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Reference SNP (refSNP) Cluster Report: rs7077164                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.3854/1930 (1000 Genomes)
T=0.3687/46296 (TOPMED)
HGVS Names
  • CM000672.2:g.69823442C>T
  • NC_000010.10:g.71583198C>T
  • NC_000010.11:g.69823442C>T
  • NG_046344.1:g.26555C>T
  • NM_001130103.1:c.364+1004C>T
  • NM_001320951.1:c.364+1004C>T
  • NM_080798.3:c.364+1004C>T
  • NM_080800.3:c.364+1004C>T
  • NM_080801.3:c.364+1004C>T
  • NM_080802.3:c.364+1004C>T
  • NM_080805.3:c.364+1004C>T
  • XR_001747024.1:n.903+1004C>T
  • XR_946039.2:n.-1119G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss280667708 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7077164 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss10599286BCM_SSAHASNP|chr10.NT_008583.15_20134346fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg06/29/0310/25/06116Genomicunknown
ss15563306SC_SNP|NT_008583.16_20134353fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg11/17/0311/22/03120Genomicunknown
ss16503415CSHL-HAPMAP|CSHL-HuAA-200402.chr10.NT_008583.16_20134353fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg02/17/0403/04/04120Genomicunknown
ss24562896PERLEGEN|afd2265677byFreqfwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg08/10/0409/13/04123Genomicunknown
ss38541957ABI|hCV2948104byFreqfwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg07/15/0511/02/06126Genomicunknown
ss66593139ILLUMINA|HumanHap300v1.1_rs7077164fwd/TC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg11/09/0611/09/06127Genomicunknown
ss67537096ILLUMINA|HumanHap550v1.1_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg11/14/0611/14/06127Genomicunknown
ss67908272ILLUMINA|HumanHap650Yv1.0_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg11/14/0611/14/06127Genomicunknown
ss70906405ILLUMINA|HumanHap550v3.0__rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg04/20/0703/31/08130Genomicunknown
ss71502994ILLUMINA|HumanHap650Yv3.0_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg04/23/0704/23/07127Genomicunknown
ss74917478ILLUMINA|ILMN_Human_1M_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg08/28/0708/29/07129Genomicunknown
ss78411832HGSV|Cor12878_SNV_20070510.chr10_71253204fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg10/17/0710/19/07129Genomicunknown
ss79244692ILLUMINA|HumanHap300v2.0_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg04/18/0711/18/07130Genomicunknown
ss84609372KRIBB_YJKIM|KHS757438fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg12/04/0712/07/07130Genomicunknown
ss97660756HUMANGENOME_JCVI|1103649973143fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg03/29/0803/29/08130Genomicunknown
ss102889653BGI|BGI_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcrtgtgg06/05/0806/17/09131Genomicunknown
ss1095446391000GENOMES|CEU.trio.12.15.2008_2377233_chr10_71253204fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg12/16/0812/16/08130Genomicunknown
ss1134390871000GENOMES|NA19240_2008_12_16_2146333_chr10_71253204fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg12/18/0812/18/08130Genomicunknown
ss122683164ILLUMINA|HumanCNV370v1_C_rs7077164fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg04/14/0904/15/09131Genomicunknown
ss144278381ENSEMBL|ENSSNP8940321fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg12/08/0810/20/09131Genomicunknown
ss154402434ILLUMINA|Human610_Quadv1_B_rs7077164-128_B_F_1501839263fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg06/18/0906/20/09131Genomicunknown
ss155202270GMI|GMI_SNP_42787206fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg06/24/0906/24/09131Genomicunknown
ss159577703ILLUMINA|Human660W-Quad_v1_A_rs7077164-128_B_F_1501839263fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg07/06/0907/07/09131Genomicunknown
ss160843780ILLUMINA|HumanOmni1-Quad_v1-0_B_rs7077164-128_B_F_1501839263fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg08/04/0910/04/09131Genomicunknown
