dbSNP Short Genetic Variations
Welcome to the Reference SNP (rs) Report
All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.
Reference SNP (rs) Report
This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.
rs7754561
Current Build 156
Released September 21, 2022
- Organism
- Homo sapiens
- Position
-
chr6:131891554 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
- Alleles
- A>G
- Variation Type
- SNV Single Nucleotide Variation
- Frequency
-
G=0.482020 (127586/264690, TOPMED)G=0.309678 (73037/235848, ALFA)G=0.441992 (61870/139980, GnomAD) (+ 20 more)
- Clinical Significance
- Reported in ClinVar
- Gene : Consequence
- ENPP1 : 3 Prime UTR Variant
- Publications
- 16 citations
- Genomic View
- See rs on genome
ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.
| Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|
| Total | Global | 235848 | A=0.690322 | G=0.309678 |
| European | Sub | 205064 | A=0.732800 | G=0.267200 |
| African | Sub | 10554 | A=0.21868 | G=0.78132 |
| African Others | Sub | 380 | A=0.118 | G=0.882 |
| African American | Sub | 10174 | A=0.22243 | G=0.77757 |
| Asian | Sub | 3824 | A=0.3664 | G=0.6336 |
| East Asian | Sub | 3092 | A=0.3577 | G=0.6423 |
| Other Asian | Sub | 732 | A=0.403 | G=0.597 |
| Latin American 1 | Sub | 1038 | A=0.5299 | G=0.4701 |
| Latin American 2 | Sub | 6626 | A=0.4760 | G=0.5240 |
| South Asian | Sub | 366 | A=0.522 | G=0.478 |
| Other | Sub | 8376 | A=0.5893 | G=0.4107 |
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
Download| Study | Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| TopMed | Global | Study-wide | 264690 | A=0.517980 | G=0.482020 |
| Allele Frequency Aggregator | Total | Global | 235848 | A=0.690322 | G=0.309678 |
| Allele Frequency Aggregator | European | Sub | 205064 | A=0.732800 | G=0.267200 |
| Allele Frequency Aggregator | African | Sub | 10554 | A=0.21868 | G=0.78132 |
| Allele Frequency Aggregator | Other | Sub | 8376 | A=0.5893 | G=0.4107 |
| Allele Frequency Aggregator | Latin American 2 | Sub | 6626 | A=0.4760 | G=0.5240 |
| Allele Frequency Aggregator | Asian | Sub | 3824 | A=0.3664 | G=0.6336 |
| Allele Frequency Aggregator | Latin American 1 | Sub | 1038 | A=0.5299 | G=0.4701 |
| Allele Frequency Aggregator | South Asian | Sub | 366 | A=0.522 | G=0.478 |
| gnomAD - Genomes | Global | Study-wide | 139980 | A=0.558008 | G=0.441992 |
| gnomAD - Genomes | European | Sub | 75828 | A=0.76279 | G=0.23721 |
| gnomAD - Genomes | African | Sub | 41928 | A=0.21477 | G=0.78523 |
| gnomAD - Genomes | American | Sub | 13630 | A=0.51012 | G=0.48988 |
| gnomAD - Genomes | Ashkenazi Jewish | Sub | 3322 | A=0.5725 | G=0.4275 |
| gnomAD - Genomes | East Asian | Sub | 3122 | A=0.4071 | G=0.5929 |
| gnomAD - Genomes | Other | Sub | 2150 | A=0.5293 | G=0.4707 |
| The PAGE Study | Global | Study-wide | 78692 | A=0.36479 | G=0.63521 |
| The PAGE Study | AfricanAmerican | Sub | 32508 | A=0.23736 | G=0.76264 |
| The PAGE Study | Mexican | Sub | 10810 | A=0.48529 | G=0.51471 |
| The PAGE Study | Asian | Sub | 8318 | A=0.3801 | G=0.6199 |
| The PAGE Study | PuertoRican | Sub | 7918 | A=0.4654 | G=0.5346 |
| The PAGE Study | NativeHawaiian | Sub | 4534 | A=0.3677 | G=0.6323 |
| The PAGE Study | Cuban | Sub | 4230 | A=0.5489 | G=0.4511 |
