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Report for CCDS78241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78241.1 Public Homo sapiens 7 SPDYE5 24 110 108 CCDS HistoryNCBI Gene:442590Re-query CCDS DB by CCDS ID:78241.1Re-query CCDS DB by GeneID:442590See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 78241.1
This gene lacks best hit full-length transcript support, and therefore the exon combination of this CCDS representation is inferred from paralogous transcript alignments.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 78241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000625065.4 ENSP00000485398.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000625065.4Link to Ensembl Protein Viewer:ENSP00000485398.1Re-query CCDS DB by Nucleotide ID:ENST00000625065Re-query CCDS DB by Protein ID:ENSP00000485398
Original member Current member NCBI NM_001306141.4 NP_001293070.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001306141.4Link to Protein Sequence:NP_001293070.1Re-query CCDS DB by Nucleotide ID:NM_001306141Re-query CCDS DB by Protein ID:NP_001293070Link to BLAST:NP_001293070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293070.1 402 A6NIY4 402 100% 0 0

Chromosomal Locations for CCDS 78241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 75494048 75494207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75495156 75495374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75496674 75496904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75497938 75497996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75499231 75499316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75501362 75501755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75501878 75501937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGACAGAACGGAGACTAGGTTCCGTAAGAGGGGACAGATTACGGAAAAGATCACGACCAGCCGTCAAC
CGCAACCCCAGAATGAGCAGAGTCCCCAGCGGAGCACCTCGGGGTACCCCCTCCAGGAGGTGGTGGATGA
TGAAGTGTTGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCATGTAGGTCCCTTGGCTGGAAAAGG
AAGAGGGAGTGGTCAGATGAATCTGCGGAGGAGCCGGAGAAGGAGCTCGCCCCTGAACCTGAGGAGACCT
GGGTAGTGGAGATGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGAGTGTCACCCATCCTCCCTGA
GCACCACAAGGGCTTCAACAGTCAGCTTGCCCCTGGGGTAGATCCCAGCCCCCCGCATAGGTCCTTTTGC
TGGAAAAGGAAGATGGAGTGGTGGGACGAATCTGAGGAGTCGTTGGAGGAGGAGCCACGGAAGGTGCTCG
CCCCTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATGAAGCTGAAGCGACGGCG
AGTGTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGA
TTCCTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTCA
GCCGGGCCGGCTTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAATGA
CATGGAGGAGGACGACGAGGACTCCAAACAAAACATCTTCCACTTCCTGTATGGGAAGAACCGCTCTCGC
ATACCCTTGCTCCGTAAGCGTTGGTTCCAGTTAGGCCGTTCCATGAACCCGAGGGCCAGGAAGAAGCGCT
CTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTAGGCCGTTCCATGAACCCGAGGGCCAGGAAGAA
CCGCTCTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTAGGCCGTTCCATGAACCTGAGGGCCAGG
AAGAACCGCTCTCAGATAGTCCTGTTCCAGAAACGTCGGTTCCAGTTCTTCTGTTCCATGAGCGGCAGGG
CTTGGGTTTCCCCGGAGGAGTTGGAGGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGA
TCGCGCTCACCTTTCCTAG

Translation (402 aa):
MDRTETRFRKRGQITEKITTSRQPQPQNEQSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPCRSLGWKR
KREWSDESAEEPEKELAPEPEETWVVEMLCGLKMKLKQQRVSPILPEHHKGFNSQLAPGVDPSPPHRSFC
WKRKMEWWDESEESLEEEPRKVLAPEPEEIWVAEMLCGLKMKLKRRRVSLVLPEHHEAFNRLLEDPVIKR
FLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLANDMEEDDEDSKQNIFHFLYGKNRSR
IPLLRKRWFQLGRSMNPRARKKRSRIPLLRKRRFQLGRSMNPRARKNRSRIPLLRKRRFQLGRSMNLRAR
KNRSQIVLFQKRRFQFFCSMSGRAWVSPEELEEIQAYDPEHWVWARDRAHLS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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