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Report for CCDS28326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28326.1 Public Mus musculus 16 Ifnar1 23 108 98 CCDS HistoryNCBI Gene:15975Re-query CCDS DB by CCDS ID:28326.1Re-query CCDS DB by GeneID:15975See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023689.10 ENSMUSP00000023689.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023689.10Link to Ensembl Protein Viewer:ENSMUSP00000023689.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023689Re-query CCDS DB by Protein ID:ENSMUSP00000023689
Original member Current member EBI ENSMUST00000117748.7 ENSMUSP00000112670.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117748.7Link to Ensembl Protein Viewer:ENSMUSP00000112670.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117748Re-query CCDS DB by Protein ID:ENSMUSP00000112670
Original member Current member NCBI NM_010508.2 NP_034638.2 Accepted alive Link to Nucleotide Sequence:NM_010508.2Link to Protein Sequence:NP_034638.2Re-query CCDS DB by Nucleotide ID:NM_010508Re-query CCDS DB by Protein ID:NP_034638Link to BLAST:NP_034638.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034638.2 590 P33896 590 100% 0 0

Chromosomal Locations for CCDS 28326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91485344 91485416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91489696 91489819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91492631 91492809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91495149 91495303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91495391 91495532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91496144 91496261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91499404 91499603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91499856 91499989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91501622 91501769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91503385 91503527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91505055 91505411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGCTCGCTGTCGTGGGCGCGGCGGCCCTGGTGCTGGTGGCCGGGGCGCCTTGGGTGCTACCCTCAGCTG
CAGGTGGAGAAAATCTGAAACCTCCTGAGAATATAGACGTCTACATTATAGATGACAACTACACCCTAAA
GTGGAGCAGCCACGGAGAGTCAATGGGCAGTGTGACCTTTTCAGCAGAATATCGAACAAAAGACGAGGCG
AAGTGGTTAAAAGTGCCTGAATGTCAACATACTACAACGACCAAGTGTGAATTCTCTTTACTGGACACAA
ATGTGTATATCAAAACACAGTTTCGTGTCAGAGCAGAGGAAGGGAACAGCACATCTTCGTGGAATGAGGT
TGATCCGTTTATTCCATTCTACACAGCTCACATGAGCCCCCCAGAAGTACGTTTAGAAGCTGAAGATAAA
GCCATACTAGTCCACATCTCTCCTCCCGGACAAGACGGGAACATGTGGGCACTGGAGAAACCTTCCTTCA
GTTACACCATACGAATCTGGCAGAAGTCTTCCAGTGACAAAAAAACTATTAACTCTACGTATTATGTAGA
AAAGATACCAGAACTCTTGCCAGAGACTACTTACTGTTTAGAAGTTAAAGCAATACATCCGTCACTTAAG
AAACACAGCAATTACAGCACTGTGCAGTGTATAAGCACCACAGTGGCAAATAAAATGCCTGTGCCAGGAA
ATCTCCAAGTGGATGCCCAAGGCAAGAGCTATGTCCTGAAATGGGACTACATTGCGTCTGCAGACGTGCT
CTTCAGGGCACAGTGGCTTCCTGGCTATTCAAAAAGCAGTTCTGGAAGCCGTTCAGATAAATGGAAACCA
ATACCAACCTGTGCAAATGTCCAGACTACGCACTGTGTCTTTTCTCAAGATACTGTCTACACAGGAACGT
TCTTTCTCCATGTACAAGCCTCAGAGGGAAATCACACATCCTTTTGGTCTGAAGAGAAGTTTATTGATTC
TCAAAAACACATTCTCCCTCCTCCTCCGGTCATTACTGTCACCGCCATGAGTGACACCTTGCTTGTTTAT
GTCAACTGTCAGGACAGCACATGTGATGGACTCAATTACGAAATCATCTTTTGGGAAAACACTTCCAATA
CTAAGATAAGCATGGAGAAGGATGGCCCAGAGTTCACCCTCAAGAACCTGCAGCCGCTGACTGTGTACTG
TGTCCAGGCCAGAGTGCTCTTCAGGGCCCTGCTGAATAAGACCAGCAACTTCAGTGAAAAGCTGTGTGAG
AAAACACGTCCAGGAAGTTTTTCCACGATCTGGATTATAACTGGATTAGGTGTTGTGTTCTTCTCTGTCA
TGGTCCTTTATGCTTTGAGGAGCGTCTGGAAATACCTGTGTCATGTGTGCTTCCCACCACTCAAGCCTCC
CCGCAGTATTGATGAGTTTTTCTCTGAGCCGCCTTCAAAAAACCTTGTACTTCTGACGGCTGAGGAGCAC
ACGGAAAGATGCTTCATCATTGAGAATACAGACACGGTCGCTGTAGAAGTAAAGCACGCGCCTGAGGAGG
ACCTCAGGAAGTACAGCTCACAGACCAGCCAGGACTCGGGCAACTATTCCAACGAAGAGGAGGAGAGTGT
GGGCACCGAGAGCGGCCAAGCTGTGCTCTCCAAAGCTCCCTGCGGGGGGCCATGCAGCGTGCCTAGCCCT
CCTGGGACCTTGGAAGACGGGACCTGCTTCCTGGGAAATGAAAAATATCTTCAGAGCCCAGCCCTGAGGA
CAGAGCCAGCTCTTCTCTGCTGA

Translation (590 aa):
MLAVVGAAALVLVAGAPWVLPSAAGGENLKPPENIDVYIIDDNYTLKWSSHGESMGSVTFSAEYRTKDEA
KWLKVPECQHTTTTKCEFSLLDTNVYIKTQFRVRAEEGNSTSSWNEVDPFIPFYTAHMSPPEVRLEAEDK
AILVHISPPGQDGNMWALEKPSFSYTIRIWQKSSSDKKTINSTYYVEKIPELLPETTYCLEVKAIHPSLK
KHSNYSTVQCISTTVANKMPVPGNLQVDAQGKSYVLKWDYIASADVLFRAQWLPGYSKSSSGSRSDKWKP
IPTCANVQTTHCVFSQDTVYTGTFFLHVQASEGNHTSFWSEEKFIDSQKHILPPPPVITVTAMSDTLLVY
VNCQDSTCDGLNYEIIFWENTSNTKISMEKDGPEFTLKNLQPLTVYCVQARVLFRALLNKTSNFSEKLCE
KTRPGSFSTIWIITGLGVVFFSVMVLYALRSVWKYLCHVCFPPLKPPRSIDEFFSEPPSKNLVLLTAEEH
TERCFIIENTDTVAVEVKHAPEEDLRKYSSQTSQDSGNYSNEEEESVGTESGQAVLSKAPCGGPCSVPSP
PGTLEDGTCFLGNEKYLQSPALRTEPALLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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