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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs6910071

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr6:32315077 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>G
Variation Type
SNV Single Nucleotide Variation
Frequency
G=0.182285 (50167/275212, ALFA)
G=0.145642 (38550/264690, TOPMED)
G=0.146311 (20511/140188, GnomAD) (+ 20 more)
G=0.12046 (9480/78698, PAGE_STUDY)
G=0.09831 (2778/28258, 14KJPN)
G=0.09785 (1640/16760, 8.3KJPN)
G=0.1076 (689/6404, 1000G_30x)
G=0.1048 (525/5008, 1000G)
G=0.2410 (929/3854, ALSPAC)
G=0.2457 (911/3708, TWINSUK)
G=0.1150 (337/2930, KOREAN)
G=0.1200 (250/2084, HGDP_Stanford)
G=0.0981 (168/1712, HapMap)
G=0.1343 (152/1132, Daghestan)
G=0.187 (187/998, GoNL)
G=0.295 (177/600, NorthernSweden)
G=0.032 (7/216, Qatari)
G=0.019 (4/214, Vietnamese)
A=0.436 (48/110, SGDP_PRJ)
G=0.20 (8/40, GENOME_DK)
A=0.50 (12/24, Ancient Sardinia)
G=0.50 (12/24, Ancient Sardinia)
A=0.44 (8/18, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
TSBP1 : Intron Variant
TSBP1-AS1 : Intron Variant
Publications
26 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 280464 A=0.817959 G=0.182041
European Sub 238250 A=0.805910 G=0.194090
African Sub 10052 A=0.94200 G=0.05800
African Others Sub 380 A=0.968 G=0.032
African American Sub 9672 A=0.9410 G=0.0590
Asian Sub 6678 A=0.9232 G=0.0768
East Asian Sub 4834 A=0.9162 G=0.0838
Other Asian Sub 1844 A=0.9414 G=0.0586
Latin American 1 Sub 678 A=0.882 G=0.118
Latin American 2 Sub 5906 A=0.7719 G=0.2281
South Asian Sub 5182 A=0.9346 G=0.0654
Other Sub 13718 A=0.85771 G=0.14229


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 275212 A=0.817715 G=0.182285
Allele Frequency Aggregator European Sub 234976 A=0.806159 G=0.193841
Allele Frequency Aggregator Other Sub 12896 A=0.85825 G=0.14175
Allele Frequency Aggregator African Sub 8896 A=0.9424 G=0.0576
Allele Frequency Aggregator Asian Sub 6678 A=0.9232 G=0.0768
Allele Frequency Aggregator Latin American 2 Sub 5906 A=0.7719 G=0.2281
Allele Frequency Aggregator South Asian Sub 5182 A=0.9346 G=0.0654
Allele Frequency Aggregator Latin American 1 Sub 678 A=0.882 G=0.118
TopMed Global Study-wide 264690 A=0.854358 G=0.145642
gnomAD - Genomes Global Study-wide 140188 A=0.853689 G=0.146311
gnomAD - Genomes European Sub 75904 A=0.80445 G=0.19555
gnomAD - Genomes African Sub 42020 A=0.94162 G=0.05838
gnomAD - Genomes American Sub 13660 A=0.81508 G=0.18492
gnomAD - Genomes Ashkenazi Jewish Sub 3324 A=0.9431 G=0.0569
gnomAD - Genomes East Asian Sub 3128 A=0.9293 G=0.0707
gnomAD - Genomes Other Sub 2152 A=0.8704 G=0.1296
The PAGE Study Global Study-wide 78698 A=0.87954 G=0.12046
The PAGE Study AfricanAmerican Sub 32516 A=0.93846 G=0.06154
The PAGE Study Mexican Sub 10806 A=0.75310 G=0.24690
The PAGE Study Asian Sub 8318 A=0.9155 G=0.0845
The PAGE Study PuertoRican Sub 7918 A=0.8609 G=0.1391
The PAGE Study NativeHawaiian Sub 4534 A=0.8540 G=0.1460
The PAGE Study Cuban Sub 4230 A=0.8839 G=0.1161
The PAGE Study Dominican Sub 3828 A=0.8979 G=0.1021
The PAGE Study CentralAmerican Sub 2450 A=0.7302 G=0.2698
The PAGE Study SouthAmerican Sub 1982 A=0.7659 G=0.2341
The PAGE Study NativeAmerican Sub 1260 A=0.7810 G=0.2190
