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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1453354057

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr7:105168094 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.000008 (2/264690, TOPMED)
A=0.00000 (0/14050, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
SRPK2 : Missense Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 14050 C=1.00000 A=0.00000
European Sub 9690 C=1.0000 A=0.0000
African Sub 2898 C=1.0000 A=0.0000
African Others Sub 114 C=1.000 A=0.000
African American Sub 2784 C=1.0000 A=0.0000
Asian Sub 112 C=1.000 A=0.000
East Asian Sub 86 C=1.00 A=0.00
Other Asian Sub 26 C=1.00 A=0.00
Latin American 1 Sub 146 C=1.000 A=0.000
Latin American 2 Sub 610 C=1.000 A=0.000
South Asian Sub 98 C=1.00 A=0.00
Other Sub 496 C=1.000 A=0.000


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.999992 A=0.000008
Allele Frequency Aggregator Total Global 14050 C=1.00000 A=0.00000
Allele Frequency Aggregator European Sub 9690 C=1.0000 A=0.0000
Allele Frequency Aggregator African Sub 2898 C=1.0000 A=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 C=1.000 A=0.000
Allele Frequency Aggregator Other Sub 496 C=1.000 A=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 C=1.000 A=0.000
Allele Frequency Aggregator Asian Sub 112 C=1.000 A=0.000
Allele Frequency Aggregator South Asian Sub 98 C=1.00 A=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 7 NC_000007.14:g.105168094C>A
GRCh37.p13 chr 7 NC_000007.13:g.104808541C>A
Gene: SRPK2, SRSF protein kinase 2 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
SRPK2 transcript variant 1 NM_182692.3:c.340G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform a NP_872634.1:p.Gly114Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 6 NM_001350740.2:c.451G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform d NP_001337669.1:p.Gly151Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 9 NM_001350743.2:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform g NP_001337672.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 3 NM_001278273.2:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform b precursor NP_001265202.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 7 NM_001350741.2:c.340G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform e NP_001337670.1:p.Gly114Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 12 NM_001350746.2:c.418G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform i NP_001337675.1:p.Gly140Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 11 NM_001350745.2:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform h NP_001337674.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 8 NM_001350742.2:c.418G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform f NP_001337671.1:p.Gly140Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 2 NM_182691.3:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform b precursor NP_872633.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 10 NM_001350744.2:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform g NP_001337673.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 5 NM_001350739.2:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform c NP_001337668.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant 4 NM_001350738.2:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform b NP_001337667.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X13 XM_011516538.3:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X6 XP_011514840.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X1 XM_024446893.2:c.418G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X1 XP_024302661.1:p.Gly140Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X5 XM_017012561.3:c.418G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X2 XP_016868050.2:p.Gly140Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X7 XM_024446894.2:c.451G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X3 XP_024302662.1:p.Gly151Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X8 XM_024446895.2:c.451G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X4 XP_024302663.1:p.Gly151Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X10 XM_011516536.4:c.340G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X5 XP_011514838.1:p.Gly114Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X11 XM_006716098.4:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X6 XP_006716161.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X12 XM_047420772.1:c.307G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X6 XP_047276728.1:p.Gly103Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X18 XM_047420773.1:c.340G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X7 XP_047276729.1:p.Gly114Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X19 XM_047420774.1:c.7G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X8 XP_047276730.1:p.Gly3Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X20 XM_047420775.1:c.7G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X8 XP_047276731.1:p.Gly3Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X21 XM_047420776.1:c.340G>T G [GGG] > W [TGG] Coding Sequence Variant
