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Reference SNP (refSNP) Cluster Report: rs10517086                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.1859/931 (1000 Genomes)
A=0.2650/33270 (TOPMED)
HGVS Names
  • CM000666.2:g.26083889G>A
  • NC_000004.11:g.26085511G>A
  • NC_000004.12:g.26083889G>A
  • XR_925506.2:n.1400+3299G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss284867720 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10517086 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss14918300PERLEGEN|PS03446201byFreqfwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag11/13/0304/07/04119Genomicunknown
ss24381823PERLEGEN|afd3446201byFreqfwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag08/10/0409/13/04123Genomicunknown
ss44538383ABI|hCV30562980byFreqfwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag07/19/0511/03/06126Genomicunknown
ss66013559AFFY|SNP_A-1693382fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/26/0610/26/06127Genomicunknown
ss66570815ILLUMINA|HumanHap300v1.1_rs10517086fwd/BA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag11/09/0611/09/06127Genomicunknown
ss66894597ILLUMINA|HumanHap550v1.1_rs10517086fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag11/14/0611/14/06127Genomicunknown
ss67002416ILLUMINA|HumanHap650Yv1.0_rs10517086fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag11/14/0611/14/06127Genomicunknown
ss70375429ILLUMINA|HumanHap300v2.0_rs10517086fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag04/18/0711/18/07127Genomicunknown
ss70490627ILLUMINA|HumanHap550v3.0__rs10517086rev/BC/Tctcctgtgtccctgagtttatgacaaccttcaagaccatcctttttgtaaaaaatatata04/20/0703/30/08130Genomicunknown
ss71015153ILLUMINA|HumanHap650Yv3.0_rs10517086fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag04/23/0704/23/07127Genomicunknown
ss74949316ILLUMINA|ILMN_Human_1M_rs10517086fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag08/28/0708/29/07129Genomicunknown
ss79019695HGSV|Cor18507_SNV_20070510.chr4_25761780fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag10/19/0710/21/07129Genomicunknown
ss84977770KRIBB_YJKIM|KHS864791fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag12/04/0712/08/07130Genomicunknown
ss1129918191000GENOMES|CEU.trio.12.15.2008_938297_chr4_25694609fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag12/18/0812/18/08130Genomicunknown
ss116916896ILLUMINA-UK|NA18507_000040091_NCBI36.1_chr4_25694609fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag01/18/0901/18/09130Genomic99 %
ss121363285ILLUMINA|HumanCNV370v1_C_rs10517086fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag04/14/0904/14/09131Genomicunknown
ss152786227ILLUMINA|Human610_Quadv1_B_rs10517086-127_B_R_1501622757rev/BC/Tctcctgtgtccctgagtttatgacaaccttcaagaccatcctttttgtaaaaaatatata06/18/0906/19/09131Genomicunknown
ss159135437ILLUMINA|Human660W-Quad_v1_A_rs10517086-128_B_R_1501622757rev/BC/Tctcctgtgtccctgagtttatgacaaccttcaagaccatcctttttgtaaaaaatatata07/06/0907/06/09131Genomicunknown
ss159908552ILLUMINA|HumanOmni1-Quad_v1-0_B_rs10517086-128_B_R_1501622757rev/BC/Tctcctgtgtccctgagtttatgacaaccttcaagaccatcctttttgtaaaaaatatata08/04/0910/01/09131Genomicunknown
ss161959556COMPLETE_GENOMICS|NA07022_36_chr4_25694609fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag09/28/0909/28/09132Genomicunknown
ss166325866COMPLETE_GENOMICS|NA20431_36_chr4_25694609fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag09/30/0909/30/09132Genomicunknown
ss169544821ILLUMINA|HumanCNV370-Quadv3_C_rs10517086-127_B_R_1501622757rev/BC/Tctcctgtgtccctgagtttatgacaaccttcaagaccatcctttttgtaaaaaatatata10/01/0910/02/09132Genomicunknown
ss170342170ILLUMINA|Human1M-Duov3_B_rs10517086-127_B_R_1501622757rev/BC/Tctcctgtgtccctgagtttatgacaaccttcaagaccatcctttttgtaaaaaatatata10/01/0910/01/09132Genomicunknown
ss198223351BUSHMAN|BUSHMAN-chr4-25694608byFreqfwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag02/16/1009/05/14132Genomicunknown