The PAGE Study SouthAsian Sub 856 A=0.928 G=0.072
14KJPN JAPANESE Study-wide 28258 A=0.90169 G=0.09831
8.3KJPN JAPANESE Study-wide 16760 A=0.90215 G=0.09785
1000Genomes_30x Global Study-wide 6404 A=0.8924 G=0.1076
1000Genomes_30x African Sub 1786 A=0.9586 G=0.0414
1000Genomes_30x Europe Sub 1266 A=0.8073 G=0.1927
1000Genomes_30x South Asian Sub 1202 A=0.9268 G=0.0732
1000Genomes_30x East Asian Sub 1170 A=0.9513 G=0.0487
1000Genomes_30x American Sub 980 A=0.769 G=0.231
1000Genomes Global Study-wide 5008 A=0.8952 G=0.1048
1000Genomes African Sub 1322 A=0.9576 G=0.0424
1000Genomes East Asian Sub 1008 A=0.9484 G=0.0516
1000Genomes Europe Sub 1006 A=0.8131 G=0.1869
1000Genomes South Asian Sub 978 A=0.927 G=0.073
1000Genomes American Sub 694 A=0.772 G=0.228
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 A=0.7590 G=0.2410
UK 10K study - Twins TWIN COHORT Study-wide 3708 A=0.7543 G=0.2457
KOREAN population from KRGDB KOREAN Study-wide 2930 A=0.8850 G=0.1150
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 A=0.8800 G=0.1200
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 A=0.911 G=0.089
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 A=0.920 G=0.080
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 A=0.929 G=0.071
HGDP-CEPH-db Supplement 1 Europe Sub 320 A=0.853 G=0.147
HGDP-CEPH-db Supplement 1 Africa Sub 242 A=0.967 G=0.033
HGDP-CEPH-db Supplement 1 America Sub 216 A=0.560 G=0.440
HGDP-CEPH-db Supplement 1 Oceania Sub 72 A=1.00 G=0.00
HapMap Global Study-wide 1712 A=0.9019 G=0.0981
HapMap American Sub 770 A=0.855 G=0.145
HapMap African Sub 512 A=0.971 G=0.029
HapMap Asian Sub 254 A=0.921 G=0.079
HapMap Europe Sub 176 A=0.881 G=0.119
Genome-wide autozygosity in Daghestan Global Study-wide 1132 A=0.8657 G=0.1343
Genome-wide autozygosity in Daghestan Daghestan Sub 626 A=0.837 G=0.163
Genome-wide autozygosity in Daghestan Near_East Sub 142 A=0.937 G=0.063
Genome-wide autozygosity in Daghestan Central Asia Sub 122 A=0.918 G=0.082
Genome-wide autozygosity in Daghestan Europe Sub 108 A=0.852 G=0.148
Genome-wide autozygosity in Daghestan South Asian Sub 98 A=0.90 G=0.10
Genome-wide autozygosity in Daghestan Caucasus Sub 36 A=0.86 G=0.14
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 A=0.813 G=0.187
Northern Sweden ACPOP Study-wide 600 A=0.705 G=0.295
Qatari Global Study-wide 216 A=0.968 G=0.032
A Vietnamese Genetic Variation Database Global Study-wide 214 A=0.981 G=0.019
SGDP_PRJ Global Study-wide 110 A=0.436 G=0.564
The Danish reference pan genome Danish Study-wide 40 A=0.80 G=0.20
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 24 A=0.50 G=0.50
Siberian Global Study-wide 18 A=0.44 G=0.56
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 6 NC_000006.12:g.32315077A>G
GRCh37.p13 chr 6 NC_000006.11:g.32282854A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.3:g.3753550A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.2:g.3753656A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.2:g.3538455A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.1:g.3544051A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.2:g.3556539A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.1:g.3562124A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.2:g.3631341G>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.1:g.3630639G>A
