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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1175544

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr3:12425545 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>T
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.246945 (65364/264690, TOPMED)
T=0.255335 (35725/139914, GnomAD)
T=0.29680 (28991/97680, ALFA) (+ 20 more)
T=0.40590 (11470/28258, 14KJPN)
T=0.39821 (6674/16760, 8.3KJPN)
T=0.2163 (1385/6404, 1000G_30x)
T=0.2278 (1141/5008, 1000G)
T=0.2853 (1278/4480, Estonian)
T=0.3433 (1323/3854, ALSPAC)
T=0.3271 (1213/3708, TWINSUK)
T=0.4055 (1188/2930, KOREAN)
T=0.2466 (465/1886, HapMap)
T=0.4099 (751/1832, Korea1K)
T=0.311 (310/998, GoNL)
T=0.400 (316/790, PRJEB37584)
T=0.241 (151/626, Chileans)
T=0.275 (165/600, NorthernSweden)
C=0.410 (100/244, SGDP_PRJ)
T=0.208 (45/216, Qatari)
T=0.425 (91/214, Vietnamese)
T=0.17 (16/94, PharmGKB)
T=0.40 (16/40, GENOME_DK)
C=0.38 (13/34, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
PPARG : Intron Variant
Publications
9 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 97680 C=0.70320 T=0.29680
European Sub 74934 C=0.67439 T=0.32561
African Sub 7178 C=0.8837 T=0.1163
African Others Sub 248 C=0.927 T=0.073
African American Sub 6930 C=0.8821 T=0.1179
Asian Sub 630 C=0.586 T=0.414
East Asian Sub 486 C=0.580 T=0.420
Other Asian Sub 144 C=0.604 T=0.396
Latin American 1 Sub 832 C=0.720 T=0.280
Latin American 2 Sub 7956 C=0.8128 T=0.1872
South Asian Sub 190 C=0.853 T=0.147
Other Sub 5960 C=0.7070 T=0.2930