ss2208091811000GENOMES|pilot_1_YRI_2618864_chr4_25694609fwd/A/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag04/22/1004/22/10132Genomicunknown
ss2323070101000GENOMES|pilot_1_CEU_1911639_chr4_25694609fwd/A/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag05/01/1005/01/10132Genomicunknown
ss284867720GMI|GMI_NA10851_SNP_880493fwd/A/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag12/17/1012/17/10138Genomicunknown
ss479312728ILLUMINA|HumanOmni2.5-4v1_B_rs10517086-128_B_R_1745425537fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac01/30/1210/28/16137Genomicunknown
ss479315828ILLUMINA|HumanOmniExpress-12v1_C_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac01/30/1210/27/16137Genomicunknown
ss479700073ILLUMINA|HumanOmni1-Quad_v1-0_C_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac01/30/1208/28/15146Genomicunknown
ss484456675ILLUMINA|HumanOmni2.5-4v1_D_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac01/30/1210/28/16137Genomicunknown
ss491354568EXOME_CHIP|.GWAS._70795_chr_4_26085511fwd/TA/Gtatatattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacacaggag03/05/1203/05/12137Genomicunknown
ss536622026ILLUMINA|HumanOmni5-4v1_B_rs10517086-131_B_R_1908658390fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac06/22/1208/28/15146Genomicunknown
ss557387436TISHKOFF|snp_chr4_26085511fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/22/1211/23/12138Genomicunknown
ss651157805SSMP|4_26085511fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac12/14/1202/10/15138Genomicunknown
ss778687443ILLUMINA|HumanOmni25Exome-8v1_A_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/30/1307/09/15146Genomicunknown
ss780680593ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs10517086-131_B_R_1990478007fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/30/1307/09/15146Genomicunknown
ss782674892ILLUMINA|HumanOmni2.5-4v1_H_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/30/1307/28/15146Genomicunknown
ss783353874ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs10517086-131_B_R_1990478007fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/31/1306/19/15146Genomicunknown
ss783643559ILLUMINA|HumanOmniExpressExome-8v1_A_rs10517086-131_B_R_1908658390fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/31/1306/19/15146Genomicunknown
ss825345040ILLUMINA|HumanCNV370v1_C_rs10517086-126_B_R_IFB1135112985:0fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac06/24/1311/21/14144Genomicunknown
ss831925607ILLUMINA|HumanOmniExpress-12v1_H_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac09/17/1306/18/15146Genomicunknown
ss834146120ILLUMINA|HumanOmni2.5-8v1_A_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac09/18/1307/28/15146Genomicunknown
ss979891750EVA-GONL|EVA-GONL_rs10517086fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac04/23/1404/24/14142Genomicunknown
ss1071369785JMKIDD_LAB|HGDP_WGS_chr4_26085511fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac07/10/1407/11/14142Genomicunknown
ss13088994851000GENOMES|PHASE3_V1_20368587fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac08/16/1408/16/14142Genomicunknown
ss1429812100DDI|DDI_rs10517086fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/04/1411/05/14144Genomicunknown
ss1580464830EVA_GENOME_DK|EVA_GENOME_DK_snv_rs10517086fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/19/1502/20/15144Genomicunknown
ss1589383357EVA_DECODE|EVA_DECODE_4_25694609_227570_rs10517086fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac03/02/1503/03/15144Genomicunknown
ss1609660679EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_4_26085511_11291812fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac03/04/1503/04/15144Genomicunknown
ss1652654712EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_4_26085511_11291812fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac03/04/1503/04/15144Genomicunknown
ss1712659999EVA_SVP|EVA_SVP_354366fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac03/12/1503/12/15144Genomicunknown