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.2:g.3620074A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.1:g.3625694A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.2:g.3657170G>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.1:g.3662755G>A
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_APD_CTG1 NT_167244.2:g.3647661A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_APD_CTG1 NT_167244.1:g.3597577A>G
Gene: TSBP1, testis expressed basic protein 1 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
TSBP1 transcript variant 2 NM_001286474.2:c.574+695T…

NM_001286474.2:c.574+695T>C

N/A Intron Variant
TSBP1 transcript variant 3 NM_001286475.2:c.532+1317…

NM_001286475.2:c.532+1317T>C

N/A Intron Variant
TSBP1 transcript variant 1 NM_006781.5:c.580+7409T>C N/A Intron Variant
TSBP1 transcript variant X1 XM_017010182.2:c.242-407T…

XM_017010182.2:c.242-407T>C

N/A Intron Variant
TSBP1 transcript variant X2 XM_024446307.2:c.656-407T…

XM_024446307.2:c.656-407T>C

N/A Intron Variant
Gene: TSBP1-AS1, TSBP1 and BTNL2 antisense RNA 1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
TSBP1-AS1 transcript variant 1 NR_136244.1:n. N/A Intron Variant
TSBP1-AS1 transcript variant 2 NR_136245.1:n. N/A Intron Variant
TSBP1-AS1 transcript variant 3 NR_136246.1:n. N/A Intron Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= G
GRCh38.p14 chr 6 NC_000006.12:g.32315077= NC_000006.12:g.32315077A>G
GRCh37.p13 chr 6 NC_000006.11:g.32282854= NC_000006.11:g.32282854A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.3:g.3753550= NT_113891.3:g.3753550A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.2:g.3753656= NT_113891.2:g.3753656A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.2:g.3538455= NT_167248.2:g.3538455A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.1:g.3544051= NT_167248.1:g.3544051A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.2:g.3556539= NT_167245.2:g.3556539A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.1:g.3562124= NT_167245.1:g.3562124A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.2:g.3631341G>A NT_167249.2:g.3631341=
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.1:g.3630639G>A NT_167249.1:g.3630639=
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.2:g.3620074= NT_167246.2:g.3620074A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.1:g.3625694= NT_167246.1:g.3625694A>G
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.2:g.3657170G>A NT_167247.2:g.3657170=
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.1:g.3662755G>A NT_167247.1:g.3662755=
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_APD_CTG1 NT_167244.2:g.3647661= NT_167244.2:g.3647661A>G
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_APD_CTG1 NT_167244.1:g.3597577= NT_167244.1:g.3597577A>G
TSBP1 transcript variant 2 NM_001286474.2:c.574+695= NM_001286474.2:c.574+695T>C
TSBP1 transcript variant 3 NM_001286475.2:c.532+1317= NM_001286475.2:c.532+1317T>C
C6orf10 transcript NM_006781.3:c.580+7409= NM_006781.3:c.580+7409T>C
