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Report for CCDS50291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50291.1 Public Mus musculus 18 Aldh7a1 21 106 86 CCDS HistoryNCBI Gene:110695Re-query CCDS DB by CCDS ID:50291.1Re-query CCDS DB by GeneID:110695See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000174518 ENSMUSP00000133372 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174518Link to Ensembl Protein Viewer:ENSMUSP00000133372Re-query CCDS DB by Nucleotide ID:ENSMUST00000174518Re-query CCDS DB by Protein ID:ENSMUSP00000133372
Original member Current member EBI,WTSI OTTMUST00000089708 OTTMUSP00000049050 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000089708Link to Vega Protein Viewer:OTTMUSP00000049050Re-query CCDS DB by Nucleotide ID:OTTMUST00000089708Re-query CCDS DB by Protein ID:OTTMUSP00000049050
Original member Current member NCBI NM_001127338.1 NP_001120810.1 Accepted alive Link to Nucleotide Sequence:NM_001127338.1Link to Protein Sequence:NP_001120810.1Re-query CCDS DB by Nucleotide ID:NM_001127338Re-query CCDS DB by Protein ID:NP_001120810Link to BLAST:NP_001120810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120810.1 511 Q9DBF1-2 511 100% 0 0

Chromosomal Locations for CCDS 50291.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56526953 56527007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56528277 56528352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56531490 56531563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56531711 56531808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56531981 56532097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56532488 56532594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56534190 56534274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56537204 56537298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56538701 56538742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56542225 56542322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56544965 56545042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56546904 56546948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56548447 56548579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56550296 56550419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56551160 56551240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56559222 56559287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56560776 56560829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18
18 56562033 56562140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18Link to Vega Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGTCTACTCTGCTGATCCATCATCCCCAGTATGCCTGGCTGCAAGACCTGGGGCTCCGCGAGGATAACG
AG
GGCGTGTATAATGGAAGCTGGGGCGGCCGGGGAGAGGTAATTACGACCTATTGTCCTGCTAACAATGA
G
CCAATAGCAAGAGTCCGACAGGCCAGCCTGAAGGACTATGAAGAAACCATCGGGAAAGCCAAGAAAGCC
TGG
AACATCTGGGCAGATATTCCTGCCCCAAAACGCGGAGAAATAGTCAGAAAGATTGGCGATGCCTTCC
GG
GAGAAGATCCAACTACTGGGAAGACTGGTGTCTTTGGAGATGGGGAAAATCCTGGTGGAAGGAATAGG
C
GAGGTTCAGGAGTACGTGGACGTCTGCGATTATGCTGCTGGCTTGTCGAGGATGATCGGGGGACCCACC
TTG
CCTTCTGAAAGACCCGGCCATGCTCTCATCGAAATGTGGAATCCCTTAGGCTTGGTGGGAATCATCA
CT
GCCTTCAATTTCCCCGTGGCTGTGTTTGGCTGGAACAATGCCATAGCTCTGATCACAGGGAATGTCTG
C
CTTTGGAAAGGAGCACCGACTACGTCCCTCGTTAGTGTGGCTGTCACAAAGATCATAGCCCAGGTTTTG
GAG
GACAACCTGCTGCCCGGTGCCATTTGTTCCCTGGTTTGTGGTGGAGCAGATATCGGCACAACGATGG
CC
AGAGATGAGCGTGTGAACCTGCTGTCCTTCACTGGGAGCACTCAGGTGGGGAAGGAGGTGGCCCTCAT
G
GTGCAGGAGAGGTTTGGGAAAAGCTTGTTGGAGCTTGGAGGAAACAATGCCATTATTGCTTTCGAGGAC
GCG
GACCTCAGCTTGGTTGTTCCGTCAGTTCTGTTTGCCGCCGTGGGAACAGCTGGGCAAAGGTGTACCA
CT
GTGAGGAGACTGTTTTTGCACGAAAGCATCCATAATGAAGTTGTGGACAGACTGAGAAGTGCCTACTC
A
CAGATCCGTGTTGGGAACCCCTGGGACCCCAATATCCTCTATGGACCGCTCCATACCAAACAGGCAGTG
AGC
ATGTTTGTGAGAGCCGTGGAAGAAGCCAAGAAACAAGGGGGCACAGTGGTCTATGGGGGCAAGGTCA
TG
GACCACCCTGGCAATTACGTGGAACCCACCATTGTGACCGGTCTTGCCCATGATGCGCCCATTGTTCA
C
CAGGAGACTTTTGCCCCAATCCTCTATGTCTTCAAATTCCAGGATGAAGAAGAGGTCTTTGAATGGAAC
AAT
GAAGTAAAACAGGGACTTTCAAGTAGTATCTTTACCAAAGATTTGGGCAGAATCTTCCGCTGGCTTG
G
A
CCTAAAGGTTCCGACTGTGGCATCGTGAACGTCAATATTCCTACCAGCGGGGCTGAGATTGGTGGTGC
G
TTTGGCGGAGAGAAGCACACTGGCGGTGGCCGGGAGTCTGGCAGCGACGCCTGGAAGCAGTACATGAGG
AGA
TCCACATGTACCATCAACTACAGCACGTCCCTCCCTCTGGCTCAGGGAATCAAGTTTCAGTGA


Translation (511 aa):
MSTLLIHHPQYAWLQDLGLREDNEGVYNGSWGGRGEVITTYCPANNEPIARVRQASLKDYEETIGKAKKA
W
NIWAD
IPAPKRGEIVRKIGDAFREKIQLLGRLVSLEMGKILVEGIGEVQEYVDVCDYAAGLSRMIGGPT
L
PSE
RPGHALIEMWNPLGLVGIITAFNFPVAVFGWNNAIALITGNVCLWKGAPTTSLVSVAVTKIIAQVL
E
DNLLPGAICSLVCGGADI
GTTMARDERVNLLSFTGSTQVGKEVALMVQERFGKSLLELGGNNAIIAFED
A
DLSLVVPSVLFAAVGTAGQRCTTVRRL
FLHESIHNEVVDRLRSAYSQIRVGNPWDPNILYGPLHTKQAV
S
MFVRAVEEAKKQGGTVVYGGK
VMDHPGNYVEPTIVTGLAHDAPIVHQETFAPILYVFKFQDEEEVFEWN
N
EVKQGLSSSIFTKDLGRIFRWL
GPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMR
R
ST
CTINYSTSLPLAQGIKFQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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