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Reference SNP (refSNP) Cluster Report: rs1024611                 ** With Pathogenic allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (REV)
Allele Origin:C:germline
T:germline
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:With Pathogenic allele [ClinVar]
MAF/MinorAlleleCount:G=0.3636/1821 (1000 Genomes)
G=0.2865/35977 (TOPMED)
HGVS Names
  • CM000679.2:g.34252769A>G
  • NC_000017.10:g.32579788A>G
  • NC_000017.11:g.34252769A>G
  • NG_012123.1:g.2493A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss1489359 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1024611 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1489359TSC-CSHL|TSC0247833byFreqfwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca09/07/0004/07/0486Genomic95 %
ss2421117HGBASE|SNP000063327rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/07/0010/10/0389Genomicunknown
ss3547952SC_JCM|AC005549.1_63998fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca09/24/0110/10/03100Genomicunknown
ss4323363FHCRC|AAY_3byFreqrev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt01/04/0210/25/06103Genomicunknown
ss4946433YUSUKE|IMS-JST113894fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca08/01/0210/10/03108Genomicunknown
ss5112028PGA-UW-FHCRC|SCYA2-001537byFreqrev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt09/05/0204/07/04108Genomicunknown
ss6617245WI_SSAHASNP|NT_010799.11_7456662rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt02/12/0310/10/03111Genomicunknown
ss16279700SC_SNP|NT_010799.14_7316768rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt11/18/0311/22/03120Genomicunknown
ss16732732CSHL-HAPMAP|CSHL-HuAA-200402.chr17.NT_010799.14_7316768rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt02/17/0403/04/04120Genomicunknown
ss19357138CSHL-HAPMAP|CSHL-HuDD-200402.chr17.NT_010799.14_7316768rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt02/20/0403/04/04120Genomicunknown
ss66878084ILLUMINA|HumanHap550v1.1_rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca11/14/0611/14/06127Genomicunknown
ss66964832ILLUMINA|HumanHap650Yv1.0_rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca11/14/0611/14/06127Genomicunknown
ss68082357ILLUMINA|HumanHap250Sv1.0_rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca12/06/0612/07/06127Genomicunknown
ss69195004PERLEGEN|PGP13196311byFreqrev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt01/30/0708/14/07127Genomicunknown
ss70473734ILLUMINA|HumanHap550v3.0__rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca04/20/0703/29/08130Genomicunknown
ss70996044ILLUMINA|HumanHap650Yv3.0_rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca04/23/0704/23/07127Genomicunknown
ss75756862ILLUMINA|ILMN_Human_1M_rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca08/28/0708/29/07129Genomicunknown
ss76462868AFFY|AFFY_6_1M_SNP_A-8323665fwd/BC/Tgtcttctggaaagtgaagctgtctgcctccca08/28/0708/30/07130Genomicunknown
ss83663378KRIBB_YJKIM|KHS513707fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca12/04/0712/05/07130Genomicunknown
ss84473128HGSV|Cor18555_SNV_20070510.chr17_29603901rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt11/27/0712/07/07130Genomicunknown
ss86204430HGSV|Cor18956_SNV_20070510.chr17_29603901rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt11/30/0712/11/07130Genomicunknown
ss1097313751000GENOMES|CEU.trio.12.15.2008_3390741_chr17_29603901rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt12/16/0812/16/08130Genomicunknown
ss152614730ILLUMINA|Human610_Quadv1_B_rs1024611-128_B_F_1502070073fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca06/18/0906/19/09131Genomicunknown
ss157987889GMI|GMI_SNP_25954417rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt06/24/0906/25/09131Genomicunknown
ss159118094ILLUMINA|Human660W-Quad_v1_A_rs1024611-128_B_F_1502070073fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca07/06/0907/06/09131Genomicunknown