TSBP1 transcript variant 1 NM_006781.5:c.580+7409= NM_006781.5:c.580+7409T>C
C6orf10 transcript variant X1 XM_005248809.1:c.574+695= XM_005248809.1:c.574+695T>C
C6orf10 transcript variant X2 XM_005248810.1:c.553+695= XM_005248810.1:c.553+695T>C
C6orf10 transcript variant X1 XM_005272765.1:c.574+695= XM_005272765.1:c.574+695T>C
C6orf10 transcript variant X2 XM_005272766.1:c.553+695= XM_005272766.1:c.553+695T>C
C6orf10 transcript variant X1 XM_005274911.1:c.574+695= XM_005274911.1:c.574+695T>C
C6orf10 transcript variant X2 XM_005274912.1:c.553+695= XM_005274912.1:c.553+695T>C
C6orf10 transcript variant X1 XM_005275077.1:c.574+695= XM_005275077.1:c.574+695T>C
C6orf10 transcript variant X2 XM_005275078.1:c.553+695= XM_005275078.1:c.553+695T>C
C6orf10 transcript variant X1 XM_005275341.1:c.574+695= XM_005275341.1:c.574+695T>C
C6orf10 transcript variant X2 XM_005275342.1:c.553+695= XM_005275342.1:c.553+695T>C
C6orf10 transcript variant X1 XM_005275508.1:c.574+695C>T XM_005275508.1:c.574+695=
C6orf10 transcript variant X2 XM_005275509.1:c.553+695C>T XM_005275509.1:c.553+695=
TSBP1 transcript variant X1 XM_017010182.2:c.242-407= XM_017010182.2:c.242-407T>C
TSBP1 transcript variant X2 XM_024446307.2:c.656-407= XM_024446307.2:c.656-407T>C
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

142 SubSNP, 22 Frequency submissions
No Submitter Submission ID Date (Build)
1 BCM_SSAHASNP ss10289433 Jul 11, 2003 (116)
2 SI_MHC_SNP ss12692812 Oct 31, 2003 (119)
3 CSHL-HAPMAP ss17104377 Feb 27, 2004 (120)
4 CSHL-HAPMAP ss17875386 Feb 27, 2004 (120)
5 SSAHASNP ss22404767 Apr 05, 2004 (121)
6 KRIBB_YJKIM ss65846695 Dec 01, 2006 (127)
7 ILLUMINA ss66624214 Dec 01, 2006 (127)
8 ILLUMINA ss67515280 Dec 01, 2006 (127)
9 ILLUMINA ss67880347 Dec 01, 2006 (127)
10 PERLEGEN ss68971992 May 17, 2007 (127)
11 ILLUMINA ss70895053 May 25, 2008 (130)
12 ILLUMINA ss71489018 May 17, 2007 (127)
13 AFFY ss74839726 Aug 16, 2007 (128)
14 ILLUMINA ss75453749 Dec 07, 2007 (129)
15 ILLUMINA ss79238391 Dec 15, 2007 (130)
16 KRIBB_YJKIM ss84573732 Dec 15, 2007 (130)
17 ILLUMINA ss122645533 Dec 01, 2009 (131)
18 ILLUMINA ss154391329 Dec 01, 2009 (131)
19 ILLUMINA ss159566949 Dec 01, 2009 (131)
20 ILLUMINA ss160824158 Dec 01, 2009 (131)
21 ILLUMINA ss172216849 Jul 04, 2010 (132)
22 ILLUMINA ss174163996 Jul 04, 2010 (132)
23 BCM-HGSC-SUB ss207509636 Jul 04, 2010 (135)
24 1000GENOMES ss222306140 Jul 14, 2010 (136)
25 1000GENOMES ss233401013 Jul 14, 2010 (136)
26 1000GENOMES ss240471572 Jul 15, 2010 (136)
27 GMI ss278729364 May 04, 2012 (137)
28 GMI ss285374995 Apr 25, 2013 (138)
29 ILLUMINA ss410944830 Sep 17, 2011 (136)
30 ILLUMINA ss481396900 May 04, 2012 (137)
31 ILLUMINA ss481423381 May 04, 2012 (137)
32 ILLUMINA ss482402204 Sep 08, 2015 (146)
33 ILLUMINA ss485493438 May 04, 2012 (137)
34 EXOME_CHIP ss491382988 May 04, 2012 (137)
35 ILLUMINA ss537408981 Sep 08, 2015 (146)
36 SSMP ss653039273 Apr 25, 2013 (138)
37 ILLUMINA ss778585070 Sep 08, 2015 (146)
38 ILLUMINA ss780686147 Sep 08, 2015 (146)
39 ILLUMINA ss783192247 Sep 08, 2015 (146)
40 ILLUMINA ss783359654 Sep 08, 2015 (146)
41 ILLUMINA ss784147367 Sep 08, 2015 (146)
42 ILLUMINA ss825568909 Apr 01, 2015 (144)
43 ILLUMINA ss832452077 Sep 08, 2015 (146)
44 ILLUMINA ss833078072 Jul 13, 2019 (153)
