1990479654rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat10/16/1510/16/15147Genomicunknown
ss1934643822WEILL_CORNELL_DGM|SNV:chr14:69263599rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat10/16/1510/17/15147Genomicunknown
ss1946379870ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs1465788-131_B_R_1990479654rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat10/29/1510/29/15147Genomicunknown
ss1959563301ILLUMINA|exm-rs1465788-131_B_R_1990479654rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat11/13/1511/13/15147Genomicunknown
ss1967989383GENOMED|rs1465788rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat02/16/1602/16/16147Genomicunknown
ss2028102329JJLAB|SNP8604884rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat08/29/1608/31/16149Genomicunknown
ss2094882468ILLUMINA|Immuno_BeadChip_11419691_B_imm_14_68333352-1_B_F_1670082461rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat09/27/1609/27/16150Genomicunknown
ss2095052475ILLUMINA|InfiniumImmunoArray-24v2-0_A_imm_14_68333352-1_B_F_2310584329rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat09/27/1609/27/16150Genomicunknown
ss2095052476ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs1465788-138_B_R_2264356110rev/BC/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat09/27/1609/27/16150Genomicunknown
ss2156478159USC_VALOUEV|NC_000014.8:g.69263599T>Crev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat11/17/1611/17/16150Genomicunknown
ss2202968214HUMAN_LONGEVITY|HLI-14-68796882-T-Crev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat11/18/1611/18/16150Genomicunknown
ss2367343218TOPMED|14_69263599_T/Crev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat11/19/1611/19/16150Genomicunknown
ss2628540417SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5493559rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat01/06/1701/06/17151Genomicunknown
ss2633166038ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs1465788-131_B_R_18854714rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat02/02/1702/02/17151Genomicunknown
ss2633166039ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs1465788-131_B_R_2130rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat02/02/1702/02/17151Genomicunknown
ss2700908697GRF|rs1465788rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat02/13/1702/13/17151Genomicunknown
ss2929049011GNOMAD|rs1465788rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/23/1705/23/17151Genomicunknown
ss2985024788AFFY|Axiom_PsorMich_Affx-10839111rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/24/1705/24/17151Genomicunknown
ss2985657910AFFY|Axiom_Smokesc1_Affx-10839111rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/24/1705/24/17151Genomicunknown
ss3012394675SWEGEN|NC_000014.8:g.69263599T>Crev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat05/30/1705/30/17151Genomicunknown
ss3027875834BIOINF_KMB_FNS_UNIBA|14.68796882T>Crev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat07/05/1707/05/17151Genomicunknown
ss3214297689TOPMED|TOPMed_freeze_5?chr14:68,796,882rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat10/01/1710/01/17151Genomicunknown
ss3350861919CSHL|rs1465788rev/C/Tccggggctattcacttggcaaaggatattcagtgtagacttccattaaat10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1465788|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CAGACCCCCC AGGGCAATGC TGGACCTGGG ATTGGATTCT CAGTAGTCCT AGCAGGAGGC
 GGCCTGCTCC CAAACCCAAA GATTCCAGAC ACCCTGCAGT GCCGCATTTA CCGTAGACCC
 TAAAGTGCCC TCTCCTGAGG CCTCTGCCTT GTTCAGGAGA ATATTGACAG CTCAGTAATA
 CACACTAAGC TTTCTGAGGG GCTTGAGGGC TTTGAGAGAT AAGATAGTCT GGCTTGTACA
 GACTACCACA GGGCCCCAGT GATGTAGTTG TTTTCAAAAA TACTTGTGTC AATAATCAGG
 TATTTTTCAG ATGGGCAACA GATCCCCATC ACCCTACCCT GAACCACTTT ACTCTCCCCC
 AGGCTCCAAG CCCAGGGCCT CTCCCCATTT CCAGGCCTCA GGGCCTGTCT TATCCAGGGC
 TGGGGGTGGA GGCTAGAGAG TGACACAGAT CAAACTTATA AGTTGTCAGT TGACCATTTA
 ATGGAAGTCT ACACTGAATA
 R
 TCCTTTGCCA AGTGAATAGC CCCGGAATTT GTTTTGTGGT GTAATAAGGG TTGCCAAATG