ss159882609ILLUMINA|HumanOmni1-Quad_v1-0_B_rs1024611-128_B_F_1501348066fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca08/04/0910/01/09131Genomicunknown
ss161828397ENSEMBL|ENSSNP1323365rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt09/24/0909/25/09131Genomicunknown
ss169918275ILLUMINA|Human1M-Duov3_B_rs1024611-128_B_F_1502070073fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca10/01/0910/01/09132Genomicunknown
ss171335012COMPLETE_GENOMICS|NA20431_36_chr17_29603901rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt10/01/0910/01/09132Genomicunknown
ss202402947BUSHMAN|BUSHMAN-chr17-29603900rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt02/16/1003/08/10132Genomicunknown
ss2275249941000GENOMES|pilot_1_YRI_9334677_chr17_29603901rev/A/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt04/22/1004/22/10132Genomicunknown
ss2372269181000GENOMES|pilot_1_CEU_6831547_chr17_29603901rev/A/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt05/01/1005/01/10132Genomicunknown
ss2435289771000GENOMES|pilot_1_CHB+JPT_5414054_chr17_29603901rev/A/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt05/01/1005/01/10132Genomicunknown
ss244268430ILLUMINA|CVDSNP55v1_A_rs1024611fwd/BC/Taatcagaaaagaaagtcttctggaaagtgaagctgtctgcctcccacttctgctctgtca06/10/1006/10/10132Genomicunknown
ss255598050BL|SNP35595_17_29603901rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt08/20/1008/20/10134Genomicunknown
ss282747949GMI|GMI_AK_SNP_7068366rev/A/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt12/16/1012/16/10137Genomicunknown
ss292041098PJP|SNP_1547456_chr17_29603901rev/A/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt01/21/1101/21/11134Genomicunknown
ss479236560ILLUMINA|HumanOmni2.5-4v1_B_rs1024611-128_B_F_1690703021rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc01/30/1210/28/16137Genomicunknown
ss479239221ILLUMINA|HumanOmniExpress-12v1_C_rs1024611-131_B_F_1852854227rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc01/30/1210/27/16137Genomicunknown
ss479596385ILLUMINA|HumanOmni1-Quad_v1-0_C_rs1024611-131_B_F_1865717119rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc01/30/1208/28/15146Genomicunknown
ss484419041ILLUMINA|HumanOmni2.5-4v1_D_rs1024611-131_B_F_1852854227rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc01/30/1210/27/16137Genomicunknown
ss536594236ILLUMINA|HumanOmni5-4v1_B_rs1024611-131_B_F_1885428719rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc06/22/1208/29/15146Genomicunknown
ss565242995TISHKOFF|snp_chr17_32579788rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/22/1211/23/12138Genomicunknown
ss661042382SSMP|17_32579788rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc12/14/1202/14/15138Genomicunknown
ss778352672ILLUMINA|HumanOmni25Exome-8v1_A_rs1024611-131_B_F_1867769532rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc05/30/1307/10/15146Genomicunknown
ss782655963ILLUMINA|HumanOmni2.5-4v1_H_rs1024611-131_B_F_1852854227rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc05/30/1307/29/15146Genomicunknown
ss783625095ILLUMINA|HumanOmniExpressExome-8v1_A_rs1024611-131_B_F_1885428719rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc05/31/1306/19/15146Genomicunknown
ss831906377ILLUMINA|HumanOmniExpress-12v1_H_rs1024611-131_B_F_1852854227rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc09/17/1306/18/15146Genomicunknown
ss833807377ILLUMINA|HumanOmni2.5-8v1_A_rs1024611-131_B_F_1867769532rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc09/18/1307/29/15146Genomicunknown
ss993055622EVA-GONL|EVA-GONL_rs1024611rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc04/23/1404/30/14142Genomicunknown
ss1081023811JMKIDD_LAB|HGDP_WGS_chr17_32579788rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc07/10/1407/12/14142Genomicunknown
