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Report for CCDS20139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20139.1 Public Mus musculus 6 Hoxa2 21 106 86 CCDS HistoryNCBI Gene:15399Re-query CCDS DB by CCDS ID:20139.1Re-query CCDS DB by GeneID:15399See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000014848 ENSMUSP00000014848 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014848Link to Ensembl Protein Viewer:ENSMUSP00000014848Re-query CCDS DB by Nucleotide ID:ENSMUST00000014848Re-query CCDS DB by Protein ID:ENSMUSP00000014848
Original member Current member EBI,WTSI OTTMUST00000045381 OTTMUSP00000020418 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000045381Link to Vega Protein Viewer:OTTMUSP00000020418Re-query CCDS DB by Nucleotide ID:OTTMUST00000045381Re-query CCDS DB by Protein ID:OTTMUSP00000020418
Original member Current member NCBI NM_010451.2 NP_034581.1 Accepted alive Link to Nucleotide Sequence:NM_010451.2Link to Protein Sequence:NP_034581.1Re-query CCDS DB by Nucleotide ID:NM_010451Re-query CCDS DB by Protein ID:NP_034581Link to BLink:NP_034581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034581.1 372 P31245 372 100% 0 0

Chromosomal Locations for CCDS 20139.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 6Link to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52162886 52163625 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 52164266 52164644 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAATTACGAATTTGAGCGAGAGATTGGTTTTATCAATAGCCAGCCGTCGCTCGCTGAGTGCCTGACAT
CT
TTTCCCCCTGTCGCTGATACATTTCAAAGTTCATCAATCAAGACCTCGACGCTTTCACACTCGACACT
G
ATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTGAACCCGGGCAGTCACCCTCGCCACGGCGCTGGC
GTT
GGCGGCCGCCCCAAGTCGAGCCCCGCGGGCAGTCGCGGCAGCCCGGTGCCTGCCGGCGCCCTGCAGC
CG
CCTGAGTATCCCTGGATGAAGGAGAAGAAGGCGGCCAAGAAAACCGCGCTGCCGCCCGCCGCCGCCTC
C
ACGGGCCCTGCCTGCCTCGGCCACAAAGAATCCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCAGG
CGT
CTGAGAACCGCGTACACCAACACTCAGCTTTTGGAGCTGGAAAAGGAATTTCATTTCAACAAGTACC
TT
TGCAGACCCCGCAGGGTGGAAATCGCCGCGCTGCTGGATTTGACCGAGAGACAAGTGAAAGTGTGGTT
T
CAGAACCGGAGAATGAAGCATAAGAGGCAAACCCAGTGCAAGGAGAACCAAAACAGCGAAGGGAAATTT
AAA
AACCTGGAGGACTCGGACAAAGTGGAGGAAGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCA
GT
GTCTCCGGGGCCCTTCTGGAGAGGGAAGGGTACACTTTTCAGCAAAATGCGCTCTCTCAACAGCAGGC
T
CCCAATGGACACAATGGCGACTCCCAAACTTTCCCAGTTTCGCCTTTAACCAGCAATGAGAAAAATTTG
AAA
CATTTTCAGCACCAGTCACCCACTGTTCCTAACTGCTTGTCAACAATGGGCCAGAACTGTGGAGCTG
GC
CTAAACAATGACAGTCCCGAGGCCATCGAGGTCCCCTCTTTGCAGGACTTCAATGTTTTCTCCACAGA
T
TCCTGCCTGCAGCTTTCAGATGCACTGTCGCCCAGCTTGCCTGGCTCCCTGGACAGTCCTGTAGATATC
TCA
GCTGACAGCTTTGACTTTTTTACAGACACACTCACCACAATCGACCTACAGCATCTGAATTACTAA


Translation (372 aa):
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAG
V
GGRPKSSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALPPAAASTGPACLGHK
ESLEIADGSGGGSR
R
LRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKF
K
NLEDSDKVEEDEEEKSLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQTFPVSPLTSNEKNL
K
HFQHQSPTVPNCLSTMGQNCGAGLNNDSPEAIEVPSLQDFNVFSTDSCLQLSDALSPSLPGSLDSPVDI
S
ADSFDFFTDTLTTIDLQHLNY




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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