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Report for CCDS19661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19661.1 Public Mus musculus 5 Bcl7a 23 108 98 CCDS HistoryNCBI Gene:77045Re-query CCDS DB by CCDS ID:19661.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031391.8 ENSMUSP00000031391.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031391.8Link to Ensembl Protein Viewer:ENSMUSP00000031391.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031391Re-query CCDS DB by Protein ID:ENSMUSP00000031391
Original member Current member NCBI NM_029850.3 NP_084126.1 Accepted alive Link to Nucleotide Sequence:NM_029850.3Link to Protein Sequence:NP_084126.1Re-query CCDS DB by Nucleotide ID:NM_029850Re-query CCDS DB by Protein ID:NP_084126Link to BLAST:NP_084126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084126.1 210 Q9CXE2-1 210 100% 0 0

Chromosomal Locations for CCDS 19661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123344630 123344721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123351867 123351948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123355941 123356037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123361191 123361358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123369333 123369454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123371018 123371089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGTCGGGCAGGTCGGTTCGAGCCGAGACCAGGAGCCGGGCCAAAGATGATATCAAGAGGGTCATGGCGG
CTATCGAGAAAGTGCGCAAATGGGAGAAGAAATGGGTGACCGTTGGCGATACATCCCTACGAATCTACAA
GTGGGTCCCTGTGACGGAGCCAAAGGTTGATGATAAAAACAAGAACAAGAAGAAAGGCAAGGACGAGAAG
TGTGGCTCGGAGGTGACCACTCCAGAGAACAGCTCGTCTCCTGGGATGATGGACATGCACGATGATAACA
GCAACCAGAGCTCCATAGCAGACGCCTCCCCCATCAAGCAAGAGAACAGCAGCAACTCCAGCCCTGCCCC
AGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAA
GAGCACCCTGGAGCTGAAGATGCATCCGAGGAGCAAAATTCACAGTCTTCGATGGAAAACTCGGTGAACA
GCTCCGAGAAGGCAGAACGGCAGCCATCTGCAGAATCAGGGTTAGCGGCAGAAACGTCGGCAGTCTCTCA
GGATTTGGAAGGAGTGCCGCCGTCTAAAAAGATGAAGCTGGAAGCCTCTCAACAGAACTCAGAAGAGATG
TAG

Translation (210 aa):
MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVPVTEPKVDDKNKNKKKGKDEK
CGSEVTTPENSSSPGMMDMHDDNSNQSSIADASPIKQENSSNSSPAPETNPPVPSDGTEAKADEAQADGK
EHPGAEDASEEQNSQSSMENSVNSSEKAERQPSAESGLAAETSAVSQDLEGVPPSKKMKLEASQQNSEEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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