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Report for CCDS18308.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18308.1 Public Mus musculus 4 Plin2 21 106 86 CCDS HistoryNCBI Gene:11520Re-query CCDS DB by CCDS ID:18308.1Re-query CCDS DB by GeneID:11520See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 18308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member EBI ENSMUST00000000466 ENSMUSP00000000466 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000000466Link to Ensembl Protein Viewer:ENSMUSP00000000466Re-query CCDS DB by Nucleotide ID:ENSMUST00000000466Re-query CCDS DB by Protein ID:ENSMUSP00000000466
Original member Current member EBI OTTMUST00000017238 OTTMUSP00000007962 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000017238Link to Vega Protein Viewer:OTTMUSP00000007962Re-query CCDS DB by Nucleotide ID:OTTMUST00000017238Re-query CCDS DB by Protein ID:OTTMUSP00000007962
Original member NCBI NM_007408.3 NP_031434.3 Accepted not alive Link to Nucleotide Sequence:NM_007408.3Link to Protein Sequence:NP_031434.3Re-query CCDS DB by Nucleotide ID:NM_007408Re-query CCDS DB by Protein ID:NP_031434Link to BLAST:NP_031434.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031434.3 425 P43883 425 100% 0 0

Chromosomal Locations for CCDS 18308.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 86657033 86657404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4
4 86658581 86658715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4
4 86660088 86660269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4
4 86661934 86662213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4
4 86664429 86664511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4
4 86668367 86668562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4
4 86668650 86668679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCAGCAGCAGTAGTGGATCCGCAACAGAGCGTGGTGATGAGAGTGGCCAACCTGCCCTTGGTGAGCT
CTACCTACGACCTTGTGTCCTCCGCTTATGTCAGTACAAAGGATCAGTACCCGTATTTGAGATCCGTGTG
TGAGATGGCCGAGAAGGGCGTGAAGACCGTGACCTCTGCGGCCATGACAAGTGCCCTGCCCATCATCCAG
AAGCTGGAGCCACAAATTGCGGTTGCCAATACCTATGCCTGCAAGGGGCTAGACAGGATGGAGGAAAGAC
TGCCTATTCTGAACCAGCCAACGTCCGAGATTGTTGCCAGTGCCAGAGGTGCCGTAACTGGGGCGAAGGA
TGTGGTGACGACTACCATGGCTGGAGCCAAGGATTCTGTAGCCAGCACAGTCTCAGGGGTGGTGGATAAG
ACCAAAGGAGCAGTGACTGGCAGCGTGGAAAGGACCAAGTCTGTGGTCAATGGCAGCATCAATACAGTTT
TGGGGATGGTGCAGTTCATGAACAGTGGAGTAGATAATGCCATCACCAAGTCGGAGCTGCTGGTAGACCA
GTACTTCCCTCTCACTCAGGAGGAGCTGGAGATGGAAGCAAAAAAGGTGGAAGGATTTGATATGGTTCAG
AAGCCGAGCAACTATGAACGGCTGGAGTCCCTGTCTACCAAGCTCTGCTCTCGGGCTTATCACCAGGCTC
TCAGCAGGGTTAAAGAGGCCAAACAAAAGAGCCAGGAGACCATTTCTCAGCTCCACTCCACTGTCCACCT
GATTGAATTCGCCAGGAAGAATATGCACAGTGCCAACCAGAAAATTCAGGGTGCTCAGGATAAGCTCTAT
GTCTCGTGGGTGGAGTGGAAGAGAAGCATCGGCTACGACGACACCGATGAGTCCCACTGTGTTGAGCACA
TCGAGTCACGTACTCTGGCTATCGCCCGCAACCTGACCCAGCAGCTCCAGACTACATGCCAGACTGTCCT
GGTCAACGCCCAAGGGTTACCACAGAACATTCAAGATCAGGCCAAACACTTGGGGGTGATGGCAGGCGAC
ATCTACTCCGTATTCCGCAATGCTGCCTCCTTTAAGGAAGTGTCCGATGGCGTCCTCACATCTAGCAAGG
GGCAGCTGCAGAAAATGAAGGAATCCTTAGATGAAGTTATGGATTACTTTGTTAACAACACGCCTCTCAA
CTGGCTGGTAGGTCCCTTTTATCCTCAGTCTACCGAGGTGAACAAGGCCAGCCTGAAGGTCCAGCAGTCT
GAGGTCAAAGCTCAGTAA

Translation (425 aa):
MAAAVVDPQQSVVMRVANLPLVSSTYDLVSSAYVSTKDQYPYLRSVCEMAEKGVKTVTSAAMTSALPIIQ
KLEPQIAVANTYACKGLDRMEERLPILNQPTSEIVASARGAVTGAKDVVTTTMAGAKDSVASTVSGVVDK
TKGAVTGSVERTKSVVNGSINTVLGMVQFMNSGVDNAITKSELLVDQYFPLTQEELEMEAKKVEGFDMVQ
KPSNYERLESLSTKLCSRAYHQALSRVKEAKQKSQETISQLHSTVHLIEFARKNMHSANQKIQGAQDKLY
VSWVEWKRSIGYDDTDESHCVEHIESRTLAIARNLTQQLQTTCQTVLVNAQGLPQNIQDQAKHLGVMAGD
IYSVFRNAASFKEVSDGVLTSSKGQLQKMKESLDEVMDYFVNNTPLNWLVGPFYPQSTEVNKASLKVQQS
EVKAQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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