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Report for CCDS15416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15416.1 Public Mus musculus 1 Tnfsf4 23 108 98 CCDS HistoryNCBI Gene:22164Re-query CCDS DB by CCDS ID:15416.1Re-query CCDS DB by GeneID:22164See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028024.4 ENSMUSP00000028024.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028024.4Link to Ensembl Protein Viewer:ENSMUSP00000028024.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028024Re-query CCDS DB by Protein ID:ENSMUSP00000028024
Original member Current member NCBI NM_009452.2 NP_033478.1 Accepted alive Link to Nucleotide Sequence:NM_009452.2Link to Protein Sequence:NP_033478.1Re-query CCDS DB by Nucleotide ID:NM_009452Re-query CCDS DB by Protein ID:NP_033478Link to BLAST:NP_033478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033478.1 198 P43488 198 100% 0 0

Chromosomal Locations for CCDS 15416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161395582 161395743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161414968 161415010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161416947 161417338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGAAGGGGAAGGGGTTCAACCCCTGGATGAGAATCTGGAAAACGGATCAAGGCCAAGATTCAAGTGGA
AGAAGACGCTAAGGCTGGTGGTCTCTGGGATCAAGGGAGCAGGGATGCTTCTGTGCTTCATCTATGTCTG
CCTGCAACTCTCTTCCTCTCCGGCAAAGGACCCTCCAATCCAAAGACTCAGAGGAGCAGTTACCAGATGT
GAGGATGGGCAACTATTCATCAGCTCATACAAGAATGAGTATCAAACTATGGAGGTGCAGAACAATTCGG
TTGTCATCAAGTGCGATGGGCTTTATATCATCTACCTGAAGGGCTCCTTTTTCCAGGAGGTCAAGATTGA
CCTTCATTTCCGGGAGGATCATAATCCCATCTCTATTCCAATGCTGAACGATGGTCGAAGGATTGTCTTC
ACTGTGGTGGCCTCTTTGGCTTTCAAAGATAAAGTTTACCTGACTGTAAATGCTCCTGATACTCTCTGCG
AACACCTCCAGATAAATGATGGGGAGCTGATTGTTGTCCAGCTAACGCCTGGATACTGTGCTCCTGAAGG
ATCTTACCACAGCACTGTGAACCAAGTACCACTGTGA

Translation (198 aa):
MEGEGVQPLDENLENGSRPRFKWKKTLRLVVSGIKGAGMLLCFIYVCLQLSSSPAKDPPIQRLRGAVTRC
EDGQLFISSYKNEYQTMEVQNNSVVIKCDGLYIIYLKGSFFQEVKIDLHFREDHNPISIPMLNDGRRIVF
TVVASLAFKDKVYLTVNAPDTLCEHLQINDGELIVVQLTPGYCAPEGSYHSTVNQVPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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