| The PAGE Study | Dominican | Sub | 3828 | A=0.4261 | G=0.5739 |
| The PAGE Study | CentralAmerican | Sub | 2450 | A=0.4665 | G=0.5335 |
| The PAGE Study | SouthAmerican | Sub | 1982 | A=0.4763 | G=0.5237 |
| The PAGE Study | NativeAmerican | Sub | 1258 | A=0.5843 | G=0.4157 |
| The PAGE Study | SouthAsian | Sub | 856 | A=0.532 | G=0.468 |
| 14KJPN | JAPANESE | Study-wide | 28258 | A=0.36765 | G=0.63235 |
| 8.3KJPN | JAPANESE | Study-wide | 16760 | A=0.37118 | G=0.62882 |
| 1000Genomes_30x | Global | Study-wide | 6404 | A=0.4329 | G=0.5671 |
| 1000Genomes_30x | African | Sub | 1786 | A=0.1170 | G=0.8830 |
| 1000Genomes_30x | Europe | Sub | 1266 | A=0.7235 | G=0.2765 |
| 1000Genomes_30x | South Asian | Sub | 1202 | A=0.5408 | G=0.4592 |
| 1000Genomes_30x | East Asian | Sub | 1170 | A=0.4470 | G=0.5530 |
| 1000Genomes_30x | American | Sub | 980 | A=0.484 | G=0.516 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.4453 | G=0.5547 |
| 1000Genomes | African | Sub | 1322 | A=0.1256 | G=0.8744 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.4484 | G=0.5516 |
| 1000Genomes | Europe | Sub | 1006 | A=0.7306 | G=0.2694 |
| 1000Genomes | South Asian | Sub | 978 | A=0.543 | G=0.457 |
| 1000Genomes | American | Sub | 694 | A=0.499 | G=0.501 |
| Genetic variation in the Estonian population | Estonian | Study-wide | 4480 | A=0.7808 | G=0.2192 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.7769 | G=0.2231 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.7691 | G=0.2309 |
| KOREAN population from KRGDB | KOREAN | Study-wide | 2930 | A=0.3352 | G=0.6648 |
| HapMap | Global | Study-wide | 1892 | A=0.3927 | G=0.6073 |
| HapMap | American | Sub | 770 | A=0.545 | G=0.455 |
| HapMap | African | Sub | 692 | A=0.150 | G=0.850 |
| HapMap | Asian | Sub | 254 | A=0.406 | G=0.594 |
| HapMap | Europe | Sub | 176 | A=0.659 | G=0.341 |
| Genome-wide autozygosity in Daghestan | Global | Study-wide | 1128 | A=0.5381 | G=0.4619 |
| Genome-wide autozygosity in Daghestan | Daghestan | Sub | 624 | A=0.527 | G=0.473 |
| Genome-wide autozygosity in Daghestan | Near_East | Sub | 144 | A=0.465 | G=0.535 |
| Genome-wide autozygosity in Daghestan | Central Asia | Sub | 122 | A=0.475 | G=0.525 |
| Genome-wide autozygosity in Daghestan | Europe | Sub | 108 | A=0.722 | G=0.278 |
| Genome-wide autozygosity in Daghestan | South Asian | Sub | 94 | A=0.60 | G=0.40 |
| Genome-wide autozygosity in Daghestan | Caucasus | Sub | 36 | A=0.53 | G=0.47 |
| Genome of the Netherlands Release 5 | Genome of the Netherlands | Study-wide | 998 | A=0.797 | G=0.203 |
| CNV burdens in cranial meningiomas | Global | Study-wide | 780 | A=0.422 | G=0.578 |
| CNV burdens in cranial meningiomas | CRM | Sub | 780 | A=0.422 | G=0.578 |
| Northern Sweden | ACPOP | Study-wide | 600 | A=0.802 | G=0.198 |
| SGDP_PRJ | Global | Study-wide | 434 | A=0.270 | G=0.730 |
| Qatari | Global | Study-wide | 216 | A=0.449 | G=0.551 |
| A Vietnamese Genetic Variation Database | Global | Study-wide | 216 | A=0.509 | G=0.491 |
| Ancient Sardinia genome-wide 1240k capture data generation and analysis | Global | Study-wide | 54 | A=0.59 | G=0.41 |
| The Danish reference pan genome | Danish | Study-wide | 40 | A=0.93 | G=0.07 |
| Siberian | Global | Study-wide | 40 | A=0.33 | G=0.68 |
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.
