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Reference SNP (refSNP) Cluster Report: rs4355801                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:111/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G/T (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.2756/1380 (1000 Genomes)
G=0.3308/41538 (TOPMED)
HGVS Names
  • CM000670.2:g.118911634A>G
  • CM000670.2:g.118911634A>T
  • NC_000008.10:g.119923873A>G
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss279978955 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4355801 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss5799256SC_JCM|NT_023811.11_7975990fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg01/10/0310/25/06111Genomicunknown
ss14340025WI_SSAHASNP|chr8.NT_008046.14_33142051fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg11/05/0311/22/03119Genomicunknown
ss19764918CSHL-HAPMAP|CSHL-HuDD-200402.chr8.NT_008046.14_33142051fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg02/20/0403/04/04120Genomicunknown
ss22665310SSAHASNP|WGSA-200403-chr8.chr8.NT_008046.14_33142051fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg03/21/0403/21/04121Genomicunknown
ss24378624PERLEGEN|afd4406781byFreqfwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg08/10/0409/13/04123Genomicunknown
ss44914978ABI|hCV11869235byFreqfwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg07/19/0511/03/06126Genomicunknown
ss66650606ILLUMINA|HumanHap300v1.1_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg11/09/0611/09/06127Genomicunknown
ss67329427ILLUMINA|HumanHap550v1.1_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg11/14/0611/14/06127Genomicunknown
ss67729915ILLUMINA|HumanHap650Yv1.0_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg11/14/0611/14/06127Genomicunknown
ss69060111PERLEGEN|PGP04406781byFreqfwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg01/30/0703/31/08127Genomicunknown
ss70801204ILLUMINA|HumanHap550v3.0__rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg04/20/0703/30/08130Genomicunknown
ss71380069ILLUMINA|HumanHap650Yv3.0_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg04/23/0704/23/07127Genomicunknown
ss75495827ILLUMINA|ILMN_Human_1M_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg08/28/0708/29/07129Genomicunknown
ss79180211ILLUMINA|HumanHap300v2.0_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg04/18/0711/18/07130Genomicunknown
ss84255975KRIBB_YJKIM|KHS669137fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg12/04/0712/06/07130Genomicunknown
ss93957208BCMHGSC_JDW|JWB-2516836fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg02/26/0803/05/08129Genomicunknown
ss98106938HUMANGENOME_JCVI|1103652423138fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg03/30/0803/31/08130Genomicunknown
ss104568777BGI|BGI_rs4355801fwd/TA/Gagcagtaracaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg06/08/0806/18/09131Genomicunknown
ss1083412431000GENOMES|CEU.trio.12.15.2008_2067648_chr8_119993054fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg12/15/0812/15/08130Genomicunknown
ss122299347ILLUMINA|HumanCNV370v1_C_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg04/14/0904/15/09131Genomicunknown
ss133437498ENSEMBL|ENSSNP2730545byFreqfwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg12/08/0803/07/10131Genomicunknown
ss143745139ENSEMBL|ENSSNP7245180fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg06/05/0906/06/09131Genomicunknown
ss154291316ILLUMINA|Human610_Quadv1_B_rs4355801-128_T_F_1501774000fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg06/18/0906/20/09131Genomicunknown
ss156815582GMI|GMI_SNP_113512991fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg06/24/0906/25/09131Genomicunknown
ss159468274ILLUMINA|Human660W-Quad_v1_A_rs4355801-128_T_F_1501774000fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg07/06/0907/07/09131Genomicunknown