45 ILLUMINA ss834042213 Sep 08, 2015 (146)
46 EVA-GONL ss982771913 Aug 21, 2014 (142)
47 JMKIDD_LAB ss1073509187 Aug 21, 2014 (142)
48 1000GENOMES ss1319575947 Aug 21, 2014 (142)
49 HAMMER_LAB ss1397450310 Sep 08, 2015 (146)
50 EVA_GENOME_DK ss1581609094 Apr 01, 2015 (144)
51 EVA_UK10K_ALSPAC ss1615287120 Apr 01, 2015 (144)
52 EVA_UK10K_TWINSUK ss1658281153 Apr 01, 2015 (144)
53 EVA_SVP ss1712851884 Apr 01, 2015 (144)
54 ILLUMINA ss1752630504 Sep 08, 2015 (146)
55 ILLUMINA ss1752630505 Sep 08, 2015 (146)
56 ILLUMINA ss1917803302 Feb 12, 2016 (147)
57 WEILL_CORNELL_DGM ss1926023882 Feb 12, 2016 (147)
58 ILLUMINA ss1946174377 Feb 12, 2016 (147)
59 ILLUMINA ss1946174378 Feb 12, 2016 (147)
60 ILLUMINA ss1958890841 Feb 12, 2016 (147)
61 ILLUMINA ss1958890843 Feb 12, 2016 (147)
62 GENOMED ss1970358680 Jul 19, 2016 (147)
63 JJLAB ss2023645621 Sep 14, 2016 (149)
64 ILLUMINA ss2094825588 Dec 20, 2016 (150)
65 ILLUMINA ss2095178850 Dec 20, 2016 (150)
66 USC_VALOUEV ss2151812692 Dec 20, 2016 (150)
67 ILLUMINA ss2634431850 Nov 08, 2017 (151)
68 ILLUMINA ss2635155810 Nov 08, 2017 (151)
69 GRF ss2707406619 Nov 08, 2017 (151)
70 ILLUMINA ss2711070301 Nov 08, 2017 (151)
71 AFFY ss2985363426 Nov 08, 2017 (151)
72 AFFY ss2985995411 Nov 08, 2017 (151)
73 SWEGEN ss2998805627 Nov 08, 2017 (151)
74 ILLUMINA ss3022601849 Nov 08, 2017 (151)
75 ILLUMINA ss3022601850 Nov 08, 2017 (151)
76 BIOINF_KMB_FNS_UNIBA ss3025609751 Nov 08, 2017 (151)
77 ILLUMINA ss3625898297 Oct 12, 2018 (152)
78 ILLUMINA ss3629507578 Oct 12, 2018 (152)
79 ILLUMINA ss3629507579 Oct 12, 2018 (152)
80 ILLUMINA ss3632350112 Oct 12, 2018 (152)
81 ILLUMINA ss3633416248 Oct 12, 2018 (152)
82 ILLUMINA ss3634138821 Oct 12, 2018 (152)
83 ILLUMINA ss3635058837 Oct 12, 2018 (152)
84 ILLUMINA ss3635058838 Oct 12, 2018 (152)
85 ILLUMINA ss3635819804 Oct 12, 2018 (152)
86 ILLUMINA ss3636779801 Oct 12, 2018 (152)
87 ILLUMINA ss3637572593 Oct 12, 2018 (152)
88 ILLUMINA ss3638621183 Oct 12, 2018 (152)
89 ILLUMINA ss3639311741 Oct 12, 2018 (152)
90 ILLUMINA ss3639681358 Oct 12, 2018 (152)
91 ILLUMINA ss3640766136 Oct 12, 2018 (152)
92 ILLUMINA ss3640766137 Oct 12, 2018 (152)
93 ILLUMINA ss3643562755 Oct 12, 2018 (152)
94 ILLUMINA ss3644907441 Oct 12, 2018 (152)
95 ILLUMINA ss3644907442 Oct 12, 2018 (152)
96 ILLUMINA ss3653114903 Oct 12, 2018 (152)
97 ILLUMINA ss3653114904 Oct 12, 2018 (152)
98 ILLUMINA ss3654129236 Oct 12, 2018 (152)
99 EVA_DECODE ss3716919287 Jul 13, 2019 (153)
100 ILLUMINA ss3726332004 Jul 13, 2019 (153)
101 ACPOP ss3733366942 Jul 13, 2019 (153)
102 ILLUMINA ss3744269360 Jul 13, 2019 (153)
103 ILLUMINA ss3744550871 Jul 13, 2019 (153)
104 ILLUMINA ss3745358816 Jul 13, 2019 (153)
105 ILLUMINA ss3745358817 Jul 13, 2019 (153)
106 EVA ss3764829347 Jul 13, 2019 (153)
107 PAGE_CC ss3771280776 Jul 13, 2019 (153)
108 ILLUMINA ss3772852487 Jul 13, 2019 (153)
109 ILLUMINA ss3772852488 Jul 13, 2019 (153)
110 KHV_HUMAN_GENOMES ss3807983918 Jul 13, 2019 (153)
111 EVA ss3829835755 Apr 26, 2020 (154)
112 EVA ss3838396153 Apr 26, 2020 (154)
113 EVA ss3843838339 Apr 26, 2020 (154)
114 HGDP ss3847829462 Apr 26, 2020 (154)
115 SGDP_PRJ ss3864265488 Apr 26, 2020 (154)
116 KRGDB ss3911042766 Apr 26, 2020 (154)
