Name: rs11554257
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11554257

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr9:114842790 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: T>A / T>C
Variation Type: SNV Single Nucleotide Variation
Frequency: C=0.133290 (35724/268018, ALFA)
C=0.139102 (36819/264690, TOPMED)
C=0.133033 (18572/139604, GnomAD) (+ 21 more)
C=0.14698 (11564/78680, PAGE_STUDY)
C=0.13745 (3884/28258, 14KJPN)
C=0.13866 (2324/16760, 8.3KJPN)
C=0.1746 (1118/6404, 1000G_30x)
C=0.1759 (881/5008, 1000G)
C=0.0944 (423/4480, Estonian)
C=0.1232 (475/3854, ALSPAC)
C=0.1286 (477/3708, TWINSUK)
C=0.1638 (480/2930, KOREAN)
C=0.1436 (299/2082, HGDP_Stanford)
C=0.1839 (348/1892, HapMap)
C=0.119 (119/998, GoNL)
C=0.195 (154/788, PRJEB37584)
C=0.133 (80/600, NorthernSweden)
C=0.176 (38/216, Qatari)
C=0.241 (51/212, Vietnamese)
T=0.462 (72/156, SGDP_PRJ)
C=0.25 (16/64, Ancient Sardinia)
C=0.17 (7/40, GENOME_DK)
T=0.5 (4/8, Siberian)
C=0.5 (4/8, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: None
Publications: 3 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	273052	T=0.866729	A=0.000000, C=0.133271
European	Sub	245450	T=0.869362	A=0.000000, C=0.130638
African	Sub	8506	T=0.8748	A=0.0000, C=0.1252
African Others	Sub	330	T=0.852	A=0.000, C=0.148
African American	Sub	8176	T=0.8757	A=0.0000, C=0.1243
Asian	Sub	3476	T=0.8058	A=0.0000, C=0.1942
East Asian	Sub	2826	T=0.8110	A=0.0000, C=0.1890
Other Asian	Sub	650	T=0.783	A=0.000, C=0.217
Latin American 1	Sub	884	T=0.852	A=0.000, C=0.148
Latin American 2	Sub	1644	T=0.8364	A=0.0000, C=0.1636
South Asian	Sub	5180	T=0.8110	A=0.0000, C=0.1890
Other	Sub	7912	T=0.8476	A=0.0000, C=0.1524

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	268018	T=0.866710	A=0.000000, C=0.133290
Allele Frequency Aggregator	European	Sub	242356	T=0.869287	A=0.000000, C=0.130713
Allele Frequency Aggregator	African	Sub	7366	T=0.8771	A=0.0000, C=0.1229
Allele Frequency Aggregator	Other	Sub	7112	T=0.8473	A=0.0000, C=0.1527
Allele Frequency Aggregator	South Asian	Sub	5180	T=0.8110	A=0.0000, C=0.1890
Allele Frequency Aggregator	Asian	Sub	3476	T=0.8058	A=0.0000, C=0.1942
Allele Frequency Aggregator	Latin American 2	Sub	1644	T=0.8364	A=0.0000, C=0.1636
Allele Frequency Aggregator	Latin American 1	Sub	884	T=0.852	A=0.000, C=0.148
TopMed	Global	Study-wide	264690	T=0.860898	C=0.139102
gnomAD - Genomes	Global	Study-wide	139604	T=0.866967	C=0.133033
gnomAD - Genomes	European	Sub	75692	T=0.87339	C=0.12661
gnomAD - Genomes	African	Sub	41780	T=0.87228	C=0.12772
gnomAD - Genomes	American	Sub	13568	T=0.82282	C=0.17718
gnomAD - Genomes	Ashkenazi Jewish	Sub	3316	T=0.9095	C=0.0905