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.753055 T=0.246945
gnomAD - Genomes Global Study-wide 139914 C=0.744665 T=0.255335
gnomAD - Genomes European Sub 75766 C=0.67394 T=0.32606
gnomAD - Genomes African Sub 41926 C=0.88499 T=0.11501
gnomAD - Genomes American Sub 13626 C=0.76626 T=0.23374
gnomAD - Genomes Ashkenazi Jewish Sub 3322 C=0.6517 T=0.3483
gnomAD - Genomes East Asian Sub 3126 C=0.5912 T=0.4088
gnomAD - Genomes Other Sub 2148 C=0.7304 T=0.2696
Allele Frequency Aggregator Total Global 97680 C=0.70320 T=0.29680
Allele Frequency Aggregator European Sub 74934 C=0.67439 T=0.32561
Allele Frequency Aggregator Latin American 2 Sub 7956 C=0.8128 T=0.1872
Allele Frequency Aggregator African Sub 7178 C=0.8837 T=0.1163
Allele Frequency Aggregator Other Sub 5960 C=0.7070 T=0.2930
Allele Frequency Aggregator Latin American 1 Sub 832 C=0.720 T=0.280
Allele Frequency Aggregator Asian Sub 630 C=0.586 T=0.414
Allele Frequency Aggregator South Asian Sub 190 C=0.853 T=0.147
14KJPN JAPANESE Study-wide 28258 C=0.59410 T=0.40590
8.3KJPN JAPANESE Study-wide 16760 C=0.60179 T=0.39821
1000Genomes_30x Global Study-wide 6404 C=0.7837 T=0.2163
1000Genomes_30x African Sub 1786 C=0.9401 T=0.0599
1000Genomes_30x Europe Sub 1266 C=0.6698 T=0.3302
1000Genomes_30x South Asian Sub 1202 C=0.8261 T=0.1739
1000Genomes_30x East Asian Sub 1170 C=0.6145 T=0.3855
1000Genomes_30x American Sub 980 C=0.796 T=0.204
1000Genomes Global Study-wide 5008 C=0.7722 T=0.2278
1000Genomes African Sub 1322 C=0.9365 T=0.0635
1000Genomes East Asian Sub 1008 C=0.6012 T=0.3988
1000Genomes Europe Sub 1006 C=0.6640 T=0.3360
1000Genomes South Asian Sub 978 C=0.825 T=0.175
1000Genomes American Sub 694 C=0.790 T=0.210
Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.7147 T=0.2853
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.6567 T=0.3433
UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.6729 T=0.3271
KOREAN population from KRGDB KOREAN Study-wide 2930 C=0.5945 T=0.4055
HapMap Global Study-wide 1886 C=0.7534 T=0.2466
HapMap American Sub 768 C=0.733 T=0.267
HapMap African Sub 688 C=0.858 T=0.142
HapMap Asian Sub 254 C=0.575 T=0.425
HapMap Europe Sub 176 C=0.693 T=0.307
Korean Genome Project KOREAN Study-wide 1832 C=0.5901 T=0.4099
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.689 T=0.311
CNV burdens in cranial meningiomas Global Study-wide 790 C=0.600 T=0.400
CNV burdens in cranial meningiomas CRM Sub 790 C=0.600 T=0.400
Chileans Chilean Study-wide 626 C=0.759 T=0.241
Northern Sweden ACPOP Study-wide 600 C=0.725 T=0.275
SGDP_PRJ Global Study-wide 244 C=0.410 T=0.590
Qatari Global Study-wide 216 C=0.792 T=0.208
A Vietnamese Genetic Variation Database Global Study-wide 214 C=0.575 T=0.425
PharmGKB Aggregated Global Study-wide 94 C=0.83 T=0.17
PharmGKB Aggregated PA130227503 Sub 94 C=0.83 T=0.17
The Danish reference pan genome Danish Study-wide 40 C=0.60 T=0.40
Siberian Global Study-wide 34 C=0.38 T=0.62
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 3 NC_000003.12:g.12425545C>T
GRCh37.p13 chr 3 NC_000003.11:g.12467044C>T
PPARG RefSeqGene NG_011749.1:g.142696C>T
Gene: PPARG, peroxisome proliferator activated receptor gamma (plus strand)
Molecule type Change Amino acid[Codon] SO Term
PPARG transcript variant 5 NM_001330615.4:c.730-8353…