ss162732022COMPLETE_GENOMICS|NA07022_36_chr8_119993054fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg09/28/0909/29/09132Genomicunknown
ss167056505COMPLETE_GENOMICS|NA20431_36_chr8_119993054fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg09/30/0909/30/09132Genomicunknown
ss171781181ILLUMINA|HumanCNV370-Quadv3_C_rs4355801-128_T_F_1501774000fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg10/01/0910/04/09132Genomicunknown
ss173720172ILLUMINA|Human1M-Duov3_B_rs4355801-128_T_F_1501774000fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg10/01/0910/04/09132Genomicunknown
ss181835978PAGE_STUDY|PAGE_EAGLE_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg12/14/0912/23/10132Genomicunknown
ss206520611BCM-HGSC-SUB|BCM_CMT_1011-1751939fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg03/15/1003/18/10132Genomicunknown
ss2346033061000GENOMES|pilot_1_CEU_4207935_chr8_119993054fwd/A/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg05/01/1005/01/10132Genomicunknown
ss2414222121000GENOMES|pilot_1_CHB+JPT_3307289_chr8_119993054fwd/A/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg05/01/1005/01/10132Genomicunknown
ss254612056BL|SNP126866_8_119993054fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg08/19/1008/19/10134Genomicunknown
ss279978955GMI|GMI_AK_SNP_4299226fwd/A/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg12/16/1012/16/10137Genomicunknown
ss294172173PJP|SNP_3678531_chr8_119993054fwd/A/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg01/21/1101/21/11134Genomicunknown
ss410933092ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs4355801fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg06/07/1106/07/11135Genomicunknown
ss491416495EXOME_CHIP|.GWAS._132721_chr_8_119923873fwd/TA/Gagcagtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtcagctg03/05/1203/05/12137Genomicunknown
ss537229948ILLUMINA|HumanOmni5-4v1_B_rs4355801-131_T_F_1885470895fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc06/22/1208/29/15146Genomicunknown
ss561028022TISHKOFF|snp_chr8_119923873fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc11/22/1211/23/12138Genomicunknown
ss780685010ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs4355801-131_T_F_1990492221fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/30/1307/10/15142Genomicunknown
ss783358485ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs4355801-131_T_F_1990492221fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/31/1306/19/15142Genomicunknown
ss825510729ILLUMINA|HumanCNV370v1_C_rs4355801-126_T_F_IFB1135541349:0fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc06/24/1311/21/14147Genomicunknown
ss832979757ILLUMINA|Human660W-Quad_v1_C_rs4355801-131_T_F_1858196707fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc09/18/1307/02/15142Genomicunknown
ss833570586ILLUMINA|Human660W-Quad_v1_H_rs4355801-131_T_F_1858196707fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc09/18/1307/02/15142Genomicunknown
ss985991961EVA-GONL|EVA-GONL_rs4355801fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc04/23/1404/25/14142Genomicunknown
ss1075867230JMKIDD_LAB|HGDP_WGS_chr8_119923873fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc07/10/1407/11/14142Genomicunknown
ss13316666001000GENOMES|PHASE3_V1_44089795fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc08/16/1408/16/14142Genomicunknown
ss13316666011000GENOMES|PHASE3_V1_44089796fwd/A/Ttaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc08/16/1408/16/14142Genomicunknown
ss1397537452HAMMER_LAB|HAMMER_LAB_rs4355801fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc09/30/1409/30/14146Genomicunknown
ss1582860659EVA_GENOME_DK|EVA_GENOME_DK_snv_rs4355801fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc02/19/1502/20/15144Genomicunknown