gnomAD - Genomes	East Asian	Sub	3106	T=0.7939	C=0.2061
gnomAD - Genomes	Other	Sub	2142	T=0.8557	C=0.1443
The PAGE Study	Global	Study-wide	78680	T=0.85302	C=0.14698
The PAGE Study	AfricanAmerican	Sub	32510	T=0.87041	C=0.12959
The PAGE Study	Mexican	Sub	10804	T=0.85015	C=0.14985
The PAGE Study	Asian	Sub	8314	T=0.8421	C=0.1579
The PAGE Study	PuertoRican	Sub	7916	T=0.8661	C=0.1339
The PAGE Study	NativeHawaiian	Sub	4530	T=0.8135	C=0.1865
The PAGE Study	Cuban	Sub	4230	T=0.8619	C=0.1381
The PAGE Study	Dominican	Sub	3828	T=0.8495	C=0.1505
The PAGE Study	CentralAmerican	Sub	2450	T=0.7996	C=0.2004
The PAGE Study	SouthAmerican	Sub	1982	T=0.7750	C=0.2250
The PAGE Study	NativeAmerican	Sub	1260	T=0.8349	C=0.1651
The PAGE Study	SouthAsian	Sub	856	T=0.756	C=0.244
14KJPN	JAPANESE	Study-wide	28258	T=0.86255	C=0.13745
8.3KJPN	JAPANESE	Study-wide	16760	T=0.86134	C=0.13866
1000Genomes_30x	Global	Study-wide	6404	T=0.8254	C=0.1746
1000Genomes_30x	African	Sub	1786	T=0.8807	C=0.1193
1000Genomes_30x	Europe	Sub	1266	T=0.8657	C=0.1343
1000Genomes_30x	South Asian	Sub	1202	T=0.7496	C=0.2504
1000Genomes_30x	East Asian	Sub	1170	T=0.7684	C=0.2316
1000Genomes_30x	American	Sub	980	T=0.834	C=0.166
1000Genomes	Global	Study-wide	5008	T=0.8241	C=0.1759
1000Genomes	African	Sub	1322	T=0.8759	C=0.1241
1000Genomes	East Asian	Sub	1008	T=0.7778	C=0.2222
1000Genomes	Europe	Sub	1006	T=0.8698	C=0.1302
1000Genomes	South Asian	Sub	978	T=0.745	C=0.255
1000Genomes	American	Sub	694	T=0.837	C=0.163
Genetic variation in the Estonian population	Estonian	Study-wide	4480	T=0.9056	C=0.0944
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.8768	C=0.1232
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.8714	C=0.1286
KOREAN population from KRGDB	KOREAN	Study-wide	2930	T=0.8362	C=0.1638
HGDP-CEPH-db Supplement 1	Global	Study-wide	2082	T=0.8564	C=0.1436
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	468	T=0.835	C=0.165
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	T=0.845	C=0.155
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	T=0.877	C=0.123
HGDP-CEPH-db Supplement 1	Europe	Sub	320	T=0.912	C=0.087
HGDP-CEPH-db Supplement 1	Africa	Sub	242	T=0.864	C=0.136
HGDP-CEPH-db Supplement 1	America	Sub	216	T=0.801	C=0.199
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	T=0.85	C=0.15
HapMap	Global	Study-wide	1892	T=0.8161	C=0.1839
HapMap	American	Sub	770	T=0.814	C=0.186
HapMap	African	Sub	692	T=0.796	C=0.204
HapMap	Asian	Sub	254	T=0.846	C=0.154
HapMap	Europe	Sub	176	T=0.858	C=0.142
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	T=0.881	C=0.119
CNV burdens in cranial meningiomas	Global	Study-wide	788	T=0.805	C=0.195
CNV burdens in cranial meningiomas	CRM	Sub	788	T=0.805	C=0.195