| Sequence name | Change |
|---|---|
| GRCh38.p14 chr 6 | NC_000006.12:g.131891554A>G |
| GRCh37.p13 chr 6 | NC_000006.11:g.132212694A>G |
| ENPP1 RefSeqGene (LRG_1288) | NG_008206.1:g.88539A>G |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| ENPP1 transcript | NM_006208.3:c.*1043= | N/A | 3 Prime UTR Variant |
Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.
| ClinVar Accession | Disease Names | Clinical Significance |
|---|---|---|
| RCV000022719.3 | Obesity | Risk-Factor |
| RCV000280683.3 | Arterial calcification, generalized, of infancy, 1 | Benign |
| RCV000372927.3 | Hypophosphatemic rickets, autosomal recessive, 2 | Benign |
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".
| Placement | A= | G |
|---|---|---|
| GRCh38.p14 chr 6 | NC_000006.12:g.131891554= | NC_000006.12:g.131891554A>G |
| GRCh37.p13 chr 6 | NC_000006.11:g.132212694= | NC_000006.11:g.132212694A>G |
| ENPP1 RefSeqGene (LRG_1288) | NG_008206.1:g.88539= | NG_008206.1:g.88539A>G |
| ENPP1 transcript | NM_006208.3:c.*1043= | NM_006208.3:c.*1043A>G |
| ENPP1 transcript | NM_006208.2:c.*1043= | NM_006208.2:c.*1043A>G |
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
| No | Submitter | Submission ID | Date (Build) |
|---|---|---|---|
| 1 | WI_SSAHASNP | ss11800877 | Jul 11, 2003 (116) |
| 2 | SC_SNP | ss12883960 | Dec 05, 2003 (119) |
| 3 | SC_SNP | ss15729508 | Feb 27, 2004 (120) |
| 4 | CSHL-HAPMAP | ss17910393 | Feb 27, 2004 (120) |
| 5 | SSAHASNP | ss22493574 | Apr 05, 2004 (121) |
| 6 | ABI | ss42828901 | Mar 14, 2006 (126) |
| 7 | ILLUMINA | ss75127298 | Dec 07, 2007 (129) |
| 8 | HGSV | ss78895246 | Dec 07, 2007 (129) |
| 9 | HGSV | ss82599960 | Dec 15, 2007 (130) |
| 10 | HUMANGENOME_JCVI | ss98432208 | Feb 05, 2009 (130) |
| 11 | BGI | ss104361033 | Dec 01, 2009 (131) |
| 12 | 1000GENOMES | ss115123281 | Jan 25, 2009 (130) |
| 13 | ILLUMINA-UK | ss116721582 | Feb 14, 2009 (130) |
| 14 | KRIBB_YJKIM | ss119567438 | Dec 01, 2009 (131) |
| 15 | ENSEMBL | ss133857805 | Dec 01, 2009 (131) |
| 16 | GMI | ss157601975 | Dec 01, 2009 (131) |
| 17 | ILLUMINA | ss160911073 | Dec 01, 2009 (131) |
| 18 | COMPLETE_GENOMICS | ss162823087 | Jul 04, 2010 (132) |
| 19 | COMPLETE_GENOMICS | ss164575421 | Jul 04, 2010 (132) |
| 20 | ILLUMINA | ss174531451 | Jul 04, 2010 (132) |
| 21 | BUSHMAN | ss202433548 | Jul 04, 2010 (132) |
| 22 | BCM-HGSC-SUB | ss207679593 | Jul 04, 2010 (132) |
| 23 | 1000GENOMES | ss222683626 | Jul 14, 2010 (132) |
| 24 | 1000GENOMES | ss233690240 | Jul 15, 2010 (132) |
| 25 | 1000GENOMES | ss240702616 | Jul 15, 2010 (132) |