117 EVA ss3985213903 Apr 26, 2021 (155)
118 EVA ss4017267367 Apr 26, 2021 (155)
119 VINODS ss4025172010 Apr 26, 2021 (155)
120 VINODS ss4025189958 Apr 26, 2021 (155)
121 VINODS ss4025210428 Apr 26, 2021 (155)
122 TOPMED ss4698537654 Apr 26, 2021 (155)
123 TOMMO_GENOMICS ss5176860002 Apr 26, 2021 (155)
124 EVA ss5237395080 Apr 26, 2021 (155)
125 1000G_HIGH_COVERAGE ss5267953176 Oct 13, 2022 (156)
126 EVA ss5315143410 Oct 13, 2022 (156)
127 EVA ss5364751571 Oct 13, 2022 (156)
128 HUGCELL_USP ss5465684918 Oct 13, 2022 (156)
129 EVA ss5508431637 Oct 13, 2022 (156)
130 1000G_HIGH_COVERAGE ss5553616111 Oct 13, 2022 (156)
131 SANFORD_IMAGENETICS ss5624624577 Oct 13, 2022 (156)
132 SANFORD_IMAGENETICS ss5640099119 Oct 13, 2022 (156)
133 TOMMO_GENOMICS ss5714722945 Oct 13, 2022 (156)
134 EVA ss5799684247 Oct 13, 2022 (156)
135 YY_MCH ss5807313230 Oct 13, 2022 (156)
136 EVA ss5842035004 Oct 13, 2022 (156)
137 EVA ss5847291583 Oct 13, 2022 (156)
138 EVA ss5848090901 Oct 13, 2022 (156)
139 EVA ss5883260982 Oct 13, 2022 (156)
140 EVA ss5968601033 Oct 13, 2022 (156)
141 EVA ss5979781128 Oct 13, 2022 (156)
142 EVA ss5980357259 Oct 13, 2022 (156)
143 1000Genomes NC_000006.11 - 32282854 Oct 12, 2018 (152)
144 1000Genomes_30x NC_000006.12 - 32315077 Oct 13, 2022 (156)
145 The Avon Longitudinal Study of Parents and Children NC_000006.11 - 32282854 Oct 12, 2018 (152)
146 Genome-wide autozygosity in Daghestan NC_000006.10 - 32390832 Apr 26, 2020 (154)
147 The Danish reference pan genome NC_000006.11 - 32282854 Apr 26, 2020 (154)
148 gnomAD - Genomes NC_000006.12 - 32315077 Apr 26, 2021 (155)
149 Genome of the Netherlands Release 5 NC_000006.11 - 32282854 Apr 26, 2020 (154)
150 HGDP-CEPH-db Supplement 1 NC_000006.10 - 32390832 Apr 26, 2020 (154)
151 HapMap NC_000006.12 - 32315077 Apr 26, 2020 (154)
152 KOREAN population from KRGDB NC_000006.11 - 32282854 Apr 26, 2020 (154)
153 Northern Sweden NC_000006.11 - 32282854 Jul 13, 2019 (153)
154 The PAGE Study NC_000006.12 - 32315077 Jul 13, 2019 (153)
155 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000006.11 - 32282854 Apr 26, 2021 (155)
156 Qatari NC_000006.11 - 32282854 Apr 26, 2020 (154)
157 SGDP_PRJ NC_000006.11 - 32282854 Apr 26, 2020 (154)
158 Siberian NC_000006.11 - 32282854 Apr 26, 2020 (154)
159 8.3KJPN NC_000006.11 - 32282854 Apr 26, 2021 (155)
160 14KJPN NC_000006.12 - 32315077 Oct 13, 2022 (156)
161 TopMed NC_000006.12 - 32315077 Apr 26, 2021 (155)
162 UK 10K study - Twins NC_000006.11 - 32282854 Oct 12, 2018 (152)
163 A Vietnamese Genetic Variation Database NC_000006.11 - 32282854 Jul 13, 2019 (153)
164 ALFA NC_000006.12 - 32315077 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs9268216 Dec 04, 2003 (119)
rs52809155 Sep 21, 2007 (128)
rs58871666 May 25, 2008 (130)
rs112890528 Sep 17, 2011 (135)
rs115195476 Mar 28, 2012 (136)
rs117483219 Aug 16, 2010 (132)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss3639311741, ss3639681358 NC_000006.9:32390831:A:G NC_000006.12:32315076:A:G (self)
424958, 507354, ss207509636, ss278729364, ss285374995, ss481396900, ss825568909, ss1397450310, ss1712851884, ss2635155810, ss3643562755, ss3847829462 NC_000006.10:32390831:A:G NC_000006.12:32315076:A:G (self)