Northern Sweden	ACPOP	Study-wide	600	T=0.867	C=0.133
Qatari	Global	Study-wide	216	T=0.824	C=0.176
A Vietnamese Genetic Variation Database	Global	Study-wide	212	T=0.759	C=0.241
SGDP_PRJ	Global	Study-wide	156	T=0.462	C=0.538
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	64	T=0.75	C=0.25
The Danish reference pan genome	Danish	Study-wide	40	T=0.82	C=0.17
Siberian	Global	Study-wide	8	T=0.5	C=0.5

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 9	NC_000009.12:g.114842790T>A
GRCh38.p14 chr 9	NC_000009.12:g.114842790T>C
GRCh37.p13 chr 9	NC_000009.11:g.117605070T>A
GRCh37.p13 chr 9	NC_000009.11:g.117605070T>C

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	T=	A	C
GRCh38.p14 chr 9	NC_000009.12:g.114842790=	NC_000009.12:g.114842790T>A	NC_000009.12:g.114842790T>C
GRCh37.p13 chr 9	NC_000009.11:g.117605070=	NC_000009.11:g.117605070T>A	NC_000009.11:g.117605070T>C

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

115 SubSNP, 23 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SC_SNP	ss16257638	Feb 28, 2004 (120)
2	SC_SNP	ss18600011	Feb 28, 2004 (126)
3	ILLUMINA	ss66701420	Dec 01, 2006 (127)
4	ILLUMINA	ss66992669	Dec 01, 2006 (127)
5	ILLUMINA	ss67167928	Dec 01, 2006 (127)
6	ILLUMINA	ss70407027	May 17, 2007 (127)
7	ILLUMINA	ss70560952	May 23, 2008 (130)
8	ILLUMINA	ss71099037	May 17, 2007 (127)
9	ILLUMINA	ss75651918	Dec 06, 2007 (129)
10	KRIBB_YJKIM	ss85098553	Dec 14, 2007 (130)
11	ILLUMINA	ss121548544	Dec 01, 2009 (131)
12	ILLUMINA	ss152991549	Dec 01, 2009 (131)
13	ILLUMINA	ss159175819	Dec 01, 2009 (131)
14	ILLUMINA	ss159980292	Dec 01, 2009 (131)
15	ILLUMINA	ss169868738	Jul 04, 2010 (132)
16	ILLUMINA	ss171282055	Jul 04, 2010 (132)
17	BUSHMAN	ss200807236	Jul 04, 2010 (132)
18	1000GENOMES	ss224421692	Jul 14, 2010 (132)
19	1000GENOMES	ss234948841	Jul 15, 2010 (132)
20	1000GENOMES	ss241699868	Jul 15, 2010 (132)
21	GMI	ss280377876	May 04, 2012 (137)
22	ILLUMINA	ss410893473	Sep 17, 2011 (135)
23	ILLUMINA	ss479529862	May 04, 2012 (137)
24	ILLUMINA	ss479986981	Sep 08, 2015 (146)
25	ILLUMINA	ss536697405	Sep 08, 2015 (146)
26	TISHKOFF	ss561595618	Apr 25, 2013 (138)
27	SSMP	ss656092734	Apr 25, 2013 (138)
28	ILLUMINA	ss825376301	Apr 01, 2015 (144)
29	ILLUMINA	ss831979411	Sep 08, 2015 (146)
30	ILLUMINA	ss832688342	Jul 13, 2019 (153)
31	EVA-GONL	ss986917940	Aug 21, 2014 (142)
32	JMKIDD_LAB	ss1076563388	Aug 21, 2014 (142)
33	1000GENOMES	ss1335213306	Aug 21, 2014 (142)
34	DDI	ss1431943860	Apr 01, 2015 (144)
35	EVA_GENOME_DK	ss1583236143	Apr 01, 2015 (144)
36	EVA_DECODE	ss1596557232	Apr 01, 2015 (144)
37	EVA_UK10K_ALSPAC	ss1623433046	Apr 01, 2015 (144)
38	EVA_UK10K_TWINSUK	ss1666427079	Apr 01, 2015 (144)