SRSF protein kinase 2 isoform X9 XP_047276732.1:p.Gly114Trp G (Gly) > W (Trp) Missense Variant
SRPK2 transcript variant X2 XR_001744861.3:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X3 XR_001744862.3:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X4 XR_007060147.1:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X6 XR_001744863.3:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X9 XR_007060148.1:n.455G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X14 XR_007060149.1:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X15 XR_007060150.1:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X16 XR_007060151.1:n.536G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X17 XR_007060152.1:n.455G>T N/A Non Coding Transcript Variant
SRPK2 transcript variant X22 XR_007060153.1:n.455G>T N/A Non Coding Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= A
GRCh38.p14 chr 7 NC_000007.14:g.105168094= NC_000007.14:g.105168094C>A
GRCh37.p13 chr 7 NC_000007.13:g.104808541= NC_000007.13:g.104808541C>A
SRPK2 transcript variant X11 XM_006716098.4:c.307= XM_006716098.4:c.307G>T
SRPK2 transcript variant X11 XM_006716098.3:c.307= XM_006716098.3:c.307G>T
SRPK2 transcript variant X15 XM_006716098.2:c.307= XM_006716098.2:c.307G>T
SRPK2 transcript variant X4 XM_006716098.1:c.307= XM_006716098.1:c.307G>T
SRPK2 transcript variant X10 XM_011516536.4:c.340= XM_011516536.4:c.340G>T
SRPK2 transcript variant X10 XM_011516536.3:c.340= XM_011516536.3:c.340G>T
SRPK2 transcript variant X12 XM_011516536.2:c.340= XM_011516536.2:c.340G>T
SRPK2 transcript variant X11 XM_011516536.1:c.340= XM_011516536.1:c.340G>T
SRPK2 transcript variant X2 XR_001744861.3:n.536= XR_001744861.3:n.536G>T
SRPK2 transcript variant X4 XR_001744861.2:n.487= XR_001744861.2:n.487G>T
SRPK2 transcript variant X3 XR_001744861.1:n.388= XR_001744861.1:n.388G>T
SRPK2 transcript variant X6 XR_001744863.3:n.536= XR_001744863.3:n.536G>T
SRPK2 transcript variant X6 XR_001744863.2:n.480= XR_001744863.2:n.480G>T
SRPK2 transcript variant X6 XR_001744863.1:n.388= XR_001744863.1:n.388G>T
SRPK2 transcript variant X5 XM_017012561.3:c.418= XM_017012561.3:c.418G>T
SRPK2 transcript variant X7 XM_017012561.2:c.418= XM_017012561.2:c.418G>T
SRPK2 transcript variant X7 XM_017012561.1:c.307= XM_017012561.1:c.307G>T
SRPK2 transcript variant 2 NM_182691.3:c.307= NM_182691.3:c.307G>T
SRPK2 transcript variant 2 NM_182691.2:c.307= NM_182691.2:c.307G>T
SRPK2 transcript variant 1 NM_182692.3:c.340= NM_182692.3:c.340G>T
SRPK2 transcript variant 1 NM_182692.2:c.340= NM_182692.2:c.340G>T
SRPK2 transcript variant X13 XM_011516538.3:c.307= XM_011516538.3:c.307G>T
SRPK2 transcript variant X16 XM_011516538.2:c.307= XM_011516538.2:c.307G>T
SRPK2 transcript variant X15 XM_011516538.1:c.307= XM_011516538.1:c.307G>T
SRPK2 transcript variant X3 XR_001744862.3:n.536= XR_001744862.3:n.536G>T
SRPK2 transcript variant X5 XR_001744862.2:n.487= XR_001744862.2:n.487G>T
SRPK2 transcript variant X4 XR_001744862.1:n.388= XR_001744862.1:n.388G>T
SRPK2 transcript variant X1 XM_024446893.2:c.418= XM_024446893.2:c.418G>T
SRPK2 transcript variant X1 XM_024446893.1:c.418= XM_024446893.1:c.418G>T
SRPK2 transcript variant 9 NM_001350743.2:c.307= NM_001350743.2:c.307G>T
SRPK2 transcript variant 9 NM_001350743.1:c.307= NM_001350743.1:c.307G>T
SRPK2 transcript variant 10 NM_001350744.2:c.307= NM_001350744.2:c.307G>T
SRPK2 transcript variant 10 NM_001350744.1:c.307= NM_001350744.1:c.307G>T
SRPK2 transcript variant X7 XM_024446894.2:c.451= XM_024446894.2:c.451G>T
SRPK2 transcript variant X8 XM_024446894.1:c.451= XM_024446894.1:c.451G>T
SRPK2 transcript variant 7 NM_001350741.2:c.340= NM_001350741.2:c.340G>T
SRPK2 transcript variant 7 NM_001350741.1:c.340= NM_001350741.1:c.340G>T
SRPK2 transcript variant 8 NM_001350742.2:c.418= NM_001350742.2:c.418G>T
SRPK2 transcript variant 8 NM_001350742.1:c.418= NM_001350742.1:c.418G>T