31344111, 17477803, 7774033, 7770298, 18220160, 6651807, 439830, 8065812, 16282468, 4329046, 34829309, 17477803, 3876373, ss222306140, ss233401013, ss240471572, ss481423381, ss482402204, ss485493438, ss491382988, ss537408981, ss653039273, ss778585070, ss780686147, ss783192247, ss783359654, ss784147367, ss832452077, ss833078072, ss834042213, ss982771913, ss1073509187, ss1319575947, ss1581609094, ss1615287120, ss1658281153, ss1752630504, ss1752630505, ss1917803302, ss1926023882, ss1946174377, ss1946174378, ss1958890841, ss1958890843, ss1970358680, ss2023645621, ss2094825588, ss2095178850, ss2151812692, ss2634431850, ss2707406619, ss2711070301, ss2985363426, ss2985995411, ss2998805627, ss3022601849, ss3022601850, ss3625898297, ss3629507578, ss3629507579, ss3632350112, ss3633416248, ss3634138821, ss3635058837, ss3635058838, ss3635819804, ss3636779801, ss3637572593, ss3638621183, ss3640766136, ss3640766137, ss3644907441, ss3644907442, ss3653114903, ss3653114904, ss3654129236, ss3733366942, ss3744269360, ss3744550871, ss3745358816, ss3745358817, ss3764829347, ss3772852487, ss3772852488, ss3829835755, ss3838396153, ss3864265488, ss3911042766, ss3985213903, ss4017267367, ss5176860002, ss5237395080, ss5315143410, ss5364751571, ss5508431637, ss5624624577, ss5640099119, ss5799684247, ss5842035004, ss5847291583, ss5848090901, ss5968601033, ss5979781128, ss5980357259 NC_000006.11:32282853:A:G NC_000006.12:32315076:A:G (self)
41142046, 221350146, 3101598, 502245, 48560049, 535915212, 11499059825, ss3025609751, ss3716919287, ss3726332004, ss3771280776, ss3807983918, ss3843838339, ss4698537654, ss5267953176, ss5465684918, ss5553616111, ss5714722945, ss5807313230, ss5883260982 NC_000006.12:32315076:A:G NC_000006.12:32315076:A:G (self)
ss10289433, ss17104377, ss17875386, ss22404767 NT_007592.13:23104672:G:G NC_000006.12:32315076:A:G (self)
ss12692812, ss65846695, ss66624214, ss67515280, ss67880347, ss68971992, ss70895053, ss71489018, ss74839726, ss75453749, ss79238391, ss84573732, ss122645533, ss154391329, ss159566949, ss160824158, ss172216849, ss174163996, ss410944830 NT_007592.15:32222853:A:G NC_000006.12:32315076:A:G (self)
ss4025189958 NT_113891.3:3753549:A:G NC_000006.12:32315076:A:G (self)
ss4025172010 NT_167244.2:3647660:A:G NC_000006.12:32315076:A:G (self)
ss4025210428 NT_167245.2:3556538:A:G NC_000006.12:32315076:A:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

26 citations for rs6910071
PMID Title Author Year Journal
15747258 A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms. Miretti MM et al. 2005 American journal of human genetics
20017995 A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies. Black MH et al. 2009 BMC proceedings
20018015 Elastic-net regularization approaches for genome-wide association studies of rheumatoid arthritis. Cho S et al. 2009 BMC proceedings
20018025 Genome-wide analysis of haplotype interaction for the data from the North American Rheumatoid Arthritis Consortium. Park J et al. 2009 BMC proceedings
20018053 A genome-wide association scan for rheumatoid arthritis data by Hotelling's T2 tests. Chen L et al. 2009 BMC proceedings
20018067 A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis. Chanda P et al. 2009 BMC proceedings