39	EVA_SVP	ss1713135928	Apr 01, 2015 (144)
40	ILLUMINA	ss1752756178	Sep 08, 2015 (146)
41	HAMMER_LAB	ss1806135458	Sep 08, 2015 (146)
42	WEILL_CORNELL_DGM	ss1930232141	Feb 12, 2016 (147)
43	ILLUMINA	ss1946267187	Feb 12, 2016 (147)
44	ILLUMINA	ss1959210553	Feb 12, 2016 (147)
45	GENOMED	ss1971294776	Jul 19, 2016 (147)
46	JJLAB	ss2025838298	Sep 14, 2016 (149)
47	ILLUMINA	ss2094996806	Dec 20, 2016 (150)
48	ILLUMINA	ss2095224254	Dec 20, 2016 (150)
49	ILLUMINA	ss2095224255	Dec 20, 2016 (150)
50	USC_VALOUEV	ss2154067201	Dec 20, 2016 (150)
51	HUMAN_LONGEVITY	ss2313918658	Dec 20, 2016 (150)
52	SYSTEMSBIOZJU	ss2627386202	Nov 08, 2017 (151)
53	ILLUMINA	ss2634909664	Nov 08, 2017 (151)
54	GRF	ss2709946986	Nov 08, 2017 (151)
55	ILLUMINA	ss2711171715	Nov 08, 2017 (151)
56	GNOMAD	ss2882516888	Nov 08, 2017 (151)
57	AFFY	ss2986118255	Nov 08, 2017 (151)
58	SWEGEN	ss3005493494	Nov 08, 2017 (151)
59	ILLUMINA	ss3022959134	Nov 08, 2017 (151)
60	BIOINF_KMB_FNS_UNIBA	ss3026701685	Nov 08, 2017 (151)
61	CSHL	ss3348832222	Nov 08, 2017 (151)
62	ILLUMINA	ss3625990186	Oct 12, 2018 (152)
63	ILLUMINA	ss3630341899	Oct 12, 2018 (152)
64	ILLUMINA	ss3633546092	Oct 12, 2018 (152)
65	ILLUMINA	ss3634274917	Oct 12, 2018 (152)
66	ILLUMINA	ss3635229823	Oct 12, 2018 (152)
67	ILLUMINA	ss3635952624	Oct 12, 2018 (152)
68	ILLUMINA	ss3636978141	Oct 12, 2018 (152)
69	ILLUMINA	ss3637705989	Oct 12, 2018 (152)
70	ILLUMINA	ss3638832382	Oct 12, 2018 (152)
71	ILLUMINA	ss3639421857	Oct 12, 2018 (152)
72	ILLUMINA	ss3639744683	Oct 12, 2018 (152)
73	ILLUMINA	ss3640937112	Oct 12, 2018 (152)
74	ILLUMINA	ss3641246816	Oct 12, 2018 (152)
75	ILLUMINA	ss3641544839	Oct 12, 2018 (152)
76	ILLUMINA	ss3643757846	Oct 12, 2018 (152)
77	ILLUMINA	ss3645000525	Oct 12, 2018 (152)
78	ILLUMINA	ss3653513487	Oct 12, 2018 (152)
79	ILLUMINA	ss3653513488	Oct 12, 2018 (152)
80	EGCUT_WGS	ss3673032836	Jul 13, 2019 (153)
81	EVA_DECODE	ss3724632061	Jul 13, 2019 (153)
82	ILLUMINA	ss3726638388	Jul 13, 2019 (153)
83	ACPOP	ss3736825228	Jul 13, 2019 (153)
84	ILLUMINA	ss3744324644	Jul 13, 2019 (153)
85	ILLUMINA	ss3745529732	Jul 13, 2019 (153)
86	EVA	ss3769615257	Jul 13, 2019 (153)
87	PAGE_CC	ss3771521318	Jul 13, 2019 (153)
88	ILLUMINA	ss3773021607	Jul 13, 2019 (153)
89	KHV_HUMAN_GENOMES	ss3812782083	Jul 13, 2019 (153)
90	EVA	ss3831830516	Apr 26, 2020 (154)
91	HGDP	ss3847960588	Apr 26, 2020 (154)
92	SGDP_PRJ	ss3872945435	Apr 26, 2020 (154)
93	KRGDB	ss3920805873	Apr 26, 2020 (154)
94	EVA	ss3984625051	Apr 26, 2021 (155)
95	EVA	ss3985441102	Apr 26, 2021 (155)
96	EVA	ss4017455628	Apr 26, 2021 (155)
97	TOPMED	ss4833475933	Apr 26, 2021 (155)
98	TOMMO_GENOMICS	ss5195018253	Apr 26, 2021 (155)