ss168534617COMPLETE_GENOMICS|NA07022_36_chr10_71253204fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg09/30/0910/01/09132Genomicunknown
ss170362240COMPLETE_GENOMICS|NA19240_36_chr10_71253204fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg10/01/0910/04/09132Genomicunknown
ss172241355ILLUMINA|HumanCNV370-Quadv3_C_rs7077164-128_B_F_1501839263fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg10/01/0910/04/09132Genomicunknown
ss174230537ILLUMINA|Human1M-Duov3_B_rs7077164-128_B_F_1501839263fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcatgtgg10/01/0910/04/09132Genomicunknown
ss201675828BUSHMAN|BUSHMAN-chr10-71253203fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg02/16/1003/08/10132Genomicunknown
ss2247935671000GENOMES|pilot_1_YRI_6603250_chr10_71253204fwd/C/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg04/22/1004/22/10132Genomicunknown
ss2352265041000GENOMES|pilot_1_CEU_4831133_chr10_71253204fwd/C/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg05/01/1005/01/10132Genomicunknown
ss2419223271000GENOMES|pilot_1_CHB+JPT_3807404_chr10_71253204fwd/C/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg05/01/1005/01/10132Genomicunknown
ss280667708GMI|GMI_AK_SNP_4988043fwd/C/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg12/16/1012/16/10137Genomicunknown
ss286214369GMI|GMI_NA10851_SNP_2227154fwd/C/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg12/17/1012/17/10138Genomicunknown
ss290865258PJP|SNP_371616_chr10_71253204fwd/C/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg01/21/1101/21/11134Genomicunknown
ss481453346ILLUMINA|HumanOmni2.5-4v1_B_rs7077164-128_B_F_1670036863fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg01/30/1210/28/16137Genomicunknown
ss481481163ILLUMINA|HumanOmniExpress-12v1_C_rs7077164-131_B_F_1857152916fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg01/30/1210/27/16137Genomicunknown
ss482460815ILLUMINA|HumanOmni1-Quad_v1-0_C_rs7077164-131_B_F_1865769366fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg01/30/1208/28/15146Genomicunknown
ss485521828ILLUMINA|HumanOmni2.5-4v1_D_rs7077164-131_B_F_1857152916fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg01/30/1210/27/16137Genomicunknown
ss491436290EXOME_CHIP|.GWAS._152516_chr_10_71583198fwd/BC/Tacatttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcgtgtgg03/05/1203/05/12137Genomicunknown
ss537430741ILLUMINA|HumanOmni5-4v1_B_rs7077164-131_B_F_1888146376fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg06/22/1208/29/15146Genomicunknown
ss562033509TISHKOFF|snp_chr10_71583198fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg11/22/1211/23/12138Genomicunknown
ss656927984SSMP|10_71583198fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg12/14/1202/12/15138Genomicunknown
ss778962567ILLUMINA|HumanOmni25Exome-8v1_A_rs7077164-131_B_F_1865769366fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/30/1307/10/15146Genomicunknown
ss780686286ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs7077164-131_B_F_1990484756fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/30/1307/10/15146Genomicunknown
ss783206441ILLUMINA|HumanOmni2.5-4v1_H_rs7077164-131_B_F_1857152916fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/30/1307/29/15146Genomicunknown
ss783359799ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs7077164-131_B_F_1990484756fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/31/1306/18/15146Genomicunknown
ss784161248ILLUMINA|HumanOmniExpressExome-8v1_A_rs7077164-131_B_F_1888146376fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/31/1306/18/15146Genomicunknown
ss825575210ILLUMINA|HumanCNV370v1_C_rs7077164-126_B_F_IFB1135107726:0fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg06/24/1311/21/14147Genomicunknown
ss832466492ILLUMINA|HumanOmniExpress-12v1_H_rs7077164-131_B_F_1857152916fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg09/17/1306/18/15146Genomicunknown