| 26 | GMI | ss279027907 | May 04, 2012 (137) |
| 27 | PJP | ss293727466 | May 09, 2011 (134) |
| 28 | ILLUMINA | ss481664576 | May 04, 2012 (137) |
| 29 | ILLUMINA | ss481695266 | May 04, 2012 (137) |
| 30 | ILLUMINA | ss482662172 | Sep 08, 2015 (146) |
| 31 | ILLUMINA | ss485626917 | May 04, 2012 (137) |
| 32 | ILLUMINA | ss537509988 | Sep 08, 2015 (146) |
| 33 | TISHKOFF | ss559534383 | Apr 25, 2013 (138) |
| 34 | SSMP | ss653789199 | Apr 25, 2013 (138) |
| 35 | ILLUMINA | ss778984991 | Sep 08, 2015 (146) |
| 36 | ILLUMINA | ss783259073 | Sep 08, 2015 (146) |
| 37 | ILLUMINA | ss784212542 | Sep 08, 2015 (146) |
| 38 | ILLUMINA | ss832519963 | Sep 08, 2015 (146) |
| 39 | ILLUMINA | ss834447186 | Sep 08, 2015 (146) |
| 40 | EVA-GONL | ss983519004 | Aug 21, 2014 (142) |
| 41 | JMKIDD_LAB | ss1074047716 | Aug 21, 2014 (142) |
| 42 | 1000GENOMES | ss1322342374 | Aug 21, 2014 (142) |
| 43 | HAMMER_LAB | ss1397471434 | Sep 08, 2015 (146) |
| 44 | DDI | ss1430900720 | Apr 01, 2015 (144) |
| 45 | OMIM-CURATED-RECORDS | ss1505810997 | Dec 08, 2014 (142) |
| 46 | EVA_GENOME_DK | ss1581904667 | Apr 01, 2015 (144) |
| 47 | EVA_DECODE | ss1593087819 | Apr 01, 2015 (144) |
| 48 | EVA_UK10K_ALSPAC | ss1616731385 | Apr 01, 2015 (144) |
| 49 | EVA_UK10K_TWINSUK | ss1659725418 | Apr 01, 2015 (144) |
| 50 | EVA_SVP | ss1712901133 | Apr 01, 2015 (144) |
| 51 | ILLUMINA | ss1752601993 | Sep 08, 2015 (146) |
| 52 | HAMMER_LAB | ss1804678991 | Sep 08, 2015 (146) |
| 53 | WEILL_CORNELL_DGM | ss1926762676 | Feb 12, 2016 (147) |
| 54 | ILLUMINA | ss1946191552 | Feb 12, 2016 (147) |
| 55 | ILLUMINA | ss1958951485 | Feb 12, 2016 (147) |
| 56 | GENOMED | ss1970530144 | Jul 19, 2016 (147) |
| 57 | JJLAB | ss2024038607 | Sep 14, 2016 (149) |
| 58 | ILLUMINA | ss2095190013 | Dec 20, 2016 (150) |
| 59 | USC_VALOUEV | ss2152232019 | Dec 20, 2016 (150) |
| 60 | HUMAN_LONGEVITY | ss2288536795 | Dec 20, 2016 (150) |
| 61 | SYSTEMSBIOZJU | ss2626513278 | Nov 08, 2017 (151) |
| 62 | ILLUMINA | ss2634512992 | Nov 08, 2017 (151) |
| 63 | GRF | ss2707863152 | Nov 08, 2017 (151) |
| 64 | GNOMAD | ss2845325230 | Nov 08, 2017 (151) |
| 65 | SWEGEN | ss2999980274 | Nov 08, 2017 (151) |
| 66 | ILLUMINA | ss3022667559 | Nov 08, 2017 (151) |
| 67 | BIOINF_KMB_FNS_UNIBA | ss3025812551 | Nov 08, 2017 (151) |
| 68 | CSHL | ss3347237071 | Nov 08, 2017 (151) |
| 69 | ILLUMINA | ss3625914013 | Oct 12, 2018 (152) |
| 70 | ILLUMINA | ss3629658934 | Oct 12, 2018 (152) |
| 71 | ILLUMINA | ss3632426159 | Oct 12, 2018 (152) |
| 72 | ILLUMINA | ss3633438030 | Oct 12, 2018 (152) |
| 73 | ILLUMINA | ss3634161632 | Oct 12, 2018 (152) |
