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Report for CCDS12623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12623.1 Public Homo sapiens 19 ZNF575 24 110 108 CCDS HistoryNCBI Gene:284346Re-query CCDS DB by CCDS ID:12623.1Re-query CCDS DB by GeneID:284346See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314228.10 ENSP00000315870.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314228.10Link to Ensembl Protein Viewer:ENSP00000315870.4Re-query CCDS DB by Nucleotide ID:ENST00000314228Re-query CCDS DB by Protein ID:ENSP00000315870
Original member Current member EBI ENST00000598080.6 ENSP00000471083.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000598080.6Link to Ensembl Protein Viewer:ENSP00000471083.2Re-query CCDS DB by Nucleotide ID:ENST00000598080Re-query CCDS DB by Protein ID:ENSP00000471083
Original member Current member EBI ENST00000601282.1 ENSP00000472578.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000601282.1Link to Ensembl Protein Viewer:ENSP00000472578.1Re-query CCDS DB by Nucleotide ID:ENST00000601282Re-query CCDS DB by Protein ID:ENSP00000472578
Original member Current member NCBI NM_001394237.1 NP_001381166.1 Accepted alive Link to Nucleotide Sequence:NM_001394237.1Link to Protein Sequence:NP_001381166.1Re-query CCDS DB by Nucleotide ID:NM_001394237Re-query CCDS DB by Protein ID:NP_001381166Link to BLAST:NP_001381166.1
Original member Current member NCBI NM_174945.3 NP_777605.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174945.3Link to Protein Sequence:NP_777605.1Re-query CCDS DB by Nucleotide ID:NM_174945Re-query CCDS DB by Protein ID:NP_777605Link to BLAST:NP_777605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381166.1 245 Q86XF7 245 100% 0 0
NP_777605.1 245 Q86XF7 245 100% 0 0

Chromosomal Locations for CCDS 12623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43534423 43534501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43535029 43535687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGCTGGAGCGAGGCGCGGAGTCCGCGGCCGGGGCTACCGATCCTAGTCCCACTGGCAAGGAACCAGTGA
CCAAAGAAGCTCCCCACCAGGGCCCACCGCAGAAGCCCAGCCAGTCAGCTCCAGGGCCCACCGCGTCCGC
GGGCTCGCCTCCCCGGCCTCGCCGGCGGCCCCCGCCCCAGCGCCCGCACCGCTGCCCCGACTGTGACAAG
GCCTTCTCGTACCCGTCCAAGCTGGCCACGCACCGCTTAGCACACGGAGGCGCCCGACCCCACCCATGCC
CAGACTGCCCCAAGGCCTTCTCCTACCCCTCCAAGCTGGCAGCCCACCGCCTCACGCACAGCGGCGCCCG
CCCGCACCCGTGCCCACACTGCCCGAAGTCCTTTGGCCACCGCTCCAAGCTGGCGGCTCACCTCTGGACC
CACGCACCCACCCGCCCCTACCCGTGCCCCGACTGCCCCAAGTCCTTCTGCTACCCTTCCAAGCTGGCGG
CCCACCGCCACACGCACCACGCCACCGACGCCCGCCCCTATCCTTGCCCGCATTGCCCCAAGGCTTTCTC
ATTTCCCTCCAAGCTGGCCGCCCATCGCCTATGTCACGACCCCCCAACCGCGCCCGGCAGCCAGGCGACT
GCCTGGCACCGATGCTCCAGCTGCGGCCAGGCCTTTGGCCAGAGACGCTTACTGCTCCTTCATCAACGCA
GCCACCACCAGGTGGAGCACAAGGGGGAGAGAGACTGA

Translation (245 aa):
MLERGAESAAGATDPSPTGKEPVTKEAPHQGPPQKPSQSAPGPTASAGSPPRPRRRPPPQRPHRCPDCDK
AFSYPSKLATHRLAHGGARPHPCPDCPKAFSYPSKLAAHRLTHSGARPHPCPHCPKSFGHRSKLAAHLWT
HAPTRPYPCPDCPKSFCYPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAAHRLCHDPPTAPGSQAT
AWHRCSSCGQAFGQRRLLLLHQRSHHQVEHKGERD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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