ss834424530ILLUMINA|HumanOmni2.5-8v1_A_rs7077164-131_B_F_1865769366fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg09/18/1307/29/15146Genomicunknown
ss987619632EVA-GONL|EVA-GONL_rs7077164fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg04/23/1404/25/14142Genomicunknown
ss1077085138JMKIDD_LAB|HGDP_WGS_chr10_71583198fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg07/10/1407/11/14142Genomicunknown
ss13379272091000GENOMES|PHASE3_V1_50601345fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg08/16/1408/16/14142Genomicunknown
ss1426360259DDI|DDI_rs7077164fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg11/04/1411/04/14144Genomicunknown
ss1575196525EVA_GENOME_DK|EVA_GENOME_DK_snv_rs7077164fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg02/19/1502/19/15144Genomicunknown
ss1597291097EVA_DECODE|EVA_DECODE_10_71253204_547082_rs7077164fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg03/02/1503/03/15144Genomicunknown
ss1624825135EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_10_71583198_27938484fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg03/04/1503/04/15144Genomicunknown
ss1667819168EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_10_71583198_27938484fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg03/04/1503/04/15144Genomicunknown
ss1713188870EVA_SVP|EVA_SVP_883237fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg03/12/1503/12/15144Genomicunknown
ss1751978211ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs7077164-131_B_F_1990484756fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/27/1506/09/15146Genomicunknown
ss1751978212ILLUMINA|OmniExpressExome-8v1-1_B_rs7077164-131_B_F_1888146376fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/27/1506/09/15146Genomicunknown
ss1806445937HAMMER_LAB|Hsieh_5464198fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg07/15/1507/16/15146Genomicunknown
ss1917847795ILLUMINA|HumanExome-12v1-1_B_exm-rs7077164-131_B_F_1990484756fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg10/16/1510/16/15147Genomicunknown
ss1930984647WEILL_CORNELL_DGM|SNV:chr10:71583198fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg10/16/1510/17/15147Genomicunknown
ss1946285051ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs7077164-131_B_F_1990484756fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg10/29/1510/29/15147Genomicunknown
ss1959271152ILLUMINA|exm-rs7077164-131_B_F_1990484756fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg11/13/1511/13/15147Genomicunknown
ss1967160043GENOMED|rs7077164fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg02/16/1602/16/16147Genomicunknown
ss2026218965JJLAB|SNP6721520fwd/BC/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg08/29/1608/30/16149Genomicunknown
ss2154492859USC_VALOUEV|NC_000010.10:g.71583198C>Tfwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg11/17/1611/17/16150Genomicunknown
ss2175752200HUMAN_LONGEVITY|HLI-10-69823442-C-Tfwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg11/18/1611/18/16150Genomicunknown
ss2338792007TOPMED|10_71583198_C/Tfwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg11/19/1611/19/16150Genomicunknown
ss2627579711SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4262565fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg01/06/1701/06/17151Genomicunknown
ss2632725926ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs7077164-131_B_F_18881463fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg02/02/1702/02/17151Genomicunknown
ss2698737695GRF|rs7077164fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg02/13/1702/13/17151Genomicunknown
ss2890156333GNOMAD|rs7077164fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/19/1705/19/17151Genomicunknown
ss2984914791AFFY|Axiom_PsorMich_Affx-3578713fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/24/1705/24/17151Genomicunknown
ss3006680125SWEGEN|NC_000010.10:g.71583198C>Tfwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg05/30/1705/30/17151Genomicunknown
