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Report for CCDS25280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25280.1 Public Mus musculus 11 Phb 21 106 86 CCDS HistoryNCBI Gene:18673Re-query CCDS DB by CCDS ID:25280.1Re-query CCDS DB by GeneID:18673See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000125172 ENSMUSP00000119603 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125172Link to Ensembl Protein Viewer:ENSMUSP00000119603Re-query CCDS DB by Nucleotide ID:ENSMUST00000125172Re-query CCDS DB by Protein ID:ENSMUSP00000119603
Original member Current member EBI,WTSI OTTMUST00000003483 OTTMUSP00000001681 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000003483Link to Vega Protein Viewer:OTTMUSP00000001681Re-query CCDS DB by Nucleotide ID:OTTMUST00000003483Re-query CCDS DB by Protein ID:OTTMUSP00000001681
Original member Current member NCBI NM_008831.4 NP_032857.1 Accepted alive Link to Nucleotide Sequence:NM_008831.4Link to Protein Sequence:NP_032857.1Re-query CCDS DB by Nucleotide ID:NM_008831Re-query CCDS DB by Protein ID:NP_032857Link to BLink:NP_032857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032857.1 272 P67778 272 100% 0 0

Chromosomal Locations for CCDS 25280.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 11Link to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95668064 95668151 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 95671387 95671548 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 95675142 95675284 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 95675570 95675686 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 95678051 95678146 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 95679694 95679906 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGCTGCCAAAGTGTTTGAGTCCATTGGAAAGTTCGGCCTGGCGTTGGCAGTTGCAGGAGGCGTGGTGA
AC
TCTGCTTTGTATAATGTGGATGCTGGACACAGAGCTGTCATCTTTGACCGATTCCGTGGCGTACAGGA
C
ATTGTGGTCGGGGAAGGGACTCATTTCCTCATCCCTTGGGTACAGAAACCAATTATCTTTGACTGCCGC
TCT
CGACCACGGAACGTACCAGTCATCACTGGTAGCAAAGACTTGCAGAACGTCAATATCACACTGCGAA
TC
CTCTTCCGGCCGGTGGCCAGCCAGCTTCCTCGTATCTACACCAGCATTGGCGAGGACTATGATGAGCG
G
GTCCTGCCTTCTATCACCACAGAGATCCTCAAGTCGGTGGTGGCTCGATTCGATGCTGGAGAATTGATT
ACC
CAGCGAGAGCTGGTCTCCAGGCAGGTGAGCGATGACCTCACAGAGCGAGCGGCAACATTTGGGCTTA
TC
CTGGATGACGTGTCCCTGACACATCTGACCTTCGGGAAGGAGTTCACAGAGGCAGTAGAAGCCAAACA
G
GTGGCTCAGCAGGAAGCGGAGAGAGCCAGATTTGTGGTGGAAAAGGCTGAGCAGCAGAAGAAGGCAGCC
ATC
ATCTCTGCTGAGGGTGACTCCAAGGCCGCTGAGCTGATCGCCAACTCGCTGGCCACGGCAGGCGACG
GC
CTGATCGAGCTGCGGAAGCTGGAGGCCGCCGAGGACATTGCGTACCAGCTCTCCCGCTCTCGGAACAT
C
ACCTACCTGCCAGCGGGCCAGTCCGTGCTTCTCCAGCTTCCCCAGTGA


Translation (272 aa):
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
S
RPRNVPVITGSK
DLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELI
T
QRELVSRQVSDDLTERAATFGLILDDVSL
THLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA
I
ISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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