ss1595605962EVA_DECODE|EVA_DECODE_8_119993054_984687_rs4355801fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc03/02/1503/03/15144Genomicunknown
ss1621595724EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_8_119923873_24397148fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc03/04/1503/04/15144Genomicunknown
ss1664589757EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_8_119923873_24397148fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc03/04/1503/04/15144Genomicunknown
ss1713066196EVA_SVP|EVA_SVP_760563fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc03/12/1503/12/15144Genomicunknown
ss1752709144ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs4355801-131_T_F_2060140927fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/27/1506/09/15146Genomicunknown
ss1917831313ILLUMINA|HumanExome-12v1-1_B_exm-rs4355801-131_T_F_2060140927fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc10/16/1510/16/15147Genomicunknown
ss1929265850WEILL_CORNELL_DGM|SNV:chr8:119923873fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc10/16/1510/17/15147Genomicunknown
ss1946245295ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs4355801-131_T_F_2060140927fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc10/29/1510/29/15147Genomicunknown
ss1959138233ILLUMINA|exm-rs4355801-131_T_F_1990492221fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc11/13/1511/13/15147Genomicunknown
ss1971078986GENOMED|rs4355801fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc02/16/1602/16/16147Genomicunknown
ss2025336131JJLAB|SNP5838686fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc08/29/1608/30/16149Genomicunknown
ss2094834187ILLUMINA|Immuno_BeadChip_11419691_B_rs4355801-131_T_F_1858196707fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc09/27/1609/27/16150Genomicunknown
ss2095214508ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs4355801-131_T_F_1858196707fwd/TA/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc09/27/1609/27/16150Genomicunknown
ss2153563312USC_VALOUEV|NC_000008.10:g.119923873A>Gfwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc11/17/1611/17/16150Genomicunknown
ss2306871559HUMAN_LONGEVITY|HLI-8-118911634-A-G,Tfwd/A/G/Ttaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc11/18/1611/18/16150Genomicunknown
ss2476848410TOPMED|8_119923873_A/Gfwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc11/20/1611/20/16150Genomicunknown
ss2634795701ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs4355801-131_T_F_18854708fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc02/02/1702/02/17151Genomicunknown
ss2635186644ILLUMINA|Cancer_BeadChip_11459870_A_rs4355801-128_T_F_1616887710fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc02/02/1702/02/17151Genomicunknown
ss2709347845GRF|rs4355801fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc02/13/1702/13/17151Genomicunknown
ss2872014954GNOMAD|rs4355801fwd/A/G/Ttaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/19/1705/19/17151Genomicunknown
ss2985447072AFFY|Axiom_PsorMich_Affx-31435179fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/24/1705/24/17151Genomicunknown
ss2986091415AFFY|Axiom_Smokesc1_Affx-31435179fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/24/1705/24/17151Genomicunknown
ss3003900706SWEGEN|NC_000008.10:g.119923873A>Gfwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc05/30/1705/30/17151Genomicunknown
ss3022877766ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs4355801-131_T_F_1990492221fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc06/28/1706/28/17151Genomicunknown
ss3026452891BIOINF_KMB_FNS_UNIBA|8.118911634A>Gfwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc07/05/1707/05/17151Genomicunknown
ss3348376584CSHL|rs4355801fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc10/02/1710/02/17151Genomicunknown