| 74 | ILLUMINA | ss3635088808 | Oct 12, 2018 (152) |
| 75 | ILLUMINA | ss3635842075 | Oct 12, 2018 (152) |
| 76 | ILLUMINA | ss3636814168 | Oct 12, 2018 (152) |
| 77 | ILLUMINA | ss3637594941 | Oct 12, 2018 (152) |
| 78 | ILLUMINA | ss3638657855 | Oct 12, 2018 (152) |
| 79 | ILLUMINA | ss3640796108 | Oct 12, 2018 (152) |
| 80 | ILLUMINA | ss3641202298 | Oct 12, 2018 (152) |
| 81 | ILLUMINA | ss3641499583 | Oct 12, 2018 (152) |
| 82 | ILLUMINA | ss3643596940 | Oct 12, 2018 (152) |
| 83 | ILLUMINA | ss3644924674 | Oct 12, 2018 (152) |
| 84 | OMUKHERJEE_ADBS | ss3646344068 | Oct 12, 2018 (152) |
| 85 | URBANLAB | ss3648475699 | Oct 12, 2018 (152) |
| 86 | ILLUMINA | ss3653190191 | Oct 12, 2018 (152) |
| 87 | EGCUT_WGS | ss3667897851 | Jul 13, 2019 (153) |
| 88 | EVA_DECODE | ss3718311993 | Jul 13, 2019 (153) |
| 89 | ILLUMINA | ss3726385326 | Jul 13, 2019 (153) |
| 90 | ACPOP | ss3733999087 | Jul 13, 2019 (153) |
| 91 | ILLUMINA | ss3744278906 | Jul 13, 2019 (153) |
| 92 | ILLUMINA | ss3745388753 | Jul 13, 2019 (153) |
| 93 | EVA | ss3765691312 | Jul 13, 2019 (153) |
| 94 | PAGE_CC | ss3771323769 | Jul 13, 2019 (153) |
| 95 | ILLUMINA | ss3772882121 | Jul 13, 2019 (153) |
| 96 | KHV_HUMAN_GENOMES | ss3808848004 | Jul 13, 2019 (153) |
| 97 | EVA | ss3825707467 | Apr 26, 2020 (154) |
| 98 | EVA | ss3830201185 | Apr 26, 2020 (154) |
| 99 | EVA | ss3838588341 | Apr 26, 2020 (154) |
| 100 | EVA | ss3844038396 | Apr 26, 2020 (154) |
| 101 | SGDP_PRJ | ss3865744475 | Apr 26, 2020 (154) |
| 102 | KRGDB | ss3912702758 | Apr 26, 2020 (154) |
| 103 | FSA-LAB | ss3984348948 | Apr 26, 2021 (155) |
| 104 | FSA-LAB | ss3984348949 | Apr 26, 2021 (155) |
| 105 | EVA | ss3984576787 | Apr 26, 2021 (155) |
| 106 | EVA | ss3985252927 | Apr 26, 2021 (155) |
| 107 | EVA | ss3986037341 | Apr 26, 2021 (155) |
| 108 | EVA | ss4017300307 | Apr 26, 2021 (155) |
| 109 | TOPMED | ss4722482100 | Apr 26, 2021 (155) |
| 110 | TOMMO_GENOMICS | ss5180011016 | Apr 26, 2021 (155) |
| 111 | 1000G_HIGH_COVERAGE | ss5270411251 | Oct 13, 2022 (156) |
| 112 | EVA | ss5315191597 | Oct 13, 2022 (156) |
| 113 | EVA | ss5369122872 | Oct 13, 2022 (156) |
| 114 | HUGCELL_USP | ss5467846591 | Oct 13, 2022 (156) |
| 115 | EVA | ss5508715911 | Oct 13, 2022 (156) |
| 116 | 1000G_HIGH_COVERAGE | ss5557388707 | Oct 13, 2022 (156) |
| 117 | SANFORD_IMAGENETICS | ss5624642545 | Oct 13, 2022 (156) |
| 118 | SANFORD_IMAGENETICS | ss5641526175 | Oct 13, 2022 (156) |
| 119 | TOMMO_GENOMICS | ss5718917645 | Oct 13, 2022 (156) |
| 120 | EVA | ss5799702856 | Oct 13, 2022 (156) |
| 121 | YY_MCH | ss5807974279 | Oct 13, 2022 (156) |
