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Report for CCDS51529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51529.1 Reviewed, update pending Mus musculus 5 Igfbp7 23 108 98 CCDS HistoryNCBI Gene:29817Re-query CCDS DB by CCDS ID:51529.1Re-query CCDS DB by GeneID:29817See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046746.9 ENSMUSP00000045057.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046746.9Link to Ensembl Protein Viewer:ENSMUSP00000045057.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046746Re-query CCDS DB by Protein ID:ENSMUSP00000045057
Original member NCBI NM_008048.3 NP_032074.3 Updated not alive Link to Nucleotide Sequence:NM_008048.3Link to Protein Sequence:NP_032074.3Re-query CCDS DB by Nucleotide ID:NM_008048Re-query CCDS DB by Protein ID:NP_032074
Current member NCBI NM_008048.4 NP_032074.4 Pending alive Link to Nucleotide Sequence:NM_008048.4Link to Protein Sequence:NP_032074.4Re-query CCDS DB by Nucleotide ID:NM_008048Re-query CCDS DB by Protein ID:NP_032074Link to BLAST:NP_032074.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032074.4 281 Q61581 281 100% 0 0

Chromosomal Locations for CCDS 51529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77349480 77349499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77351228 77351354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77351913 77352029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77355562 77355671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77407540 77408014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGATGGAGCGGCCGCCGCGCGCCCTGCTGCTGGGTGCAGCCGGACTGCTGCTCCTGCTCCTGCCCCTCT
CCTCTTCCTCCTCTTCGGATGCCTGCGGCCCGTGCGTGCCGGCCTCCTGCCCCGCGCTGCCCCGGCTCGG
CTGCCCGCTGGGTGAGACCCGCGACGCGTGCGGGTGCTGCCCGGTGTGTGCTCGCGGCGAGGGTGAGCCG
TGCGGGGGCGGCGCGGCCGGCAGGGGGCACTGCGCGCCGGGCATGGAGTGCGTGAAGAGCCGCAAGAGGC
GGAAGGGTAAAGCCGGGGCAGCAGCCGGCGGTCCCGCGACCCTCGCCGTGTGCGTGTGCAAGAGCCGCTA
CCCGGTGTGCGGCAGCAACGGCATCACCTACCCCAGCGGCTGCCAGCTGCGCGCTGCCAGCCTGCGCGCC
GAGAGCCGCGGGGAGAAGGCCATCACCCAGGTCAGCAAGGGCACCTGCGAGCAAGGTCCTTCCATAGTGA
CGCCCCCCAAGGACATCTGGAACGTCACTGGTGCCAAGGTGTTCTTGAGCTGTGAGGTCATCGGGATCCC
AACCCCTGTCCTCATCTGGAACAAGGTAAAAAGGGATCACTCTGGAGTTCAGCGGACAGAACTCTTGCCT
GGTGACCGGGAAAATCTGGCCATTCAGACCCGGGGTGGTCCAGAAAAGCATGAAGTAACGGGCTGGGTGC
TGGTATCTCCTCTAAGTAAGGAGGACGCTGGAGAGTATGAGTGCCACGCATCCAACTCCCAAGGGCAGGC
TTCCGCGGCAGCCAAAATTACAGTGGTTGATGCCCTCCATGAAATACCACTGAAAAAAGGTGAAGGTGCT
CAGTTATAA

Translation (282 aa):
MMERPPRALLLGAAGLLLLLLPLSSSSSSDACGPCVPASCPALPRLGCPLGETRDACGCCPVCARGEGEP
CGGGAAGRGHCAPGMECVKSRKRRKGKAGAAAGGPATLAVCVCKSRYPVCGSNGITYPSGCQLRAASLRA
ESRGEKAITQVSKGTCEQGPSIVTPPKDIWNVTGAKVFLSCEVIGIPTPVLIWNKVKRDHSGVQRTELLP
GDRENLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASAAAKITVVDALHEIPLKKGEGA
QL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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