ss1752517830ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs10517086-131_B_R_1990478007fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/27/1506/09/15146Genomicunknown
ss1752517831ILLUMINA|OmniExpressExome-8v1-1_B_rs10517086-131_B_R_1908658390fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/27/1506/09/15146Genomicunknown
ss1917779431ILLUMINA|HumanExome-12v1-1_B_exm-rs10517086-131_B_R_1990478007fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/16/1510/16/15147Genomicunknown
ss1923126669WEILL_CORNELL_DGM|SNV:chr4:26085511fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/16/1510/17/15147Genomicunknown
ss1946112509ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs10517086-131_B_R_1990478007fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/29/1510/29/15147Genomicunknown
ss1946112510ILLUMINA|HumanCoreExome-12v1-0_C_rs10517086-131_B_R_1908658390fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/29/1510/29/15147Genomicunknown
ss1958669518ILLUMINA|exm-rs10517086-131_B_R_1990478007fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/13/1511/13/15147Genomicunknown
ss1958669519ILLUMINA|rs10517086-131_B_R_1908658390fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/13/1511/13/15147Genomicunknown
ss1969688152GENOMED|rs10517086fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/16/1602/16/16147Genomicunknown
ss2022141135JJLAB|SNP2643690fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac08/29/1608/30/16149Genomicunknown
ss2094814998ILLUMINA|Immuno_BeadChip_11419691_B_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac09/27/1609/27/16150Genomicunknown
ss2095142979ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs10517086-131_B_R_1853225077fwd/TA/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac09/27/1609/27/16150Genomicunknown
ss2150250742USC_VALOUEV|NC_000004.11:g.26085511G>Afwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/17/1611/17/16150Genomicunknown
ss2261359912HUMAN_LONGEVITY|HLI-4-26083889-G-Afwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/18/1611/18/16150Genomicunknown
ss2428872558TOPMED|4_26085511_G/Afwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac11/20/1611/20/16150Genomicunknown
ss2634096725ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs10517086-131_B_R_213fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/02/1702/02/17151Genomicunknown
ss2634096726ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs10517086-131_B_R_1908658fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/02/1702/02/17151Genomicunknown
ss2634096727ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs10517086-131_B_R_213fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/02/1702/02/17151Genomicunknown
ss2635131024ILLUMINA|Cancer_BeadChip_11459870_A_rs10517086-128_B_R_1745425537fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/02/1702/02/17151Genomicunknown
ss2705700877GRF|rs10517086fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac02/13/1702/13/17151Genomicunknown
ss2711001421ILLUMINA|Consortium-OncoArray_15047405_A_rs10517086-131_B_R_1908658390fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac03/22/1703/22/17151Genomicunknown
ss2806930641GNOMAD|rs10517086fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/18/1705/18/17151Genomicunknown
ss2985288640AFFY|Axiom_PsorMich_Affx-24271791fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/24/1705/24/17151Genomicunknown
ss2985910950AFFY|Axiom_Smokesc1_Affx-24271791fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/24/1705/24/17151Genomicunknown
ss2994328441SWEGEN|NC_000004.11:g.26085511G>Afwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac05/30/1705/30/17151Genomicunknown
ss3022357533ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs10517086-131_B_R_1990478007fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac06/28/1706/28/17151Genomicunknown
ss3022357534ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs10517086-138_B_R_2264335120fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac06/28/1706/28/17151Genomicunknown
