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Report for CCDS25507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25507.1 Public Mus musculus 11 Gfap 23 108 98 CCDS HistoryNCBI Gene:14580Re-query CCDS DB by CCDS ID:25507.1Re-query CCDS DB by GeneID:14580See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067444.9 ENSMUSP00000064691.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067444.9Link to Ensembl Protein Viewer:ENSMUSP00000064691.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067444Re-query CCDS DB by Protein ID:ENSMUSP00000064691
Original member Current member NCBI NM_010277.3 NP_034407.2 Accepted alive Link to Nucleotide Sequence:NM_010277.3Link to Protein Sequence:NP_034407.2Re-query CCDS DB by Nucleotide ID:NM_010277Re-query CCDS DB by Protein ID:NP_034407Link to BLAST:NP_034407.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034407.2 430 P03995-1 430 100% 0 0

Chromosomal Locations for CCDS 25507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102888677 102888721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102889435 102889520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102891911 102891954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102893035 102893255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102893461 102893586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102894378 102894539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102895473 102895568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102895750 102895810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102896666 102897117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGAGCGGAGACGCATCACCTCTGCGCGCCGCTCCTATGCCTCCGAGACGGTGGTCAGGGGCCTCGGTC
CTAGTCGACAACTGGGTACCATGCCACGCTTCTCCTTGTCTCGAATGACTCCTCCACTCCCTGCCAGGGT
GGACTTCTCCCTGGCCGGGGCGCTCAATGCTGGCTTCAAGGAGACACGGGCGAGCGAGCGTGCAGAGATG
ATGGAGCTCAATGACCGCTTTGCTAGCTACATCGAGAAGGTCCGCTTCCTGGAACAGCAAAACAAGGCGC
TGGCAGCTGAACTGAACCAGCTTCGAGCCAAGGAGCCCACCAAACTGGCTGATGTCTACCAGGCGGAGCT
TCGGGAGCTGCGGCTGCGGCTGGACCAGCTTACGGCCAACAGTGCCCGGCTGGAGGTGGAGAGGGACAAC
TTTGCACAGGACCTCGGCACCCTGAGGCAGAAGCTCCAAGATGAAACCAACCTGAGGCTGGAGGCAGAGA
ACAACCTGGCTGCGTATAGACAGGAGGCAGATGAAGCCACCCTGGCTCGTGTGGATTTGGAGAGAAAGGT
TGAATCGCTGGAGGAGGAGATCCAGTTCTTAAGGAAGATCTATGAGGAGGAAGTTCGAGAACTCCGGGAG
CAGCTGGCCCAACAGCAGGTCCACGTGGAGATGGATGTGGCCAAGCCAGACCTCACAGCGGCCCTGAGAG
AGATTCGCACTCAATACGAGGCAGTGGCCACCAGTAACATGCAAGAGACAGAGGAGTGGTATCGGTCTAA
GTTTGCAGACCTCACAGACGCTGCGTCCCGCAACGCAGAGCTGCTCCGCCAAGCCAAGCACGAAGCTAAC
GACTATCGCCGCCAACTGCAGGCCTTGACCTGCGATCTGGAGTCCCTGCGCGGCACGAACGAGTCCCTAG
AGCGGCAAATGCGCGAACAGGAAGAGCGCCATGCGCGGGAGTCGGCCAGTTACCAGGAGGCACTTGCTCG
GCTGGAGGAGGAGGGCCAAAGCCTCAAGGAGGAGATGGCCCGCCACCTGCAGGAGTACCAGGATCTACTC
AACGTTAAGCTAGCCCTGGACATCGAGATCGCCACCTACAGGAAATTGCTGGAGGGCGAAGAAAACCGCA
TCACCATTCCTGTACAGACTTTCTCCAACCTCCAGATCCGAGAAACCAGCCTGGACACCAAATCCGTGTC
AGAAGGCCACCTCAAGAGGAACATCGTGGTAAAGACTGTGGAGATGCGGGATGGTGAGGTCATTAAGGAC
TCGAAGCAGGAGCACAAGGACGTGGTGATGTGA

Translation (430 aa):
MERRRITSARRSYASETVVRGLGPSRQLGTMPRFSLSRMTPPLPARVDFSLAGALNAGFKETRASERAEM
MELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDN
FAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELRE
QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEAN
DYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLL
NVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKD
SKQEHKDVVM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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