NM_001330615.4:c.730-8353C>T

N/A Intron Variant
PPARG transcript variant 6 NM_001354666.3:c.1181-835…

NM_001354666.3:c.1181-8353C>T

N/A Intron Variant
PPARG transcript variant 7 NM_001354667.3:c.1181-835…

NM_001354667.3:c.1181-8353C>T

N/A Intron Variant
PPARG transcript variant 9 NM_001354669.2:c.554-8353…

NM_001354669.2:c.554-8353C>T

N/A Intron Variant
PPARG transcript variant 11 NM_001374261.3:c.730-8353…

NM_001374261.3:c.730-8353C>T

N/A Intron Variant
PPARG transcript variant 12 NM_001374262.3:c.730-8353…

NM_001374262.3:c.730-8353C>T

N/A Intron Variant
PPARG transcript variant 13 NM_001374263.2:c.1181-835…

NM_001374263.2:c.1181-8353C>T

N/A Intron Variant
PPARG transcript variant 14 NM_001374264.2:c.1181-835…

NM_001374264.2:c.1181-8353C>T

N/A Intron Variant
PPARG transcript variant 15 NM_001374265.1:c.820-8353…

NM_001374265.1:c.820-8353C>T

N/A Intron Variant
PPARG transcript variant 16 NM_001374266.1:c.654-8353…

NM_001374266.1:c.654-8353C>T

N/A Intron Variant
PPARG transcript variant 4 NM_005037.7:c.1181-8353C>T N/A Intron Variant
PPARG transcript variant 2 NM_015869.5:c.1271-8353C>T N/A Intron Variant
PPARG transcript variant 3 NM_138711.6:c.1181-8353C>T N/A Intron Variant
PPARG transcript variant 1 NM_138712.5:c.1181-8353C>T N/A Intron Variant
PPARG transcript variant 8 NM_001354668.2:c. N/A Genic Downstream Transcript Variant
PPARG transcript variant 10 NM_001354670.2:c. N/A Genic Downstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= T
GRCh38.p14 chr 3 NC_000003.12:g.12425545= NC_000003.12:g.12425545C>T
GRCh37.p13 chr 3 NC_000003.11:g.12467044= NC_000003.11:g.12467044C>T
PPARG RefSeqGene NG_011749.1:g.142696= NG_011749.1:g.142696C>T
PPARG transcript variant 5 NM_001330615.4:c.730-8353= NM_001330615.4:c.730-8353C>T
PPARG transcript variant 6 NM_001354666.3:c.1181-8353= NM_001354666.3:c.1181-8353C>T
PPARG transcript variant 7 NM_001354667.3:c.1181-8353= NM_001354667.3:c.1181-8353C>T
PPARG transcript variant 9 NM_001354669.2:c.554-8353= NM_001354669.2:c.554-8353C>T
PPARG transcript variant 11 NM_001374261.3:c.730-8353= NM_001374261.3:c.730-8353C>T
PPARG transcript variant 12 NM_001374262.3:c.730-8353= NM_001374262.3:c.730-8353C>T
PPARG transcript variant 13 NM_001374263.2:c.1181-8353= NM_001374263.2:c.1181-8353C>T
PPARG transcript variant 14 NM_001374264.2:c.1181-8353= NM_001374264.2:c.1181-8353C>T
PPARG transcript variant 15 NM_001374265.1:c.820-8353= NM_001374265.1:c.820-8353C>T
PPARG transcript variant 16 NM_001374266.1:c.654-8353= NM_001374266.1:c.654-8353C>T
PPARG transcript variant 4 NM_005037.5:c.1187-8353= NM_005037.5:c.1187-8353C>T
PPARG transcript variant 4 NM_005037.7:c.1181-8353= NM_005037.7:c.1181-8353C>T
PPARG transcript variant 2 NM_015869.4:c.1271-8353= NM_015869.4:c.1271-8353C>T
PPARG transcript variant 2 NM_015869.5:c.1271-8353= NM_015869.5:c.1271-8353C>T
PPARG transcript variant 3 NM_138711.3:c.1187-8353= NM_138711.3:c.1187-8353C>T
PPARG transcript variant 3 NM_138711.6:c.1181-8353= NM_138711.6:c.1181-8353C>T
PPARG transcript variant 1 NM_138712.3:c.1187-8353= NM_138712.3:c.1187-8353C>T
PPARG transcript variant 1 NM_138712.5:c.1181-8353= NM_138712.5:c.1181-8353C>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