ss3024839772BIOINF_KMB_FNS_UNIBA|4.26083889G>Afwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac07/05/1707/05/17151Genomicunknown
ss3345601434CSHL|rs10517086fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/02/1710/02/17151Genomicunknown
ss3423308674TOPMED|TOPMed_freeze_5?chr4:26,083,889fwd/A/Gattttttacaaaaaggatggtcttgaaggttgtcataaactcagggacac10/04/1710/04/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10517086|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 GATGTTAATG GATTTGGGGC TTCCACTGGT AGACAGAGGG AAGAGGCTGT GGGGGCACGG
 CATTCAGGGA AAGAGAAACA CAGTCAATGC AAACCCCGGT GTGGAGGTAA AGACGGCATA
 GGAGCACACC TGGCAATGTG CTGGGAGCCT GAAGGTGAAG GAAGACCAGT AGGAATTGGG
 TGGGATGAGA TTTGACCCAA GGACTTGGGG TATGGTTGGT CATGGCTGAC ACTGAGCTTC
 ATTTTTCCCT CTCTGCACTG AAATTTTTTC AAGCTTTCAG TTGAGCCAGA AAGCCTCATG
 TTAGCATTGT CTTGGGGTGA AGGGAGGCAC TGAATCCATT GGATCAGGGA CACACATCCA
 GGTGGAGAAA TGGTAAGTGA ATGCCAAGAC TGTGTCTACA TTCCTTGGAA GAACCCTGGG
 CTTCCTGAAG CCTCCTGGTT TGGAAGCTGG AGTTCTTTTA TTTGCATATA TATATATTTT
 TTACAAAAAG GATGGTCTTG
 R
 AAGGTTGTCA TAAACTCAGG GACACAGGAG TTCCGTCTCA TTGTTATATT TCAGGGACTG
 AGACTTAAGA TGTTCTGCAG GACAGCTGAA ACCATGGAGA AGGGTGCTTT TTAACAGGGT
 TCACCTGTTC TGAGGACTCT GCGACCACAA GCACTTGGCC GCTGTCAGCA GGCTAGGTGA
 TTACAGCATT AGATCATGCC TCTAATGGGA AAAAGGCTTC TCCTTTCTGG CTGACTAATC
 AGCTTGCCAT TTTTATTGCA TGATCAGTAT CAAGAGCCAA TGATTTCTGT CAGCTCCCCG
 GGTGCACACT AGCATGACAG AAAGAACAGC TATATTAGCA AAGAAAACAG GTGGAGAGAT
 TAGCAAACTC ACTTAAAAGG TCAAGACAGC TTGGTCCCTT ATGGCACAGT GACAGGAAGG
 CTGAAGGGGC CCCTTTCTTA GAACAAGAAT AGCTGCTAGT ACGAAACTCC CATACTTCTA
 GTCATCTATC TAGTCATCTT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000004.6
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss116916896YRI 2IG 1.00000000 0.500000000.50000000
ss1308899485EAS 1008AF 0.003000000.99700004
EUR 1006AF 0.302200020.69780004
AFR 1322AF 0.283699990.71630001
AMR 694AF 0.206100000.79390001
SAS 978AF 0.108399990.89160001
ss14918300AfAmAfrican American 12IG 0.500000000.50000000 0.250000000.75000000
CaucasianEuropean 24IG 0.500000000.500000000.479500000.250000000.75000000
AsianAsian 12IG 1.00000000 1.00000000
CEPHEuropean 10IG 0.200000000.80000001 0.100000000.89999998
PDpanelGlobal 48IG 0.291666660.708333310.751830000.145833330.85416669
ss161959556CEUEuropean 2IG1.00000000 1.00000000
ss166325866PGP 2IG 1.00000000 0.500000000.50000000
ss198223351BUSHMAN_POP 2IG 1.00000000 0.500000000.50000000
BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss220809181pilot_1_YRI_low_coverage_panel 118AF 0.262711850.73728812
ss232307010pilot_1_CEU_low_coverage_panel 120AF 0.300000010.69999999
ss24381823AFD_EUR_PANELEuropean 48IG0.083333340.500000000.416666660.583882000.333333340.66666669
AFD_AFR_PANELAfrican American 44IG0.090909090.454545470.454545471.000000000.318181810.68181819
AFD_CHN_PANELAsian 46IG 1.00000000 1.00000000
ss44538383HapMap-CEUEuropean 226IG0.106194690.371681420.522123870.294266000.292035400.70796460
HapMap-HCBAsian 86IG 1.00000000 1.00000000
HapMap-JPTAsian 172IG 0.023255810.976744171.000000000.011627910.98837209
HapMap-YRISub-Saharan African 224IG0.125000000.330357130.544642870.050043000.290178570.70982140
HAPMAP-ASW 98IG0.061224490.469387770.469387770.402784000.295918380.70408165
HAPMAP-CHBAsian 82IG 0.024390240.975609781.000000000.012195120.98780489
HAPMAP-CHD 170IG 0.011764710.988235291.000000000.005882350.99411762
HAPMAP-GIH 176IG 0.215909090.784090940.654721000.107954550.89204544
HAPMAP-LWK 180IG0.122222220.388888900.488888890.342782000.316666660.68333334
HAPMAP-MEX 100IG0.020000000.300000010.680000010.751830000.170000000.82999998
HAPMAP-MKK 286IG0.167832170.419580430.412587400.200325000.377622370.62237763
HAPMAP-TSI 176IG0.113636370.352272720.534090940.200325000.289772720.71022725
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ENSEMBL_Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.303+/-0.2440000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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