SRPK2 transcript variant 4 NM_001350738.2:c.307= NM_001350738.2:c.307G>T
SRPK2 transcript variant 4 NM_001350738.1:c.307= NM_001350738.1:c.307G>T
SRPK2 transcript variant 5 NM_001350739.2:c.307= NM_001350739.2:c.307G>T
SRPK2 transcript variant 5 NM_001350739.1:c.307= NM_001350739.1:c.307G>T
SRPK2 transcript variant 3 NM_001278273.2:c.307= NM_001278273.2:c.307G>T
SRPK2 transcript variant 3 NM_001278273.1:c.307= NM_001278273.1:c.307G>T
SRPK2 transcript variant X8 XM_024446895.2:c.451= XM_024446895.2:c.451G>T
SRPK2 transcript variant X9 XM_024446895.1:c.451= XM_024446895.1:c.451G>T
SRPK2 transcript variant 6 NM_001350740.2:c.451= NM_001350740.2:c.451G>T
SRPK2 transcript variant 6 NM_001350740.1:c.451= NM_001350740.1:c.451G>T
SRPK2 transcript variant 11 NM_001350745.2:c.307= NM_001350745.2:c.307G>T
SRPK2 transcript variant 11 NM_001350745.1:c.307= NM_001350745.1:c.307G>T
SRPK2 transcript variant 12 NM_001350746.2:c.418= NM_001350746.2:c.418G>T
SRPK2 transcript variant 12 NM_001350746.1:c.418= NM_001350746.1:c.418G>T
SRPK2 transcript variant X17 XR_007060152.1:n.455= XR_007060152.1:n.455G>T
SRPK2 transcript variant X14 XR_007060149.1:n.536= XR_007060149.1:n.536G>T
SRPK2 transcript variant X12 XM_047420772.1:c.307= XM_047420772.1:c.307G>T
SRPK2 transcript variant X20 XM_047420775.1:c.7= XM_047420775.1:c.7G>T
SRPK2 transcript variant X19 XM_047420774.1:c.7= XM_047420774.1:c.7G>T
SRPK2 transcript variant X18 XM_047420773.1:c.340= XM_047420773.1:c.340G>T
SRPK2 transcript variant X21 XM_047420776.1:c.340= XM_047420776.1:c.340G>T
SRPK2 transcript variant X9 XR_007060148.1:n.455= XR_007060148.1:n.455G>T
SRPK2 transcript variant X4 XR_007060147.1:n.536= XR_007060147.1:n.536G>T
SRPK2 transcript variant X15 XR_007060150.1:n.536= XR_007060150.1:n.536G>T
SRPK2 transcript variant X22 XR_007060153.1:n.455= XR_007060153.1:n.455G>T
SRPK2 transcript variant X16 XR_007060151.1:n.536= XR_007060151.1:n.536G>T
SRSF protein kinase 2 isoform X6 XP_006716161.1:p.Gly103= XP_006716161.1:p.Gly103Trp
SRSF protein kinase 2 isoform X5 XP_011514838.1:p.Gly114= XP_011514838.1:p.Gly114Trp
SRSF protein kinase 2 isoform X2 XP_016868050.2:p.Gly140= XP_016868050.2:p.Gly140Trp
SRSF protein kinase 2 isoform b precursor NP_872633.1:p.Gly103= NP_872633.1:p.Gly103Trp
SRSF protein kinase 2 isoform a NP_872634.1:p.Gly114= NP_872634.1:p.Gly114Trp
SRSF protein kinase 2 isoform X6 XP_011514840.1:p.Gly103= XP_011514840.1:p.Gly103Trp
SRSF protein kinase 2 isoform X1 XP_024302661.1:p.Gly140= XP_024302661.1:p.Gly140Trp
SRSF protein kinase 2 isoform g NP_001337672.1:p.Gly103= NP_001337672.1:p.Gly103Trp
SRSF protein kinase 2 isoform g NP_001337673.1:p.Gly103= NP_001337673.1:p.Gly103Trp
SRSF protein kinase 2 isoform X3 XP_024302662.1:p.Gly151= XP_024302662.1:p.Gly151Trp
SRSF protein kinase 2 isoform e NP_001337670.1:p.Gly114= NP_001337670.1:p.Gly114Trp
SRSF protein kinase 2 isoform f NP_001337671.1:p.Gly140= NP_001337671.1:p.Gly140Trp
SRSF protein kinase 2 isoform b NP_001337667.1:p.Gly103= NP_001337667.1:p.Gly103Trp
SRSF protein kinase 2 isoform c NP_001337668.1:p.Gly103= NP_001337668.1:p.Gly103Trp
SRSF protein kinase 2 isoform b precursor NP_001265202.1:p.Gly103= NP_001265202.1:p.Gly103Trp
SRSF protein kinase 2 isoform X4 XP_024302663.1:p.Gly151= XP_024302663.1:p.Gly151Trp
SRSF protein kinase 2 isoform d NP_001337669.1:p.Gly151= NP_001337669.1:p.Gly151Trp
SRSF protein kinase 2 isoform h NP_001337674.1:p.Gly103= NP_001337674.1:p.Gly103Trp
SRSF protein kinase 2 isoform i NP_001337675.1:p.Gly140= NP_001337675.1:p.Gly140Trp
SRSF protein kinase 2 isoform X6 XP_047276728.1:p.Gly103= XP_047276728.1:p.Gly103Trp
SRSF protein kinase 2 isoform X8 XP_047276731.1:p.Gly3= XP_047276731.1:p.Gly3Trp
SRSF protein kinase 2 isoform X8 XP_047276730.1:p.Gly3= XP_047276730.1:p.Gly3Trp
SRSF protein kinase 2 isoform X7 XP_047276729.1:p.Gly114= XP_047276729.1:p.Gly114Trp
SRSF protein kinase 2 isoform X9 XP_047276732.1:p.Gly114= XP_047276732.1:p.Gly114Trp
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

2 SubSNP, 2 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2736682516 Nov 08, 2017 (151)
2 TOPMED ss4757869710 Apr 26, 2021 (155)
3 TopMed NC_000007.14 - 105168094 Apr 26, 2021 (155)
4 ALFA NC_000007.14 - 105168094 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss2736682516 NC_000007.13:104808540:C:A NC_000007.14:105168093:C:A (self)
595247269, 6800581302, ss4757869710 NC_000007.14:105168093:C:A NC_000007.14:105168093:C:A (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1453354057

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07