ss13584389291000GENOMES|PHASE3_V1_71962271rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc08/16/1408/16/14142Genomicunknown
ss1428019750DDI|DDI_rs1024611rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/04/1411/04/14144Genomicunknown
ss1505810935OMIM-CURATED-RECORDS|SCV000035530rev/TA/Gtgacagagcagaagtgggaggcagacagcttcactttccagaagactttcttttctgatt12/08/1412/08/14142Genomicunknown
ss1578137514EVA_GENOME_DK|EVA_GENOME_DK_snv_rs1024611rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc02/19/1502/19/15144Genomicunknown
ss1635544694EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_17_32579788_39728570rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc03/04/1503/04/15144Genomicunknown
ss1678538727EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_17_32579788_39728570rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc03/04/1503/04/15144Genomicunknown
ss1697096409EVA_DECODE|EVA_DECODE_17_29603901_222415_rs1024611rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc03/02/1503/04/15144Genomicunknown
ss1713578876EVA_SVP|EVA_SVP_1273243rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc03/12/1503/12/15144Genomicunknown
ss1752221588ILLUMINA|OmniExpressExome-8v1-1_B_rs1024611-131_B_F_1885428719rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc05/27/1506/09/15146Genomicunknown
ss1808759699HAMMER_LAB|Hsieh_7787159rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc07/15/1507/16/15146Genomicunknown
ss1936513316WEILL_CORNELL_DGM|SNV:chr17:32579788rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc10/16/1510/19/15147Genomicunknown
ss1959740273ILLUMINA|17:32579788-A-G-0_B_R_2304247304rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/13/1511/13/15147Genomicunknown
ss1968380267GENOMED|rs1024611rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc02/16/1602/16/16147Genomicunknown
ss2029035367JJLAB|SNP9537922rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc08/29/1608/31/16149Genomicunknown
ss2094893576ILLUMINA|Immuno_BeadChip_11419691_B_1kg_17_29603901-1_T_F_1767809596rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc09/27/1609/27/16150Genomicunknown
ss2095072792ILLUMINA|InfiniumImmunoArray-24v2-0_A_1kg_17_29603901-1_T_F_2310640821rev/TA/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc09/27/1609/27/16150Genomicunknown
ss2157501232USC_VALOUEV|NC_000017.10:g.32579788A>Grev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/17/1611/17/16150Genomicunknown
ss2216422510HUMAN_LONGEVITY|HLI-17-34252769-A-Grev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/18/1611/18/16150Genomicunknown
ss2381497918TOPMED|17_32579788_A/Grev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc11/19/1611/19/16150Genomicunknown
ss2629013495SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6085871rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc01/06/1701/06/17151Genomicunknown
ss2633390192ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs1024611-131_B_F_18854287rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc02/02/1702/02/17151Genomicunknown
ss2702061559GRF|rs1024611rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc02/13/1702/13/17151Genomicunknown
ss2949224683GNOMAD|rs1024611rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc05/23/1705/23/17151Genomicunknown
ss3015441546SWEGEN|NC_000017.10:g.32579788A>Grev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc05/30/1705/30/17151Genomicunknown
ss3021772444ILLUMINA|MEGA_Consortium_v2_15070954_A2_17:32579788-A-G-0_B_R_2304247304rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc06/28/1706/28/17151Genomicunknown
ss3028338430BIOINF_KMB_FNS_UNIBA|17.34252769A>Grev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc07/05/1707/05/17151Genomicunknown
ss3261335592TOPMED|TOPMed_freeze_5?chr17:34,252,769rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc10/01/1710/01/17151Genomicunknown