ss3574217976TOPMED|TOPMed_freeze_5?chr8:118,911,634-01fwd/A/Gtaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc10/06/1710/06/17151Genomicunknown
ss3574217977TOPMED|TOPMed_freeze_5?chr8:118,911,634-02fwd/A/Ttaaacaggtgtacaggtctcaataatgggtggtaggtgtcagggaaagtc10/06/1710/06/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4355801|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G/T'|mol=Genomic|build=151
 TGTTGCTGTT TAATACCTAG TTTCAAATTC AGGGTTTGGG TTTAACTGAA ATTTATTCTG
 GAGGTTTCAG CAAGGTTTGC TTCTTTTACC ATCTCCTCTT AGTAAGCAAA TCCTGGAGAT
 TTTCCTTGCC ACAAGTGCTT AATGGCAGAG AACATCTTGT CACCATCCAA GGCATATCCT
 TTTGAGTGAT ATATTTTTCT GGCTAGAGAG AGAAATCTGA CCCAGACCCC ACAAATAGCA
 GATTTATATT ACATATAAAA CCATTACTCC AGGATTCCTG GGTAGGAGAT TTCTGCTTTT
 CAGAATTTTT ACTTTTTCTC TTTTGACTCT TGATGTCATC ACATTTCAGG GGTTATACTT
 GACTTCTGAA GCTTAAATCC AAAGGTATAA TCAAAATACA TAATTGGTAG TAGGTACAAA
 ACCTGAGATG GTTGGGACTA AGAGATTAGG CAAACACTGT GCCTAGTCTA AGCAGTAAAC
 AGGTGTACAG GTCTCAATAA
 D
 TGGGTGGTAG GTGTCAGGGA AAGTCAGCTG CTAAAGCTGT TAGGATTTAA TGAAGTGATA
 ATGATGTAAT AAATGAGCAG TGGAGGTCAG AGAGAGTCAG CTAATTGGGT CATTGAGATT
 TAATAAGATG ATGTCTATAA TTGTCTTAAG TGTAGGGCTG TGCTCCTTGC AAGTTCTCAA
 TAAATGACAT TTACTATGAG TACCAAAGAC AATGAGGGAG CAATAGCAAA TCAGTACAAG
 ATGAATCAGT AATCTCTTAT TTTTTGGCTT TATAAACATT GCTTTCTAGG AATCTAGCTG
 GGCCCAGAGT CTGGGGCTAA AAGGAAAGCA TTTAATAAAT AATGTGATGA TGATGATTAT
 TTTCATTACC GTACCAAAAG TATAGTAATG GTTATATACC AATGGTAACT TTGGCATTTA
 ATCAAAGTTA CATACCATAT ACTGTTGGTA TATTTAACTT TTCGTTAAAT ACCAAAAGTA
 TGGTAATGGA AATAATACGG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_023811.11 ABBA01037810
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss133437498ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 4IG0.50000000 0.50000000 0.500000000.50000000
ss143745139ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss162732022CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss167056505PGP 2IG 1.00000000 1.00000000
ss234603306pilot_1_CEU_low_coverage_panel 120AF 0.533333360.46666667
ss241422212pilot_1_CHB+JPT_low_coverage_panel 120AF 0.691666660.30833334
ss24378624AFD_EUR_PANELEuropean 48IG0.250000000.541666690.208333330.751830000.520833310.47916666
AFD_AFR_PANELAfrican American 42IG0.857142870.095238100.047619050.050043000.904761910.09523810
AFD_CHN_PANELAsian 48IG0.500000000.375000000.125000000.583882000.687500000.31250000
ss44914978HapMap-CEUEuropean 224IG0.285714300.553571400.160714280.200325000.562500000.43750000
HapMap-HCBAsian 86IG0.395348850.511627910.093023260.438578000.651162800.34883720
HapMap-JPTAsian 172IG0.511627910.406976730.081395351.000000000.715116260.28488371
HapMap-YRISub-Saharan African 226IG0.973451320.02654867 1.000000000.986725690.01327434
HAPMAP-ASW 98IG0.734693880.26530612 0.654721000.867346940.13265306
HAPMAP-CHBAsian 82IG0.439024390.56097561 0.099721000.719512220.28048781
HAPMAP-CHD 170IG0.576470610.376470600.047058820.751830000.764705900.23529412
HAPMAP-GIH 176IG0.500000000.397727280.102272730.654721000.698863630.30113637
HAPMAP-LWK 180IG0.888888900.11111111 1.000000000.944444420.05555556
HAPMAP-MEX 100IG0.259999990.500000000.239999991.000000000.509999990.49000001
HAPMAP-MKK 286IG0.832167800.160839160.006993011.000000000.912587400.08741259
HAPMAP-TSI 176IG0.443181810.397727280.159090910.250592000.642045440.35795453
ss69060111HapMap-CEUEuropean 120IG0.266666680.533333360.200000000.583882000.533333360.46666667
HapMap-HCBAsian 90IG0.400000010.488888890.111111110.654721000.644444470.35555556
HapMap-JPTAsian 90IG0.577777800.377777790.044444450.751830000.766666650.23333333
HapMap-YRISub-Saharan African 120IG0.983333350.01666667 1.000000000.991666670.00833333
ss98106938J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.401+/-0.2010000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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