96 SubSNP, 23 Frequency submissions
No Submitter Submission ID Date (Build)
1 KWOK ss1618022 Oct 18, 2000 (87)
2 SC_JCM ss2489101 Nov 09, 2000 (92)
3 YUSUKE ss4959422 Aug 28, 2002 (108)
4 PGA-UW-FHCRC ss5587622 Oct 08, 2002 (108)
5 PARC ss23144041 Sep 20, 2004 (126)
6 PERLEGEN ss23889418 Sep 20, 2004 (123)
7 SEQUENOM ss24781142 Sep 20, 2004 (126)
8 PGA-UW-FHCRC ss28447531 Sep 20, 2004 (123)
9 PGA-UW-FHCRC ss52088442 Oct 15, 2006 (127)
10 PHARMGKB_PARC ss69365010 May 17, 2007 (127)
11 ILLUMINA ss75239461 Dec 07, 2007 (129)
12 AFFY ss76443356 Dec 07, 2007 (129)
13 BCMHGSC_JDW ss92000727 Mar 24, 2008 (129)
14 BGI ss103902179 Dec 01, 2009 (131)
15 1000GENOMES ss111268983 Jan 25, 2009 (130)
16 KRIBB_YJKIM ss119384613 Dec 01, 2009 (131)
17 ENSEMBL ss138727319 Dec 01, 2009 (131)
18 ILLUMINA ss160001001 Dec 01, 2009 (131)
19 COMPLETE_GENOMICS ss161924477 Jul 04, 2010 (132)
20 ILLUMINA ss171534282 Jul 04, 2010 (132)
21 BCM-HGSC-SUB ss206137858 Jul 04, 2010 (132)
22 1000GENOMES ss219984912 Jul 14, 2010 (132)
23 WTCCC ss230387851 Jul 04, 2010 (132)
24 1000GENOMES ss231711181 Jul 14, 2010 (132)
25 1000GENOMES ss239144703 Jul 15, 2010 (132)
26 ILLUMINA ss244273936 Jul 04, 2010 (132)
27 BL ss252938555 May 09, 2011 (134)
28 GMI ss277017336 May 04, 2012 (137)
29 ILLUMINA ss410841308 Sep 17, 2011 (135)
30 ILLUMINA ss479585247 May 04, 2012 (137)
31 ILLUMINA ss479589785 May 04, 2012 (137)
32 ILLUMINA ss480069791 Sep 08, 2015 (146)
33 ILLUMINA ss484591371 May 04, 2012 (137)
34 ILLUMINA ss536720302 Sep 08, 2015 (146)
35 TISHKOFF ss556431267 Apr 25, 2013 (138)
36 SSMP ss650097689 Apr 25, 2013 (138)
37 ILLUMINA ss780669212 Sep 08, 2015 (146)
38 ILLUMINA ss782742479 Sep 08, 2015 (146)
39 ILLUMINA ss783709407 Sep 08, 2015 (146)
40 ILLUMINA ss831994444 Sep 08, 2015 (146)
41 ILLUMINA ss836165123 Sep 08, 2015 (146)
42 EVA-GONL ss978280510 Aug 21, 2014 (142)
43 JMKIDD_LAB ss1070181375 Aug 21, 2014 (142)
44 1000GENOMES ss1302835390 Aug 21, 2014 (142)
45 DDI ss1429333309 Apr 01, 2015 (144)
46 EVA_GENOME_DK ss1579848640 Apr 01, 2015 (144)
47 EVA_DECODE ss1587741948 Apr 01, 2015 (144)
48 EVA_UK10K_ALSPAC ss1606432093 Apr 01, 2015 (144)
49 EVA_UK10K_TWINSUK ss1649426126 Apr 01, 2015 (144)
50 EVA_SVP ss1712554513 Apr 01, 2015 (144)
51 HAMMER_LAB ss1798871264 Sep 08, 2015 (146)
52 WEILL_CORNELL_DGM ss1921533029 Feb 12, 2016 (147)
53 GENOMED ss1969325451 Jul 19, 2016 (147)
54 JJLAB ss2021319707 Sep 14, 2016 (149)
55 USC_VALOUEV ss2149387438 Dec 20, 2016 (150)
56 HUMAN_LONGEVITY ss2249141280 Dec 20, 2016 (150)
57 SYSTEMSBIOZJU ss2625160140 Nov 08, 2017 (151)
58 GRF ss2704748139 Nov 08, 2017 (151)
59 GNOMAD ss2789623738 Nov 08, 2017 (151)
60 SWEGEN ss2991842628 Nov 08, 2017 (151)
61 BIOINF_KMB_FNS_UNIBA ss3024422799 Nov 08, 2017 (151)
62 CSHL ss3344889253 Nov 08, 2017 (151)
63 ILLUMINA ss3628592271 Oct 11, 2018 (152)
64 ILLUMINA ss3631861274 Oct 11, 2018 (152)
65 ILLUMINA ss3633282470 Oct 11, 2018 (152)
66 ILLUMINA ss3633998960 Oct 11, 2018 (152)
67 ILLUMINA ss3636577027 Oct 11, 2018 (152)
68 ILLUMINA ss3638397782 Oct 11, 2018 (152)
69 ILLUMINA ss3643356059 Oct 11, 2018 (152)
70 EGCUT_WGS ss3659742811 Jul 13, 2019 (153)
71 EVA_DECODE ss3708652845 Jul 13, 2019 (153)
72 ACPOP ss3729639126 Jul 13, 2019 (153)
73 EVA ss3759671477 Jul 13, 2019 (153)
74 KHV_HUMAN_GENOMES ss3802820693 Jul 13, 2019 (153)
75 EVA ss3827665905 Apr 25, 2020 (154)
76 EVA ss3837254832 Apr 25, 2020 (154)
77 EVA ss3842678772 Apr 25, 2020 (154)
78 SGDP_PRJ ss3855243900 Apr 25, 2020 (154)
79 KRGDB ss3901018191 Apr 25, 2020 (154)
80 KOGIC ss3950679090 Apr 25, 2020 (154)
81 EVA ss3984503153 Apr 27, 2021 (155)
82 EVA ss4017065483 Apr 27, 2021 (155)
83 TOPMED ss4554482639 Apr 27, 2021 (155)
84 TOMMO_GENOMICS ss5157835524 Apr 27, 2021 (155)
85 1000G_HIGH_COVERAGE ss5253076703 Oct 13, 2022 (156)
86 EVA ss5337944517 Oct 13, 2022 (156)
87 HUGCELL_USP ss5452574749 Oct 13, 2022 (156)
88 1000G_HIGH_COVERAGE ss5530922695 Oct 13, 2022 (156)