20018081 Assessment of gene-covariate interactions by incorporating covariates into association mapping. Chiu YF et al. 2009 BMC proceedings
20309765 Bagging optimal ROC curve method for predictive genetic tests, with an application for rheumatoid arthritis. Lu Q et al. 2010 Journal of biopharmaceutical statistics
20453842 Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. Stahl EA et al. 2010 Nature genetics
20933377 Recent findings on genetics of systemic autoimmune diseases. Delgado-Vega A et al. 2010 Current opinion in immunology
21383967 Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci. Zhernakova A et al. 2011 PLoS genetics
21592391 Causal graph-based analysis of genome-wide association data in rheumatoid arthritis. Alekseyenko AV et al. 2011 Biology direct
21595938 Rheumatoid arthritis-associated polymorphisms are not protective against Alzheimer's disease. Simmons CR et al. 2011 Molecular neurodegeneration
22355377 Caucasian and Asian specific rheumatoid arthritis risk loci reveal limited replication and apparent allelic heterogeneity in north Indians. Prasad P et al. 2012 PloS one
22661644 Genetic markers of rheumatoid arthritis susceptibility in anti-citrullinated peptide antibody negative patients. Viatte S et al. 2012 Annals of the rheumatic diseases
23121884 Investigation of Caucasian rheumatoid arthritis susceptibility loci in African patients with the same disease. Viatte S et al. 2012 Arthritis research & therapy
23223422 Identification of the NF-κB activating protein-like locus as a risk locus for rheumatoid arthritis. Xie G et al. 2013 Annals of the rheumatic diseases
24270849 Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Denny JC et al. 2013 Nature biotechnology
24449572 Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study. Orozco G et al. 2014 Arthritis & rheumatology (Hoboken, N.J.)
26253105 Knowledge-based analysis of genetic associations of rheumatoid arthritis to inform studies searching for pleiotropic genes: a literature review and network analysis. Zheng W et al. 2015 Arthritis research & therapy
26386125 Loci associated with N-glycosylation of human IgG are not associated with rheumatoid arthritis: a Mendelian randomisation study. Yarwood A et al. 2016 Annals of the rheumatic diseases
26895230 Replication of Associations of Genetic Loci Outside the HLA Region With Susceptibility to Anti-Cyclic Citrullinated Peptide-Negative Rheumatoid Arthritis. Viatte S et al. 2016 Arthritis & rheumatology (Hoboken, N.J.)
27109359 Identifying genetically driven clinical phenotypes using linear mixed models. Mosley JD et al. 2016 Nature communications
27508393 Phenome-Wide Association Study to Explore Relationships between Immune System Related Genetic Loci and Complex Traits and Diseases. Verma A et al. 2016 PloS one
27812365 Shared Genetic Etiology of Autoimmune Diseases in Patients from a Biorepository Linked to De-identified Electronic Health Records. Restrepo NA et al. 2016 Frontiers in genetics
32831971 Investigating the GWAS-Implicated Loci for Rheumatoid Arthritis in the Pakistani Population. Aslam MM et al. 2020 Disease markers
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07