99	EVA	ss5237465898	Apr 26, 2021 (155)
100	1000G_HIGH_COVERAGE	ss5281968940	Oct 16, 2022 (156)
101	EVA	ss5315428768	Oct 16, 2022 (156)
102	HUGCELL_USP	ss5477856856	Oct 16, 2022 (156)
103	EVA	ss5509828783	Oct 16, 2022 (156)
104	1000G_HIGH_COVERAGE	ss5574918361	Oct 16, 2022 (156)
105	SANFORD_IMAGENETICS	ss5624728706	Oct 16, 2022 (156)
106	SANFORD_IMAGENETICS	ss5648147874	Oct 16, 2022 (156)
107	TOMMO_GENOMICS	ss5739464963	Oct 16, 2022 (156)
108	EVA	ss5799794862	Oct 16, 2022 (156)
109	YY_MCH	ss5810953527	Oct 16, 2022 (156)
110	EVA	ss5829666456	Oct 16, 2022 (156)
111	EVA	ss5847362216	Oct 16, 2022 (156)
112	EVA	ss5856911679	Oct 16, 2022 (156)
113	EVA	ss5917780225	Oct 16, 2022 (156)
114	EVA	ss5977350686	Oct 16, 2022 (156)
115	EVA	ss5979904200	Oct 16, 2022 (156)
116	1000Genomes	NC_000009.11 - 117605070	Oct 12, 2018 (152)
117	1000Genomes_30x	NC_000009.12 - 114842790	Oct 16, 2022 (156)
118	The Avon Longitudinal Study of Parents and Children	NC_000009.11 - 117605070	Oct 12, 2018 (152)
119	Genetic variation in the Estonian population	NC_000009.11 - 117605070	Oct 12, 2018 (152)
120	The Danish reference pan genome	NC_000009.11 - 117605070	Apr 26, 2020 (154)
121	gnomAD - Genomes	NC_000009.12 - 114842790	Apr 26, 2021 (155)
122	Genome of the Netherlands Release 5	NC_000009.11 - 117605070	Apr 26, 2020 (154)
123	HGDP-CEPH-db Supplement 1	NC_000009.10 - 116644891	Apr 26, 2020 (154)
124	HapMap	NC_000009.12 - 114842790	Apr 26, 2020 (154)
125	KOREAN population from KRGDB	NC_000009.11 - 117605070	Apr 26, 2020 (154)
126	Northern Sweden	NC_000009.11 - 117605070	Jul 13, 2019 (153)
127	The PAGE Study	NC_000009.12 - 114842790	Jul 13, 2019 (153)
128	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000009.11 - 117605070	Apr 26, 2021 (155)
129	CNV burdens in cranial meningiomas	NC_000009.11 - 117605070	Apr 26, 2021 (155)
130	Qatari	NC_000009.11 - 117605070	Apr 26, 2020 (154)
131	SGDP_PRJ	NC_000009.11 - 117605070	Apr 26, 2020 (154)
132	Siberian	NC_000009.11 - 117605070	Apr 26, 2020 (154)
133	8.3KJPN	NC_000009.11 - 117605070	Apr 26, 2021 (155)
134	14KJPN	NC_000009.12 - 114842790	Oct 16, 2022 (156)
135	TopMed	NC_000009.12 - 114842790	Apr 26, 2021 (155)
136	UK 10K study - Twins	NC_000009.11 - 117605070	Oct 12, 2018 (152)
137	A Vietnamese Genetic Variation Database	NC_000009.11 - 117605070	Jul 13, 2019 (153)
138	ALFA	NC_000009.12 - 114842790	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs12238191	Mar 11, 2006 (126)
rs56905749	May 23, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
2579190555	NC_000009.12:114842789:T:A	NC_000009.12:114842789:T:A	(self)
ss3639421857, ss3639744683	NC_000009.9:114684623:T:C	NC_000009.12:114842789:T:C	(self)