89 SANFORD_IMAGENETICS ss5631558176 Oct 13, 2022 (156)
90 TOMMO_GENOMICS ss5689114177 Oct 13, 2022 (156)
91 EVA ss5799570055 Oct 13, 2022 (156)
92 YY_MCH ss5803488399 Oct 13, 2022 (156)
93 EVA ss5825356992 Oct 13, 2022 (156)
94 EVA ss5853493987 Oct 13, 2022 (156)
95 EVA ss5867662544 Oct 13, 2022 (156)
96 EVA ss5959818306 Oct 13, 2022 (156)
97 1000Genomes NC_000003.11 - 12467044 Oct 11, 2018 (152)
98 1000Genomes_30x NC_000003.12 - 12425545 Oct 13, 2022 (156)
99 The Avon Longitudinal Study of Parents and Children NC_000003.11 - 12467044 Oct 11, 2018 (152)
100 Chileans NC_000003.11 - 12467044 Apr 25, 2020 (154)
101 Genetic variation in the Estonian population NC_000003.11 - 12467044 Oct 11, 2018 (152)
102 The Danish reference pan genome NC_000003.11 - 12467044 Apr 25, 2020 (154)
103 gnomAD - Genomes NC_000003.12 - 12425545 Apr 27, 2021 (155)
104 Genome of the Netherlands Release 5 NC_000003.11 - 12467044 Apr 25, 2020 (154)
105 HapMap NC_000003.12 - 12425545 Apr 25, 2020 (154)
106 KOREAN population from KRGDB NC_000003.11 - 12467044 Apr 25, 2020 (154)
107 Korean Genome Project NC_000003.12 - 12425545 Apr 25, 2020 (154)
108 Northern Sweden NC_000003.11 - 12467044 Jul 13, 2019 (153)
109 CNV burdens in cranial meningiomas NC_000003.11 - 12467044 Apr 27, 2021 (155)
110 PharmGKB Aggregated NC_000003.12 - 12425545 Apr 25, 2020 (154)
111 Qatari NC_000003.11 - 12467044 Apr 25, 2020 (154)
112 SGDP_PRJ NC_000003.11 - 12467044 Apr 25, 2020 (154)
113 Siberian NC_000003.11 - 12467044 Apr 25, 2020 (154)
114 8.3KJPN NC_000003.11 - 12467044 Apr 27, 2021 (155)
115 14KJPN NC_000003.12 - 12425545 Oct 13, 2022 (156)
116 TopMed NC_000003.12 - 12425545 Apr 27, 2021 (155)
117 UK 10K study - Twins NC_000003.11 - 12467044 Oct 11, 2018 (152)
118 A Vietnamese Genetic Variation Database NC_000003.11 - 12467044 Jul 13, 2019 (153)
119 ALFA NC_000003.12 - 12425545 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs1663809 Jan 18, 2001 (92)
rs3773359 Oct 09, 2002 (108)
rs17247879 Mar 10, 2006 (126)
rs17344803 Mar 10, 2006 (126)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss76443356, ss92000727, ss111268983, ss161924477, ss206137858, ss252938555, ss277017336, ss479585247, ss1587741948, ss1712554513, ss3643356059 NC_000003.10:12442043:C:T NC_000003.12:12425544:C:T (self)
13981422, 7750871, 277395, 5481059, 6013579, 3403042, 8195585, 2923991, 52496, 3574959, 7260880, 1903792, 15804831, 7750871, 1687645, ss219984912, ss231711181, ss239144703, ss479589785, ss480069791, ss484591371, ss536720302, ss556431267, ss650097689, ss780669212, ss782742479, ss783709407, ss831994444, ss836165123, ss978280510, ss1070181375, ss1302835390, ss1429333309, ss1579848640, ss1606432093, ss1649426126, ss1798871264, ss1921533029, ss1969325451, ss2021319707, ss2149387438, ss2625160140, ss2704748139, ss2789623738, ss2991842628, ss3344889253, ss3628592271, ss3631861274, ss3633282470, ss3633998960, ss3636577027, ss3638397782, ss3659742811, ss3729639126, ss3759671477, ss3827665905, ss3837254832, ss3855243900, ss3901018191, ss3984503153, ss4017065483, ss5157835524, ss5337944517, ss5631558176, ss5799570055, ss5825356992, ss5959818306 NC_000003.11:12467043:C:T NC_000003.12:12425544:C:T (self)
18448630, 99266439, 2304511, 7057091, 8038, 22951281, 391860194, 9410741698, ss2249141280, ss3024422799, ss3708652845, ss3802820693, ss3842678772, ss3950679090, ss4554482639, ss5253076703, ss5452574749, ss5530922695, ss5689114177, ss5803488399, ss5853493987, ss5867662544 NC_000003.12:12425544:C:T NC_000003.12:12425544:C:T (self)
ss230387851 NT_022517.17:12407043:C:T NC_000003.12:12425544:C:T (self)
ss1618022, ss2489101, ss4959422, ss5587622, ss23144041, ss23889418, ss24781142, ss28447531, ss52088442, ss69365010, ss75239461, ss103902179, ss119384613, ss138727319, ss160001001, ss171534282, ss244273936, ss410841308 NT_022517.18:12407043:C:T NC_000003.12:12425544:C:T (self)
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Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

