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Report for CCDS52593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52593.1 Public Mus musculus 8 Or2z9 23 108 98 CCDS HistoryNCBI Gene:258532Re-query CCDS DB by CCDS ID:52593.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074540.4 ENSMUSP00000074128.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074540.4Link to Ensembl Protein Viewer:ENSMUSP00000074128.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074540Re-query CCDS DB by Protein ID:ENSMUSP00000074128
Original member Current member EBI ENSMUST00000215198.1 ENSMUSP00000149452.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215198.1Link to Ensembl Protein Viewer:ENSMUSP00000149452.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215198Re-query CCDS DB by Protein ID:ENSMUSP00000149452
Original member Current member EBI ENSMUST00000213940.1 ENSMUSP00000149853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213940.1Link to Ensembl Protein Viewer:ENSMUSP00000149853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213940Re-query CCDS DB by Protein ID:ENSMUSP00000149853
Original member Current member NCBI NM_146539.2 NP_666750.2 Accepted alive Link to Nucleotide Sequence:NM_146539.2Link to Protein Sequence:NP_666750.2Re-query CCDS DB by Nucleotide ID:NM_146539Re-query CCDS DB by Protein ID:NP_666750Link to BLAST:NP_666750.2

Chromosomal Locations for CCDS 52593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72099762 72100706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGGGACTTCAAATGTGTCATCAAATTCAGATTTCATCCTCATGGGGCTCTTCAGCTACACAGGGCCCC
ATCTTGTCCTGTTCTTCCTCATGGCCACCGTGTTCATCATTGGCCTGCTAGGCAACACCACCCTGCTTTT
TCTGATTGCCACAGACTCCAGGCTCCACACACCCATGTACTTCCTGCTCAGCCAACTCTCACTTCTGGAT
GTCGGCTTCCCACTGGTTACCATCCCCAAAGTGGTGGCTGAGTTCCTGCAAGGACAGAATGTCATAAGCT
TTGGGGGATGTGCCACTCAGATGTTCTTCCTCATGCTCATGGGTGTCTCTGAGGGTGTCCTTCTGTCCCT
CATGTCTTATGACCGCTACGTGGCCGTATGCCACCCCCTGCACTACCAGGTGCTCATGAGAAACCAAGTG
TGTCTGGTGATGGTGGGTGCATCCTGGTTCTCAGGTGCCTTGGTGGCCTCCATCCTGACCTCCATCACCC
TGCAGTTCCCCTACTGTGCCTCACACACCGTGGACCACTTCTTCTGTGAGATGCCAGCTCTCCTCAAGCT
GTCATGTGCAGACACATCAGCCTATGAGTTGGCGCTCTCCATCTCTGGGGTGCTGATCTTACTGCTACCC
CTGTCTCTCATCTTCATTTCCTACGGCCACGTTCTGGGAGCTGTCCTGCTCATGCGGTCAGCTGAAGCTA
GACACAAGGCTTTCACCACGTGCTCCTCACATGTGACTGTAGTGGGTCTCTTTTTTGGGGCAGCTGTATT
CATATACATGGTCCCAGGCAGCTACCACAGCCCAAAACAGGATAATGTGGTATCCCTCTTCTACAGCCTC
ATCACCCCTACCCTCAACCCCCTCATCTACAGCTTGAGAAACAGAGAAGTTCGAATGTCCTTGGTCAAGT
TCATGGGCAGGTCTGACTTCAAGGTGAAGGGATGA

Translation (314 aa):
MGTSNVSSNSDFILMGLFSYTGPHLVLFFLMATVFIIGLLGNTTLLFLIATDSRLHTPMYFLLSQLSLLD
VGFPLVTIPKVVAEFLQGQNVISFGGCATQMFFLMLMGVSEGVLLSLMSYDRYVAVCHPLHYQVLMRNQV
CLVMVGASWFSGALVASILTSITLQFPYCASHTVDHFFCEMPALLKLSCADTSAYELALSISGVLILLLP
LSLIFISYGHVLGAVLLMRSAEARHKAFTTCSSHVTVVGLFFGAAVFIYMVPGSYHSPKQDNVVSLFYSL
ITPTLNPLIYSLRNREVRMSLVKFMGRSDFKVKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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