 GCTTAGTTTA CATACAACAG CATGACATAT AGACGGTTGC AGCGAGACAT GACTCTAGGC
 ACTTTATGGG CCAAATGTAG GCAGTTATCA TGATTCCTAT TTCAGAGATG AAGAAATTGA
 GGCCTTGGTC AGTGACTTGA AAAGTCACAT AGCTAGAAAA TGGCCAAGAT TTGGATCCAG
 GATTGCCTAA CTTCAATATA CTGGCTCACT GATTCTCAAA CATTAGTATT TGGGTCGTGA
 GATGGAAATT TACCAAAAAT GCAGATTCCC CGGCCCCATC TGGGCCAGGG AATCAGCATT
 CCAAACTTTA AACAAGGGGA CTCCAGGTGT CTCTCTCTCT TTCAACCTGA AGAATTTGGG
 GGATTTTGCA AATGACCTGA AGCCTGAGAG GAAGTGCAAC ACTGCAGGGC TCTCAGGAGG
 GGGTACCCTG CTGACGCCTG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_026437 ABBA01023685
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs1465788 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss118554297YRI 2IG 1.00000000 1.00000000
ss134030232ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1351477829EAS 1008AF 0.188500000.81150001
EUR 1006AF 0.276299980.72369999
AFR 1322AF 0.323800000.67619997
AMR 694AF 0.309800000.69020003
SAS 978AF 0.339500010.66049999
ss143228990ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 6IG0.33333334 0.66666669 0.333333340.66666669
ss168240006CEUEuropean 2IG 1.00000000 1.00000000
ss169842441YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss171273326PGP 2IG 1.00000000 0.500000000.50000000
ss17524286HapMap-CEUEuropean 226IG0.088495570.371681420.539823000.527089000.274336280.72566372
HapMap-HCBAsian 86IG0.023255810.418604640.558139560.273322000.232558150.76744187
HapMap-JPTAsian 172IG0.081395350.372093020.546511650.654721000.267441870.73255813
HapMap-YRISub-Saharan African 226IG0.115044250.442477880.442477881.000000000.336283180.66371679
HAPMAP-ASW 98IG0.142857150.408163280.448979590.527089000.346938790.65306121
HAPMAP-CHBAsian 82IG0.097560970.390243890.512195110.751830000.292682920.70731705
HAPMAP-CHD 170IG0.070588240.388235300.541176501.000000000.264705900.73529410
HAPMAP-GIH 176IG0.113636370.500000000.386363630.479500000.363636370.63636363
HAPMAP-LWK 180IG0.033333340.400000010.566666660.273322000.233333330.76666665
HAPMAP-MEX 100IG0.120000000.560000000.319999990.250592000.400000010.60000002
HAPMAP-MKK 284IG0.161971840.422535210.415492950.250592000.373239430.62676054
HAPMAP-TSI 176IG0.079545450.409090910.511363631.000000000.284090910.71590906
ENSEMBL_Venter 2IG1.00000000 1.00000000
ss200218831BUSHMAN_POP 2IG 1.00000000 0.500000000.50000000
BANTU 2IG 1.00000000 0.500000000.50000000
ss226630095pilot_1_YRI_low_coverage_panel 118AF 0.338983060.66101694
ss23650510AFD_EUR_PANELEuropean 48IG0.166666670.291666660.541666690.150222000.312500000.68750000
AFD_AFR_PANELAfrican American 46IG0.086956520.478260870.434782590.751830000.326086970.67391306
AFD_CHN_PANELAsian 48IG0.083333340.291666660.625000000.402784000.229166670.77083331
ss236587444pilot_1_CEU_low_coverage_panel 120AF 0.266666680.73333335
ss243012622pilot_1_CHB+JPT_low_coverage_panel 120AF 0.283333330.71666664
ss43620486AoD_African_American 90AF 0.389999990.61000001
AoD_Caucasian 92AF 0.200000000.80000001
AoD_Chinese 90AF 0.100000000.89999998
AoD_Japanese 90AF 0.250000000.75000000
ss66085507HapMap-CEUEuropean 118IG0.050847460.423728820.525423710.479500000.262711850.73728812
HapMap-HCBAsian 90IG0.022222220.422222230.555555580.250592000.233333330.76666665
HapMap-JPTAsian 90IG0.066666670.422222230.511111140.751830000.277777790.72222221
HapMap-YRISub-Saharan African 120IG0.166666670.400000010.433333340.294266000.366666670.63333333
ss69160852HapMap-CEUEuropean 120IG0.050000000.416666660.533333360.527089000.258333330.74166667
HapMap-HCBAsian 90IG0.022222220.422222230.555555580.250592000.233333330.76666665
HapMap-JPTAsian 90IG0.066666670.422222230.511111140.751830000.277777790.72222221
HapMap-YRISub-Saharan African 120IG0.166666670.400000010.433333340.294266000.366666670.63333333
ss76032429ICMHP 8IG 1.00000000 1.00000000
ss96925269J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.410+/-0.1920000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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