| 122 | EVA | ss5843012469 | Oct 13, 2022 (156) |
| 123 | EVA | ss5847303740 | Oct 13, 2022 (156) |
| 124 | EVA | ss5848113729 | Oct 13, 2022 (156) |
| 125 | EVA | ss5855590257 | Oct 13, 2022 (156) |
| 126 | EVA | ss5886024803 | Oct 13, 2022 (156) |
| 127 | EVA | ss5970232162 | Oct 13, 2022 (156) |
| 128 | EVA | ss5979802732 | Oct 13, 2022 (156) |
| 129 | 1000Genomes | NC_000006.11 - 132212694 | Oct 12, 2018 (152) |
| 130 | 1000Genomes_30x | NC_000006.12 - 131891554 | Oct 13, 2022 (156) |
| 131 | The Avon Longitudinal Study of Parents and Children | NC_000006.11 - 132212694 | Oct 12, 2018 (152) |
| 132 | Genome-wide autozygosity in Daghestan | NC_000006.10 - 132254387 | Apr 26, 2020 (154) |
| 133 | Genetic variation in the Estonian population | NC_000006.11 - 132212694 | Oct 12, 2018 (152) |
| 134 | The Danish reference pan genome | NC_000006.11 - 132212694 | Apr 26, 2020 (154) |
| 135 | gnomAD - Genomes | NC_000006.12 - 131891554 | Apr 26, 2021 (155) |
| 136 | Genome of the Netherlands Release 5 | NC_000006.11 - 132212694 | Apr 26, 2020 (154) |
| 137 | HapMap | NC_000006.12 - 131891554 | Apr 26, 2020 (154) |
| 138 | KOREAN population from KRGDB | NC_000006.11 - 132212694 | Apr 26, 2020 (154) |
| 139 | Northern Sweden | NC_000006.11 - 132212694 | Jul 13, 2019 (153) |
| 140 | The PAGE Study | NC_000006.12 - 131891554 | Jul 13, 2019 (153) |
| 141 | Ancient Sardinia genome-wide 1240k capture data generation and analysis | NC_000006.11 - 132212694 | Apr 26, 2021 (155) |
| 142 | CNV burdens in cranial meningiomas | NC_000006.11 - 132212694 | Apr 26, 2021 (155) |
| 143 | Qatari | NC_000006.11 - 132212694 | Apr 26, 2020 (154) |
| 144 | SGDP_PRJ | NC_000006.11 - 132212694 | Apr 26, 2020 (154) |
| 145 | Siberian | NC_000006.11 - 132212694 | Apr 26, 2020 (154) |
| 146 | 8.3KJPN | NC_000006.11 - 132212694 | Apr 26, 2021 (155) |
| 147 | 14KJPN | NC_000006.12 - 131891554 | Oct 13, 2022 (156) |
| 148 | TopMed | NC_000006.12 - 131891554 | Apr 26, 2021 (155) |
| 149 | UK 10K study - Twins | NC_000006.11 - 132212694 | Oct 12, 2018 (152) |
| 150 | A Vietnamese Genetic Variation Database | NC_000006.11 - 132212694 | Jul 13, 2019 (153) |
| 151 | ALFA | NC_000006.12 - 131891554 | Apr 26, 2021 (155) |
| 152 | ClinVar | RCV000022719.3 | Oct 12, 2018 (152) |
| 153 | ClinVar | RCV000280683.3 | Oct 13, 2022 (156) |
| 154 | ClinVar | RCV000372927.3 | Oct 13, 2022 (156) |
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).
| Associated ID | History Updated (Build) |
|---|---|
| rs59063684 | May 25, 2008 (130) |
| Submission IDs | Observation SPDI | Canonical SPDI | Source RSIDs |