ss3021249657ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs7077164-131_B_F_1990484756fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg06/28/1706/28/17151Genomicunknown
ss3026900884BIOINF_KMB_FNS_UNIBA|10.69823442C>Tfwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg07/05/1707/05/17151Genomicunknown
ss3122999470TOPMED|TOPMed_freeze_5?chr10:69,823,442fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg09/29/1709/29/17151Genomicunknown
ss3349182395CSHL|rs7077164fwd/C/Ttaagtaatggcagagagttttggtcgctactggcctctgccagctcagcg10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7077164|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 ACACACACAT GCTTACATGC AAGGAATGAA GGCACAAGCC AAAGGTCGCA AGGTGATACT
 GTGTAATACA GTGAACTGGT CTAATCTAGA ACAAAAATCT GCTTTCGCCA CTTACTAGCT
 CTGTATGGGT GGAGCCCTGA CCTGTCTATT CTAGTGCTTT CCTCTGTATC CTTGGGCCTG
 TTCCTCAACT GTGTCTATTC ACCTGTGTAA CAGCTGCGTA CTAAGGACCT GCTGGGCACC
 ATGCAGTGTG TCGGGTTCAA GTGCATTGTC CACCATGAAT GCAAGTGATA AGTTACAGCT
 TATGAGAAAT TTTCTAGGTG CCTGTTACTT TTCTAGGTGC CTGTTATTGT TAAGCCATGA
 GAGTGACAGA TGAGGAAGTT TCACTGTTTC CCTGAGGAAC TAGAATGCAC TGTACCTCTT
 TAGAGGTGGG GAAGGAAGGC CTAAAGAAGA GTTGCAGGAG ACAAGGTATC ACATTTAAGT
 AATGGCAGAG AGTTTTGGTC
 Y
 GCTACTGGCC TCTGCCAGCT CAGCGTGTGG CCTCCTCGAT ACCCACGGTG GCAGGTGGCA
 CTAGCAGGGT GCTCACTGGG CTCTCTGGCT GGCCCTCCTC TGGCCTCAGA AGCCGAGGGA
 CCCAAGTAAC ACTCACCCAG GTCCCCAAGC CAGGGAAGAG AGGCTGACAG ATGTTAAGCA
 TATGGGAAAC GAAGGACCGC ATTTGCTGGA GAGTGAATGG GCTGGGGTGG GAGTCACAGT
 TCCAGGATGC TGCCCTGGGA GACAAGGAGA CCGTGAAAAG ATTCAGCTGG ACCCGGTGAG
 AAGAGGGTCG TCCGGGTTAA TTAAAAGGGT GTCCAGAAGC CCTGGGAAGC TCCCTCCCTC
 CCTCTGGGCC CAGAAGATAG GGCCCGGGGG TCTGGGAAAG CTTTCAGGAG AGGAGTGCCA
 AGATTAATGA GATGGGGTGG AGGCAAGGGT TGGGTGATGG GGCCTGGGCA GAGAGACCGT
 TCGCATCAGG GCTCATGGGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008583 ABBA01019610
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss1337927209EAS 1008AF 0.594200020.40579998
EUR 1006AF 0.684899990.31510001
AFR 1322AF 0.505299990.49470001
AMR 694AF 0.579299990.42069998
SAS 978AF 0.736199980.26380000
ss144278381ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ss168534617CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss170362240YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss201675828BANTU 2IG 1.00000000 0.500000000.50000000
ss224793567pilot_1_YRI_low_coverage_panel 118AF 0.466101710.53389829
ss235226504pilot_1_CEU_low_coverage_panel 120AF 0.708333310.29166666
ss241922327pilot_1_CHB+JPT_low_coverage_panel 120AF 0.574999990.42500001
ss24562896AFD_EUR_PANELEuropean 48IG0.416666660.291666660.291666660.050043000.562500000.43750000
AFD_AFR_PANELAfrican American 46IG0.086956520.478260870.434782590.751830000.326086970.67391306
AFD_CHN_PANELAsian 48IG0.500000000.333333340.166666670.250592000.666666690.33333334
ss38541957HapMap-CEUEuropean 224IG0.446428570.491071430.062500000.150222000.691964270.30803570
HapMap-HCBAsian 86IG0.255813960.581395330.162790700.273322000.546511650.45348838
HapMap-JPTAsian 170IG0.235294120.552941200.211764710.342782000.511764710.48823529
HapMap-YRISub-Saharan African 226IG0.221238940.548672560.230088500.317310000.495575220.50442475
HAPMAP-ASW 98IG0.244897960.510204080.244897961.000000000.500000000.50000000
HAPMAP-CHBAsian 80IG0.300000010.550000010.150000010.438578000.574999990.42500001
HAPMAP-CHD 168IG0.345238090.500000000.154761910.751830000.595238090.40476191
HAPMAP-GIH 176IG0.477272720.477272720.045454550.150222000.715909060.28409091
HAPMAP-LWK 178IG0.224719110.516853930.258426960.751830000.483146070.51685393
HAPMAP-MKK 286IG0.426573430.489510480.083916080.200325000.671328660.32867134
HAPMAP-TSI 176IG0.420454530.431818190.147727270.583882000.636363630.36363637
ENSEMBL_Watson 2IG1.00000000 1.00000000
ss97660756J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.474+/-0.1120000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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