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Report for CCDS35438.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35438.1 Reviewed, update pending Homo sapiens X HAUS7 22 109 92 CCDS HistoryNCBI Gene:55559Re-query CCDS DB by CCDS ID:35438.1Re-query CCDS DB by GeneID:55559See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 35438.1
The translation initiation codon selected for this CCDS representation has a strong Kozak signal, but it appears to be human-specific. A much better-conserved alternate start codon, which also has a strong Kozak signal, exists further downstream. Use of the downstream start codon would result in a protein that is 10 aa shorter at the N-terminus. No experimental evidence exists to indicate which start codon is used in vivo.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Sequence IDs included in CCDS 35438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000370211.8 ENSP00000359230.5 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000370211.8Link to Ensembl Protein Viewer:ENSP00000359230.5Re-query CCDS DB by Nucleotide ID:ENST00000370211Re-query CCDS DB by Protein ID:ENSP00000359230
Current member NCBI NM_001385482.1 NP_001372411.1 MANE Select Pending alive Link to Nucleotide Sequence:NM_001385482.1Link to Protein Sequence:NP_001372411.1Re-query CCDS DB by Nucleotide ID:NM_001385482Re-query CCDS DB by Protein ID:NP_001372411Link to BLAST:NP_001372411.1
Original member NCBI NM_017518.7 NP_059988.3 Removed not alive Link to Nucleotide Sequence:NM_017518.7Link to Protein Sequence:NP_059988.3Re-query CCDS DB by Nucleotide ID:NM_017518Re-query CCDS DB by Protein ID:NP_059988Link to BLAST:NP_059988.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372411.1 358 Q99871-1 358 100% 0 0

Chromosomal Locations for CCDS 35438.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153447878 153447909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153454394 153454508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153455542 153455766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153456265 153456364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153456493 153456651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153457137 153457228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153462610 153462671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153464988 153465055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153469146 153469261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153470450 153470587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGGCGGGGCGCGGCTCGGAGCGCGAAACATGGCGGGGCAGGACGCTGGCTGCGGCCGTGGCGGCGACG
ACTACTCAGAGGACGAGGGCGACAGCAGCGTGTCCAGGGCGGCTGTGGAGGTGTTCGGGAAGCTGAAGGA
CCTAAACTGCCCCTTCCTCGAGGGTCTGTATATCACAGAGCCAAAGACAATTCAGGAACTGCTGTGCAGC
CCCTCAGAGTACCGCTTGGAGATCCTAGAGTGGATGTGTACCCGGGTCTGGCCCTCACTGCAGGACAGGT
TCAGCTCACTGAAAGGGGTCCCAACAGAGGTGAAGATCCAAGAAATGACGAAGCTGGGCCACGAGCTGAT
GCTGTGTGCGCCAGATGACCAGGAGCTCCTCAAGGGCTGTGCCTGCGCCCAGAAGCAGCTACACTTCATG
GACCAGTTGCTCGATACCATCCGGAGCCTGACCATTGGGTGCTCCAGTTGCTCGAGCCTGATGGAGCACT
TCGAGGACACCAGGGAGAAGAACGAGGCCTTGCTGGGGGAGCTCTTCTCTAGCCCCCACCTGCAGATGCT
CCTGAATCCAGAGTGCGACCCGTGGCCCCTGGACATGCAGCCCCTCCTCAACAAGCAGAGTGATGACTGG
CAGTGGGCCAGTGCCTCTGCCAAGTCCGAGGAGGAGGAGAAGCTGGCGGAGCTTGCCAGGCAGCTGCAGG
AGAGTGCTGCCAAGTTGCACGCGCTTAGAACGGAGTACTTTGCACAGCATGAGCAAGGGGCTGCTGCGGG
CGCAGCCGACATCAGCACCCTAGACCAGAAGCTGCGTCTGGTCACTTCCGACTTCCACCAGCTAATCTTG
GCTTTTCTCCAAGTCTACGACGACGAGCTGGGCGAGTGCTGCCAGCGCCCAGGCCCTGACCTCCACCCGT
GCGGCCCCATCATCCAGGCCACGCACCAGAATCTGACTTCCTACAGCCAACTGCTGCAAGTGGTCATGGC
AGTTGCTGACACCTCTGCGAAGGCCGTGGAGACCGTGAAGAAGCAGCAAGGCGAGCAGATCTGCTGGGGT
GGCAGCAGCTCCGTCATGAGTCTAGCTACCAAGATGAATGAACTAATGGAGAAATAG

Translation (368 aa):
MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITEPKTIQELLCS
PSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCAPDDQELLKGCACAQKQLHFM
DQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDW
QWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLIL
AFLQVYDDELGECCQRPGPDLHPCGPIIQATHQNLTSYSQLLQVVMAVADTSAKAVETVKKQQGEQICWG
GSSSVMSLATKMNELMEK


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