|---|---|---|---|
| ss78895246, ss82599960 | NC_000006.9:132254386:A:G | NC_000006.12:131891553:A:G | (self) |
| 445852, ss115123281, ss116721582, ss162823087, ss164575421, ss202433548, ss207679593, ss279027907, ss293727466, ss481664576, ss1397471434, ss1593087819, ss1712901133, ss3643596940 | NC_000006.10:132254386:A:G | NC_000006.12:131891553:A:G | (self) |
| 34214202, 19066383, 13636099, 8069606, 8493367, 19880152, 7283952, 478854, 126198, 8804606, 17761455, 4748373, 37980323, 19066383, 4244869, ss222683626, ss233690240, ss240702616, ss481695266, ss482662172, ss485626917, ss537509988, ss559534383, ss653789199, ss778984991, ss783259073, ss784212542, ss832519963, ss834447186, ss983519004, ss1074047716, ss1322342374, ss1430900720, ss1581904667, ss1616731385, ss1659725418, ss1752601993, ss1804678991, ss1926762676, ss1946191552, ss1958951485, ss1970530144, ss2024038607, ss2095190013, ss2152232019, ss2626513278, ss2634512992, ss2707863152, ss2845325230, ss2999980274, ss3022667559, ss3347237071, ss3625914013, ss3629658934, ss3632426159, ss3633438030, ss3634161632, ss3635088808, ss3635842075, ss3636814168, ss3637594941, ss3638657855, ss3640796108, ss3641202298, ss3641499583, ss3644924674, ss3646344068, ss3653190191, ss3667897851, ss3733999087, ss3744278906, ss3745388753, ss3765691312, ss3772882121, ss3825707467, ss3830201185, ss3838588341, ss3865744475, ss3912702758, ss3984348948, ss3984348949, ss3984576787, ss3985252927, ss3986037341, ss4017300307, ss5180011016, ss5315191597, ss5369122872, ss5508715911, ss5624642545, ss5641526175, ss5799702856, ss5843012469, ss5847303740, ss5848113729, ss5970232162, ss5979802732 | NC_000006.11:132212693:A:G | NC_000006.12:131891553:A:G | (self) |
| RCV000022719.3, RCV000280683.3, RCV000372927.3, 44914642, 241629431, 3252495, 545238, 52754749, 559859658, 7912100773, ss1505810997, ss2288536795, ss3025812551, ss3648475699, ss3718311993, ss3726385326, ss3771323769, ss3808848004, ss3844038396, ss4722482100, ss5270411251, ss5467846591, ss5557388707, ss5718917645, ss5807974279, ss5855590257, ss5886024803 | NC_000006.12:131891553:A:G | NC_000006.12:131891553:A:G | (self) |
| ss11800877, ss12883960 | NT_025741.12:36317122:A:G | NC_000006.12:131891553:A:G | (self) |
| ss15729508, ss17910393, ss22493574 | NT_025741.13:36317122:A:G | NC_000006.12:131891553:A:G | (self) |
| ss42828901, ss75127298, ss98432208, ss104361033, ss119567438, ss133857805, ss157601975, ss160911073, ss174531451 | NT_025741.15:36382150:A:G | NC_000006.12:131891553:A:G | (self) |
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.