9 citations for rs1175544
PMID Title Author Year Journal
17347532 The Genetics of PPARG and the Skeleton. Ackert-Bicknell C et al. 2006 PPAR research
18707223 PPARG by dietary fat interaction influences bone mass in mice and humans. Ackert-Bicknell CL et al. 2008 Journal of bone and mineral research
19543210 PPARG genotype accounts for part of individual variation in body weight reduction in response to calorie restriction. Matsuo T et al. 2009 Obesity (Silver Spring, Md.)
23386649 Common genetic variants in peroxisome proliferator-activated receptor-γ (PPARG) and type 2 diabetes risk among Women's Health Initiative postmenopausal women. Chan KH et al. 2013 The Journal of clinical endocrinology and metabolism
24843374 Association of the PPAR-γ Gene with Altered Glucose Levels and Psychosis Profile in Schizophrenia Patients Exposed to Antipsychotics. Liu YR et al. 2014 Psychiatry investigation
26575832 Vitamin D, leptin and impact on immune response to seasonal influenza A/H1N1 vaccine in older persons. Sadarangani SP et al. 2016 Human vaccines & immunotherapeutics
27245511 Effect of dietary energy and polymorphisms in BRAP and GHRL on obesity and metabolic traits. Imaizumi T et al. 2018 Obesity research & clinical practice
27483259 Is the Mouse a Good Model of Human PPARγ-Related Metabolic Diseases? Pap A et al. 2016 International journal of molecular sciences
27560839 Polymorphisms FTO rs9939609, PPARG rs1801282 and ADIPOQ rs4632532 and rs182052 but not lifestyle are associated with obesity related-traits in Mexican children. Muñoz-Yáñez C et al. 2016 Genetics and molecular biology
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The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07