ss3351722959CSHL|rs1024611rev/A/Ggagcagaagtgggaggcagacagcttcactttccagaagactttcttttc10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1024611|allelePos=1113|totalLen=1239|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 AACACTTTTC ACTACACTTG TAAAAAGAAA CGGGTTGTAT TCAACAAATG ACTGTTTTAT
 TTCTAGTAAG TGGTCAGTAA TGGCATTGTT GAGTGCATTC AGGGAGTCAG GTATGGTGCT
 GACATACTTT CCAGCGCTGC CTGCCCAGTC CTCCAACCAA CCCAGCTTTC GTTAGGTTAA
 AACTGAAGTT ATTTGTCCAG TAACTCAGAC AGAATAGTAG ATGTGCTGAG ACTCCCACCC
 AGGATGTTTC CATTCCAGAA TCTCTTCTTC CTGGGACTAG ACTTGATGTC TCATGATGGA
 TATTGGTTTC CTGGAGAATC CCAGAGCAGA GACTCTATGG AGTGGCCATT TCAGACTCTG
 GTGGAATTAC AAAAAGCAGG ATGAAGAGAG AACAAATCAA CTCGAGCCCT GCTTTGCTTG
 TGCCTCTTGA GGAGCCTTAT TCTTGTTCTG CCTGAATCTC ACTAGTTACT CCTTTTCTCC
 CCAACCAGTG TTGAAACTTC TCTGTGTTTG TCTCAGTCCT CTGCTCATGC CTCAATCCAT
 TCTTATCCAA TGAATAAAAT GTTTCCAGGA CTAGAGACTG TGCAACTTTG TGTAGGAATT
 TCTTCCTAGG CCATCTCACC TCATCTTCCA AGAAGTTTTC CTCATATCAG GGGAAACCTC
 TCTCTAATCA GTTAGTGCAT CCTTTACCAT GAACTTGGTG GACCGCATTC AATTTCCCTT
 TATAATCCAG TCATGCTTCG GGTTTTCTCT AGGTTAACAA GCTGAAAGAT GCTGAGATCT
 TTAAATAAGT CTCTCCTGGC TTAGTCATAT CAGCATCACT CATAGAATCC CAGAATCAAT
 GGGCTTATAG ACATCCTGTG GCATGACCAC TTGTTTTTAT CTGATAAAGC CACAATCCAG
 AGAAGGAGAC CAATTAGCCC ATGGTCACAG AGAAAAACTT CCCAGCTTTG CTGGCTGAGT
 GTTCACATAG GCTTCTGAGT GTTGGAAGCA TGTCTCTACT TCAGGAAGGA GTTGTCATCT
 CTGGAAAGTG ACTTGGCCTT TGCATATATC AGACAGTAAA CACAGGGAAG GTGAAGGGTA
 TGAATCAGAA AAGAAAGTCT TCTGGAAAGT GA
 Y
 AGCTGTCTGC CTCCCACTTC TGCTCTGTCA AGAAAAGATG CCCTCCCCCG CTGGGAGGTC
 AGTGCTGGCG TGAGAGAAGT GAGTGGAAAT TCCCACTCTG AGGAGGCAGC TTTGGAAGTT
 CCCAGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010799 AC021520.2 Y18933
dbSNP Blast Analysis
OMIM
607948

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs1024611 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss1358438929EAS 1008AF 0.546599980.45339999
EUR 1006AF 0.316100000.68390000
AFR 1322AF 0.227700010.77230000
AMR 694AF 0.485600020.51440001
SAS 978AF 0.321100000.67889994
ss1489359SC_12_AAsian 24IG0.500000000.416666660.083333341.000000000.708333310.29166666
SC_12_AAAfrican American 24IG 0.250000000.750000001.000000000.125000000.87500000
HapMap-CEUEuropean 226IG0.053097340.504424750.442477880.050043000.305309740.69469029
HapMap-HCBAsian 86IG0.302325580.534883740.162790700.583882000.569767420.43023255
HapMap-JPTAsian 172IG0.372093020.511627910.116279070.402784000.627906980.37209302
HapMap-YRISub-Saharan African 226IG0.053097340.300884960.646017670.479500000.203539820.79646015
HAPMAP-ASW 98IG0.040816330.387755100.571428600.583882000.234693880.76530612
HAPMAP-CHBAsian 82IG0.487804890.390243890.121951220.527089000.682926830.31707317
HAPMAP-CHD 168IG0.345238090.440476180.214285720.342782000.565476180.43452382
HAPMAP-GIH 176IG0.068181820.375000000.556818191.000000000.255681810.74431819
HAPMAP-LWK 180IG0.055555560.422222230.522222220.479500000.266666680.73333335
HAPMAP-MEX 100IG0.239999990.440000000.319999990.438578000.460000010.54000002
HAPMAP-MKK 286IG0.041958040.321678310.636363631.000000000.202797200.79720283
HAPMAP-TSI 176IG0.056818180.465909090.477272720.250592000.289772720.71022725
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss161828397ENSEMBL_celera 4IG1.00000000 1.00000000
ss171335012PGP 2IG 1.00000000 0.500000000.50000000
ss202402947BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss227524994pilot_1_YRI_low_coverage_panel 118AF 0.220338990.77966100
ss237226918pilot_1_CEU_low_coverage_panel 120AF 0.316666660.68333334
ss243528977pilot_1_CHB+JPT_low_coverage_panel 120AF 0.600000020.40000001
ss4323363POPU1 40AF 0.250000000.75000000
ss5112028PGA-AFRICAN-PANELAfrican American 40IG0.050000000.200000000.750000000.342782000.150000010.85000002
PGA-EUROPEAN-PANELEuropean 40IG 0.300000010.699999990.751830000.150000010.85000002

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.463+/-0.1310000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNYES

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