| PMID | Title | Author | Year | Journal |
|---|---|---|---|---|
| 14988267 | A genome-wide scan for childhood obesity-associated traits in French families shows significant linkage on chromosome 6q22.31-q23.2. | Meyre D et al. | 2004 | Diabetes |
| 15677494 | Increased hepatic levels of the insulin receptor inhibitor, PC-1/NPP1, induce insulin resistance and glucose intolerance. | Dong H et al. | 2005 | Diabetes |
| 17065359 | Common variants in the ENPP1 gene are not reproducibly associated with diabetes or obesity. | Lyon HN et al. | 2006 | Diabetes |
| 17704904 | ENPP1 K121Q polymorphism and obesity, hyperglycaemia and type 2 diabetes in the prospective DESIR Study. | Meyre D et al. | 2007 | Diabetologia |
| 18304332 | No evidence for association between BMI and 10 candidate genes at ages 4, 7 and 10 in a large UK sample of twins. | Haworth CM et al. | 2008 | BMC medical genetics |
| 18426862 | Haplotype structure of the ENPP1 Gene and Nominal Association of the K121Q missense single nucleotide polymorphism with glycemic traits in the Framingham Heart Study. | Stolerman ES et al. | 2008 | Diabetes |
| 18678618 | Comprehensive association study of type 2 diabetes and related quantitative traits with 222 candidate genes. | Gaulton KJ et al. | 2008 | Diabetes |
| 18719658 | Gender differences in the relationship of ENPP1/PC-1 variants to obesity in a Turkish population. | Tanyolaç S et al. | 2008 | Obesity (Silver Spring, Md.) |
| 19593725 | Association of maternally inherited GNAS alleles with African-American male birth weight. | Adkins RM et al. | 2010 | International journal of pediatric obesity |
| 19656007 | Genetic variants of the ENPP1/PC-1 gene are associated with hypertriglyceridemia in male subjects. | Tanyolaç S et al. | 2009 | Metabolic syndrome and related disorders |
| 19888898 | Hip geometry variation is associated with bone mineralization pathway gene variants: The Framingham Study. | Cheung CL et al. | 2010 | Journal of bone and mineral research |
| 20981035 | The ENPP1 K121Q polymorphism is not associated with type 2 diabetes or obesity in the Chinese Han population. | Zhao T et al. | 2011 | Journal of human genetics |
| 23168575 | Candidate gene linkage approach to identify DNA variants that predispose to preterm birth. | Bream EN et al. | 2013 | Pediatric research |
| 28415752 | Correlation between facial morphology and gene polymorphisms in the Uygur youth population. | He H et al. | 2017 | Oncotarget |
| 29958952 | Association and in silico studies of ENPP1 gene variants with type 2 diabetes mellitus in a Northern Iranian population. | Sharafshah A et al. | 2018 | Gene |
| 31902046 | Single locus and haplotype association of ENPP1 gene variants with the development of retinopathy among type 2 diabetic patients. | Gohari-Lasaki S et al. | 2020 | International ophthalmology |
The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.
Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.