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Report for CCDS15485.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15485.2 Public Mus musculus 1 Adamts4 23 108 98 CCDS HistoryNCBI Gene:240913Re-query CCDS DB by CCDS ID:15485.2Re-query CCDS DB by GeneID:240913See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15485.1
This coding region was updated to represent the use of a downstream start codon based on experimental evidence and conservation.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15485.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111315.8 ENSMUSP00000106947.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111315.8Link to Ensembl Protein Viewer:ENSMUSP00000106947.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111315Re-query CCDS DB by Protein ID:ENSMUSP00000106947
Original member Current member NCBI NM_172845.3 NP_766433.2 Accepted alive Link to Nucleotide Sequence:NM_172845.3Link to Protein Sequence:NP_766433.2Re-query CCDS DB by Nucleotide ID:NM_172845Re-query CCDS DB by Protein ID:NP_766433Link to BLAST:NP_766433.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766433.2 833 Q8BNJ2 833 100% 0 0

Chromosomal Locations for CCDS 15485.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171250849 171251469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171252537 171252860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171253087 171253219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171253893 171254063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171256148 171256434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171256528 171256714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171256955 171257130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171257719 171257894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171258752 171259178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACCCTGCT
TGCCGCTTCACACTGTGCAGTGGCGGAGGCTGCTGCTGCTGGCCTTCCTCCTGTCCTTAGCGTGGCCCGC
CAGCCCCCTCCCCCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCTACCTGGA
TCAGGCGTTCCTGCCAGGCTGCTGTACCGATTGCCAGCCTTTGGGGAGATGTTGCTACTAGAACTAGAAC
AGGACCCTGGGGTGCAGGTAGAGGGTTTGACTGTACAGTACCTGGGCCAGGCACCTGAGATGCTGGGTGG
GGCAGAGCCAGGTACCTACCTGACTGGCACCATCAATGGAGATCCGGAGTCGGTGGCATCTCTGCACTGG
GACGGGGGAGCCCTATTAGGGGTACTGCAGTACCGTGGGGCCGAACTCCACCTCCAGCCTCTGGAAGGAG
GCGCCCTTAACTCTGCTGGGGGACCGGGGGCTCACATCCTACGCCGGAAGAGTCCTGCCAGCAGCCAAGG
TCCCATGTGCACCGTCAAGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGCGCTTCGCT
TCTCTGAGTAGATTCGTGGAGACACTGGTGGTAGCAGATGACAAGATGGCAGCATTCCATGGTACAGGGT
TAAAGCGCTACCTGCTGACGGTTATGGCAGCTGCCGCTAAAGCCTTTAAACACCCAAGCATCCGAAACCC
TGTCAACTTGGTGGTGACGCGCCTGGTGATCCTGGGGTCCGGCCAGGAAGGGCCCCAAGTGGGGCCAAGT
GCCGCCCAGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACACCCCTAACGACTCAGATCCTG
ACCACTTTGACACAGCCATTCTGTTCACCCGGCAGGACCTGTGTGGGGTCTCCACTTGTGACACCCTGGG
TATGGCTGATGTGGGCACAGTGTGTGATCCAGCTAGGAGCTGTGCTATTGTGGAAGATGATGGGCTCCAG
TCAGCCTTCACTGCTGCTCATGAACTGGGCCATGTCTTCAACATGCTCCATGATAACTCCAAGCCATGCA
CTAACTTGAATGGGCAGGGGGGTTCCTCTCGCCATGTCATGGCTCCTGTCATGGCCCATGTGGACCCTGA
AGAGCCCTGGTCGCCCTGCAGTGCCCGATTCATCACTGACTTCCTGGACAATGGTTATGGGCACTGCCTC
TTAGACAAACCGGAGGCTCCCCTCCATCTACCAGCGACTTTTCCTGGCAAGGACTATGACGCTGACCGCC
AATGCCAACTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCCCTCTG
GTGCTCTGGCCACCTCAATGGCCATGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGATGGCACTCCC
TGCGGGTCTTCACAGGCCTGCATGGGTGGCCGCTGTCTGCACGTGGACCAGCTCAAGGACTTCAATGTTC
CTCAGGCTGGAGGCTGGGGCCCCTGGGGACCATGGGGTGACTGCTCCAGGACTTGTGGGGGTGGTGTCCA
GTTCTCCTCCCGGGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCGCCGGACT
CGCTTCCGCTCCTGCAACACGGAGAACTGCCCACACGGCTCAGCATTGACCTTCCGTGAAGAGCAGTGTG
CTGCCTACAACCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGGGTTCCGCGCTACAC
AGGTGTGGCCCCTCGAGACCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGGCTACTACTACGTATTG
GAGCCCCGGGTGGCAGATGGGACTCCCTGCTCCCCAGACACCTCCTCTGTCTGTGTCCAGGGCCGCTGTA
TCCATGCTGGCTGTGACCGGATCATTGGCTCCAAAAAGAAATTTGACAAGTGCATGGTGTGCGGCGGGGA
TGGCTCTCGCTGCAGCAAGCAGTCGGGCTCCTTCAAAAAATTCAGGTATGGATACAGCGATGTGGTCACG
ATCCCTGCGGGGGCCACCCATATCCTTGTACGGCAGCAGGGGGGGTCTGGTCTCAAGAGCATCTACCTGG
CCCTGAAGCTTTCTGACGGTTCTTACGCCCTCAATGGTGAATACACGCTGATGCCCTCCCCAACAGATGT
GGTTCTTCCTGGGGCAGTCAGCTTGCGCTACAGCGGAGCCACAGCAGCCTCAGAGACACTGTCTGGACAT
GGGCCGCTGGCCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGT
ACAGTTTCTTTGTCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGCAG
GGCAGAGATACTGAAGATCCTTCGGAAGCGTCCCTGGGCAGGCCGGAAATAA

Translation (833 aa):
MSQMGLHPRRGLTGHWLQRFQPCLPLHTVQWRRLLLLAFLLSLAWPASPLPREEEIVFPEKLNGSSILPG
SGVPARLLYRLPAFGEMLLLELEQDPGVQVEGLTVQYLGQAPEMLGGAEPGTYLTGTINGDPESVASLHW
DGGALLGVLQYRGAELHLQPLEGGALNSAGGPGAHILRRKSPASSQGPMCTVKAPSGSPSPISRRTKRFA
SLSRFVETLVVADDKMAAFHGTGLKRYLLTVMAAAAKAFKHPSIRNPVNLVVTRLVILGSGQEGPQVGPS
AAQTLRSFCTWQRGLNTPNDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQ
SAFTAAHELGHVFNMLHDNSKPCTNLNGQGGSSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCL
LDKPEAPLHLPATFPGKDYDADRQCQLTFGPDSSHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTP
CGSSQACMGGRCLHVDQLKDFNVPQAGGWGPWGPWGDCSRTCGGGVQFSSRDCTRPVPRNGGKYCEGRRT
RFRSCNTENCPHGSALTFREEQCAAYNHRTDLFKSFPGPMDWVPRYTGVAPRDQCKLTCQARALGYYYVL
EPRVADGTPCSPDTSSVCVQGRCIHAGCDRIIGSKKKFDKCMVCGGDGSRCSKQSGSFKKFRYGYSDVVT
IPAGATHILVRQQGGSGLKSIYLALKLSDGSYALNGEYTLMPSPTDVVLPGAVSLRYSGATAASETLSGH
GPLAQPLTLQVLVAGNPQNARLRYSFFVPRPVPSTPRPPPQDWLQRRAEILKILRKRPWAGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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