638480, ss200807236, ss280377876, ss825376301, ss1596557232, ss1713135928, ss2094996806, ss3643757846, ss3847960588	NC_000009.10:116644890:T:C	NC_000009.12:114842789:T:C	(self)
47522966, 26405712, 18771084, 9401080, 11785040, 27983267, 10110093, 667029, 174502, 12274071, 24962415, 6583555, 52987560, 26405712, 5866484, ss224421692, ss234948841, ss241699868, ss479529862, ss479986981, ss536697405, ss561595618, ss656092734, ss831979411, ss832688342, ss986917940, ss1076563388, ss1335213306, ss1431943860, ss1583236143, ss1623433046, ss1666427079, ss1752756178, ss1806135458, ss1930232141, ss1946267187, ss1959210553, ss1971294776, ss2025838298, ss2095224254, ss2095224255, ss2154067201, ss2627386202, ss2634909664, ss2709946986, ss2711171715, ss2882516888, ss2986118255, ss3005493494, ss3022959134, ss3348832222, ss3625990186, ss3630341899, ss3633546092, ss3634274917, ss3635229823, ss3635952624, ss3636978141, ss3637705989, ss3638832382, ss3640937112, ss3641246816, ss3641544839, ss3645000525, ss3653513487, ss3653513488, ss3673032836, ss3736825228, ss3744324644, ss3745529732, ss3769615257, ss3773021607, ss3831830516, ss3872945435, ss3920805873, ss3984625051, ss3985441102, ss4017455628, ss5195018253, ss5237465898, ss5315428768, ss5509828783, ss5624728706, ss5648147874, ss5799794862, ss5829666456, ss5847362216, ss5977350686, ss5979904200	NC_000009.11:117605069:T:C	NC_000009.12:114842789:T:C	(self)
62444296, 335866565, 3904775, 742787, 73302067, 670853494, 2579190555, ss2313918658, ss3026701685, ss3724632061, ss3726638388, ss3771521318, ss3812782083, ss4833475933, ss5281968940, ss5477856856, ss5574918361, ss5739464963, ss5810953527, ss5856911679, ss5917780225	NC_000009.12:114842789:T:C	NC_000009.12:114842789:T:C	(self)
ss16257638, ss18600011	NT_008470.16:19262804:T:C	NC_000009.12:114842789:T:C	(self)
ss66701420, ss66992669, ss67167928, ss70407027, ss70560952, ss71099037, ss75651918, ss85098553, ss121548544, ss152991549, ss159175819, ss159980292, ss169868738, ss171282055, ss410893473	NT_008470.19:46769601:T:C	NC_000009.12:114842789:T:C	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

3 citations for rs11554257

PMID	Title	Author	Year	Journal
20848476	Genetic predictors of medically refractory ulcerative colitis.	Haritunians T et al.	2010	Inflammatory bowel diseases
28624054	Diverticulitis and Crohn's disease have distinct but overlapping tumor necrosis superfamily 15 haplotypes.	Connelly TM et al.	2017	The Journal of surgical research
29285231	Associations between TNFSF4, TNFSF8 and TNFSF15 and Behçet's disease but not VKH syndrome in Han Chinese.	Jiang Y et al.	2017	Oncotarget

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11554257