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Report for CCDS22304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22304.1 Public Mus musculus 8 Aga 21 106 86 CCDS HistoryNCBI Gene:11593Re-query CCDS DB by CCDS ID:22304.1Re-query CCDS DB by GeneID:11593See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000033920 ENSMUSP00000033920 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033920Link to Ensembl Protein Viewer:ENSMUSP00000033920Re-query CCDS DB by Nucleotide ID:ENSMUST00000033920Re-query CCDS DB by Protein ID:ENSMUSP00000033920
Original member Current member EBI,WTSI OTTMUST00000148256 OTTMUSP00000077089 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000148256Link to Vega Protein Viewer:OTTMUSP00000077089Re-query CCDS DB by Nucleotide ID:OTTMUST00000148256Re-query CCDS DB by Protein ID:OTTMUSP00000077089
Original member Current member NCBI NM_001005847.2 NP_001005847.1 Accepted alive Link to Nucleotide Sequence:NM_001005847.2Link to Protein Sequence:NP_001005847.1Re-query CCDS DB by Nucleotide ID:NM_001005847Re-query CCDS DB by Protein ID:NP_001005847Link to BLAST:NP_001005847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005847.1 346 Q64191 346 100% 0 0

Chromosomal Locations for CCDS 22304.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 53511805 53511931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53513542 53513695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53514237 53514349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53515944 53516056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53517754 53517868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53518916 53518991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53520237 53520344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53521050 53521183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 53523176 53523276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGAGCGGAAGTCGAATCTGTCTCTGCTTCTCCTACTGCTGGTCCTGGGCATGCCCCTGGTGCGGGGCT
CC
AGCCCTCTGCCCCTGGTCGTCAACACTTGGCCTTTTAAGAATGCCACTGAAGCAGCGTGGTGGACATT
G
CTATCTGGAGGTTCTGCCCTGGATGCAGTGGAGAACGGCTGTGCTGTGTGTGAGAAGGAGCAGTGTGAT
GGG
ACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATAATGGATG
G
C
ACTGCCATGGATGTGGGAGCAGTGGGAGGCCTTAGAAGAATTAAAAACGCGATTGGCGTGGCGCGGAG
A
GTCCTGGAGCATACCACACACACGCTTTTAGTGGGGGACTCAGCCACCAAGTTTGCTGAAAGTATGGGG
TTT
ACTAATGAGGACTTGTCTACCAAAACCTCAAGAGATCTTCATTCAGATTGGCTTTCTCGAAATTGCC
AG
CCAAATTATTGGAGAAATGTTATTCCAGATCCCTCAAAATACTGTGGACCCTACAAACCATCTGGTTT
C
TTAAAGCAGAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGGCATGGTT
GTA
ATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAATGGTATAAAATTCAAAATACCTGGTC
GT
GTAGGGGATTCACCAATCCCTGGAGCCGGAGCCTATGCTGATGACACGGCTGGAGCAGCTGCAGCCAC
T
GGCGATGGTGACACACTCCTGCGCTTTCTGCCGAGCTACCAAGCTGTAGAATATATGAGAGGAGGAGAT
GAC
CCAGCCATAGCTTGCCAAAAAGTGATTTTAAGAATTCAGAAATACTATCCAAACTTCTTTGGAGCGG
TC
ATATGTGCCAGTGTGAACGGAAGTTATGGTGCTGCTTGCAACAAACTTCCAACATTTACACAATTTAG
T
TTCATGGTTTCTAATTCTTTACACAATGAGCCAACCGAAAAAAAAGTAGACTGCATCTAA


Translation (346 aa):
MERKSNLSLLLLLLVLGMPLVRGSSPLPLVVNTWPFKNATEAAWWTLLSGGSALDAVENGCAVCEKEQCD
G
TVGFGGSPDEGGETTLDAMIMD
GTAMDVGAVGGLRRIKNAIGVARRVLEHTTHTLLVGDSATKFAESMG
F
TNEDLSTKTSRDLHSDWLSRNCQPNYWR
NVIPDPSKYCGPYKPSGFLKQSISPHKEEVDIHSHDTIGMV
V
IHKTGHTAAGTSTNGIKFKIP
GRVGDSPIPGAGAYADDTAGAAAATGDGDTLLRFLPSYQAVEYMRGGD
D
PAIACQKVILRIQKYYPNFFGAVICASVNGSY
GAACNKLPTFTQFSFMVSNSLHNEPTEKKVDCI



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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