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Report for CCDS28269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28269.1 Public Mus musculus 16 Chmp2b 23 108 98 CCDS HistoryNCBI Gene:68942Re-query CCDS DB by CCDS ID:28269.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004965.7 ENSMUSP00000004965.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004965.7Link to Ensembl Protein Viewer:ENSMUSP00000004965.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004965Re-query CCDS DB by Protein ID:ENSMUSP00000004965
Original member Current member NCBI NM_026879.3 NP_081155.1 Accepted alive Link to Nucleotide Sequence:NM_026879.3Link to Protein Sequence:NP_081155.1Re-query CCDS DB by Nucleotide ID:NM_026879Re-query CCDS DB by Protein ID:NP_081155Link to BLAST:NP_081155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081155.1 213 Q8BJF9 213 100% 0 0

Chromosomal Locations for CCDS 28269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 65540140 65540250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65540420 65540526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65545277 65545379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65546849 65547043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65550963 65551054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65562475 65562508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCCTCCCTCTTCAAGAAGAAGACTGTGGACGATGTCATAAAGGAACAGAATCGAGAGCTGCGTGGCA
CCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAAACAGGAGAAACAGCTGGAGTTAGAAATTAA
GAAGATGGCCAAGATTGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAA
CAGAAGACAAGAACGTTCGCTGTAAGCTCAAAAGTCACCTCTATGTCCACACAAACGAAAGTGATGAATT
CCCAGATGAAGATGGCCGGTGCCATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGA
TCCACAGAAGACACTACAAACAATGCAGAATTTCCAGAAGGAAAACATGAAAATGGAAATGACTGAAGAA
ATGATCAATGACACCCTGGATGACATCTTTGATGGCTCTGATGATGAAGAAGAAAGCCAGGACATCGTGA
ATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAG
CTTACCGTCTGCCTCCACTTCAAAGGCTACAATTTCTGATGAAGAGATTGAACGTCAACTCAAAGCTTTA
GGGGTAGATTAG

Translation (213 aa):
MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRK
QKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEE
MINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL
GVD


Links Key
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